Basic Information

Insect: Microdon myrmicae
Gene Symbol: su(Hw)
Assembly: GCA_963931805.1
Location: OZ007499.1:86836978-86842548[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.7e-06 0.0002 22.5 0.5 3 23 54 75 52 75 0.92

2 9 0.0029 0.34 12.3 0.0 1 23 81 103 81 103 0.97

3 9 8.4e-05 0.0096 17.2 2.5 1 21 110 130 110 131 0.95

4 9 0.00017 0.02 16.2 1.7 2 23 143 164 142 164 0.97

5 9 1.1e-06 0.00012 23.1 1.5 1 23 175 197 175 197 0.99

6 9 5.3e-05 0.0061 17.8 3.3 1 21 203 223 203 225 0.94

7 9 8e-06 0.00092 20.4 2.3 1 23 231 253 231 253 0.98

8 9 9.3e-07 0.00011 23.3 0.1 1 23 259 281 259 281 0.99

9 9 0.18 20 6.7 0.6 1 13 285 297 285 299 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.7e-06	0.0002	22.5	0.5	3	23	54	75	52	75	0.92
2	9	0.0029	0.34	12.3	0.0	1	23	81	103	81	103	0.97
3	9	8.4e-05	0.0096	17.2	2.5	1	21	110	130	110	131	0.95
4	9	0.00017	0.02	16.2	1.7	2	23	143	164	142	164	0.97
5	9	1.1e-06	0.00012	23.1	1.5	1	23	175	197	175	197	0.99
6	9	5.3e-05	0.0061	17.8	3.3	1	21	203	223	203	225	0.94
7	9	8e-06	0.00092	20.4	2.3	1	23	231	253	231	253	0.98
8	9	9.3e-07	0.00011	23.3	0.1	1	23	259	281	259	281	0.99
9	9	0.18	20	6.7	0.6	1	13	285	297	285	299	0.89

Sequence Information

Coding Sequence: ATGGAATATTGCAACTTCAGCTCAGACATGACTGTAAGAATGGCTGAAATGGAAAGAAACATCGACAAAATCGAGAAGGAAGCTTTAATAATGGAGAAGAAAGACATCTGCTTTTGCTGTGGAGAAAGCTATGATACCTACCACtcGGGTCACATCAATTGTCCGGAATGTCCGAAAACTTTTAAGACACAATTCAGTCTGGACCGTCACATGTTCTTAATCCATTCGGATAAAAATGACTTTCCATGCGACATTTGTAATGGTCGCATTAGAACAGCAGCACTGTTGAAATTACATATGGAACAGCACACGAACCGCGGCAGACCATTTGTTTGCAAAAAATGTGGAAAGGATTTCACTAGAGAGTGTAGGTTCCAGTGGCACATGAAAGTATCTTTATGTGGCGAAGGACAAAAGGAAGTTATACCATGTAAAGTATGTCGAAAGGAGTTCTTTCATGTTGATAGTTTGCGGCTGCATTTAAAAACCCACTTACGCCAAGGTACTCCCAAGAAGGAAAAGTACACGTGTCCTTTTTGTAAGAAAATGTCTTACAGTCAATCGTCACTTAACATACACATTCGGACCCACACAGGTATACGACCATTTGATTGCGATCTGTGTGATAAGAGCTTCACATCGCTGGACTCACTAAAGCTGCACAGGAGATGCCATACTGGGGAAAAACCGTACTCTTGTTCAGTGTGTAATCAAAATTTTGCTGTGAAACACGCTCTTAGTCGACATATGAAACGACATACTGGACATAAACCATATGTTTGCGAAGAATGTGGAAAGCGTTTTGTTGAAACAGCACAGCTGCGGATTCATGCTCGAACACACTTGAGGCCTTACGAATGTCGCCAGTGCCCCGAAAAGTTCAAAACTGAGGGACAGTAA
Protein Sequence: MEYCNFSSDMTVRMAEMERNIDKIEKEALIMEKKDICFCCGESYDTYHSGHINCPECPKTFKTQFSLDRHMFLIHSDKNDFPCDICNGRIRTAALLKLHMEQHTNRGRPFVCKKCGKDFTRECRFQWHMKVSLCGEGQKEVIPCKVCRKEFFHVDSLRLHLKTHLRQGTPKKEKYTCPFCKKMSYSQSSLNIHIRTHTGIRPFDCDLCDKSFTSLDSLKLHRRCHTGEKPYSCSVCNQNFAVKHALSRHMKRHTGHKPYVCEECGKRFVETAQLRIHARTHLRPYECRQCPEKFKTEGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -