Basic Information

Insect: Microdon myrmicae
Gene Symbol: -
Assembly: GCA_963931805.1
Location: OZ007500.1:157146490-157148632[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.7e-05 0.0065 17.7 4.7 2 23 221 243 221 243 0.96

2 11 0.00037 0.042 15.1 5.4 1 23 277 299 277 299 0.99

3 11 1.2e-06 0.00014 22.9 0.4 1 23 305 327 305 327 0.97

4 11 2.1e-06 0.00024 22.2 0.9 1 23 333 355 333 355 0.98

5 11 5.8e-06 0.00067 20.8 1.6 1 23 361 383 361 383 0.98

6 11 7e-06 0.0008 20.6 1.2 1 23 389 412 389 412 0.97

7 11 0.0019 0.21 12.9 1.1 1 23 424 446 424 446 0.97

8 11 0.00011 0.013 16.8 0.2 1 23 453 476 453 476 0.96

9 11 3.1e-06 0.00036 21.7 3.3 1 23 482 504 482 504 0.99

10 11 0.0048 0.55 11.6 0.2 1 23 517 539 517 539 0.96

11 11 0.00025 0.028 15.7 1.2 1 23 545 567 545 567 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.7e-05	0.0065	17.7	4.7	2	23	221	243	221	243	0.96
2	11	0.00037	0.042	15.1	5.4	1	23	277	299	277	299	0.99
3	11	1.2e-06	0.00014	22.9	0.4	1	23	305	327	305	327	0.97
4	11	2.1e-06	0.00024	22.2	0.9	1	23	333	355	333	355	0.98
5	11	5.8e-06	0.00067	20.8	1.6	1	23	361	383	361	383	0.98
6	11	7e-06	0.0008	20.6	1.2	1	23	389	412	389	412	0.97
7	11	0.0019	0.21	12.9	1.1	1	23	424	446	424	446	0.97
8	11	0.00011	0.013	16.8	0.2	1	23	453	476	453	476	0.96
9	11	3.1e-06	0.00036	21.7	3.3	1	23	482	504	482	504	0.99
10	11	0.0048	0.55	11.6	0.2	1	23	517	539	517	539	0.96
11	11	0.00025	0.028	15.7	1.2	1	23	545	567	545	567	0.98

Sequence Information

Coding Sequence: ATGTCGCATGACAtatgtctagacagaaatacgtTTCTAAAAAAAACCTGTCGAACCTGTGGTCGATATGATCCAAATGACTTTATGAAATTCCACCAGATTTTCAATGCTATTGTTCTTGACGAGCCCAGCGCAGAGCTTGCTCCAATATTCAAGGAGTTCCAAATCTGGAATCTAGAGGTAACACCATTCGATGGACTGCCACAACAAATATGTGGCGACTGTTTGGAAAGGTTCGTTCAAGTGAAACTATTTAGAGAAGAAGTTATGGATTCCCAACAGTTCCTCAGAACGTATCTTAAAGATGGCGATGACCCCATCGACAACAGTGCCAAACTGACCTTTGAGACACTGTCAATGTCCGTGGGCACAGACGCTTGCGTTGGGTACATATCGCCAAGTAAATTAATCGAATATGTCGGATCGGAGGAGGAAAATGAAAGTGCCACTGTCCTTGGCAAAACAGACACCTTTGAGGCGAATGAAAGTGATTACCTGTTCAATAATCCCAATCGAATAGATGTCGAGAACGTGATAGAATTAAGTACGAAAGTGTCGGAAATTAGAGAGTTCAAGGGCCCTTCGAAGCAGTTCGAGAAGGTATCTGAAACTGAAATCAGCGAGAAGGAGGAAGCGCTAGAGATCCCGAATATTGGTGCGAAGTGTGAAATATGTTTGAAGACATTTCGATCGGCGGATCACTTAATGCGCCACCATCGTTTGTTTCACATTCGTCAAGACAGGACGTGCTCCGTTTGCAGTAGCAAATTTGAGAAGATCACCCAGAGGTCGTTCGACTACCATGTAAAGACGCATCTCACCAAGAAGTATAAGTGCAGCTATTGCGAGAAAGGATTCCACCAGAAAATCCACATGATCAATCATGAGAGGACGCACACTAAGGAAAAACCATTTGCTTGCGAGTTCTGTGGCAAGAGTTTCCGGCAACAAGTCGGCTTACAGGAACATCTTATGAAACATAAGAATTCACAACCCTTCAAGTGTGAAATTTGTGGCAAAGGGTTCGCTCATCGTTCTGGCGTCCGTTCCCATTTAAGACTTCATGCCAATGACAAACGGTTCCAGTGTGACATTTGTGGAACTGGTTTCTATCAAAAGATCCATCTGACACTTCACCTAATGAAGCACAAGGGCGAGAAACCGTTCCAATGTGAATTTTGTCCAAAAGCATTCCGGCAGGCCTATCAATTGGGCAACCACATGCACTCGGTACACTTTAATACTCTGGATAGTATTCAAAATGGATGTTTCCATTGCCCAGAATGTGGCAGGGAGTCCACCAATATCATAGACTACATAAGGCACAAGAAATCCCACGATAATATGGAGCAAAAGTTCATTTGCCAGCAGTGCGGCGCGGCATTCGTAAGGGAGAACCATTTAAGTATACACATTGACACAGTACACCTAAAGCCGACTACATACACCTGCACCTTCTGCAAGAAGACCTTTAATCATGCCGCTAATCTCAATTCCCATTTGGAGACCCATCAAGGTATCCGAGAATTCCTACCAAATGCCGAGAAATATAAGTGCACATTTTGCGATAAGTGGTTTACCGCCAAAGGAGCTTTGCAGATGCACGAGGCCATACACACTGGGAAGAAGAACTTCAAGTGCAACTTTTGCAGCCAATCGTTCGTGTATCGACGCAGTCTCGGAGCACATATTATGAATCATTTTCGGGATGAGAACGAGGAAGAACTGACAATAAACGAGGACAACATGGATGAAGACGACTTCTTCTGTTATGGATCCGACTTGGATATAGGCGATGAACTGGGGCTTGACATGTACCCATTAGAATTAGATGAAGGATAG
Protein Sequence: MSHDICLDRNTFLKKTCRTCGRYDPNDFMKFHQIFNAIVLDEPSAELAPIFKEFQIWNLEVTPFDGLPQQICGDCLERFVQVKLFREEVMDSQQFLRTYLKDGDDPIDNSAKLTFETLSMSVGTDACVGYISPSKLIEYVGSEEENESATVLGKTDTFEANESDYLFNNPNRIDVENVIELSTKVSEIREFKGPSKQFEKVSETEISEKEEALEIPNIGAKCEICLKTFRSADHLMRHHRLFHIRQDRTCSVCSSKFEKITQRSFDYHVKTHLTKKYKCSYCEKGFHQKIHMINHERTHTKEKPFACEFCGKSFRQQVGLQEHLMKHKNSQPFKCEICGKGFAHRSGVRSHLRLHANDKRFQCDICGTGFYQKIHLTLHLMKHKGEKPFQCEFCPKAFRQAYQLGNHMHSVHFNTLDSIQNGCFHCPECGRESTNIIDYIRHKKSHDNMEQKFICQQCGAAFVRENHLSIHIDTVHLKPTTYTCTFCKKTFNHAANLNSHLETHQGIREFLPNAEKYKCTFCDKWFTAKGALQMHEAIHTGKKNFKCNFCSQSFVYRRSLGAHIMNHFRDENEEELTINEDNMDEDDFFCYGSDLDIGDELGLDMYPLELDEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -