Mmyr029732.1
Basic Information
- Insect
- Microdon myrmicae
- Gene Symbol
- -
- Assembly
- GCA_963931805.1
- Location
- OZ007502.1:123436919-123440009[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 4.7e-05 0.0053 18.0 1.7 2 23 361 382 360 382 0.97 2 15 3.9e-05 0.0045 18.2 1.1 1 23 388 410 388 410 0.98 3 15 5.9e-05 0.0068 17.6 0.2 1 23 416 439 416 439 0.97 4 15 0.00012 0.014 16.7 2.0 1 23 454 476 454 476 0.98 5 15 5.6e-05 0.0065 17.7 1.9 1 23 509 531 509 531 0.97 6 15 1e-05 0.0011 20.1 0.9 2 23 642 663 641 663 0.97 7 15 2e-06 0.00023 22.3 2.8 1 23 669 691 669 691 0.98 8 15 0.082 9.4 7.7 0.4 1 23 697 720 697 720 0.97 9 15 0.0014 0.16 13.3 3.7 1 23 731 753 731 753 0.98 10 15 0.00038 0.043 15.1 1.5 1 23 765 787 765 787 0.98 11 15 0.019 2.1 9.8 1.8 1 23 793 815 793 815 0.97 12 15 0.00015 0.017 16.4 0.2 2 23 821 843 820 843 0.95 13 15 0.083 9.5 7.7 0.5 1 23 851 874 851 874 0.95 14 15 0.005 0.57 11.6 0.3 2 23 883 905 883 905 0.91 15 15 0.0053 0.6 11.5 1.5 2 23 911 932 910 932 0.97
Sequence Information
- Coding Sequence
- ATGTCGGTTATACTGGATGATTCTATATGTCGGGTGTGCTTAAGTACATCTGGCAACATTACAATCTTCGATGGATGCGGCAAGGATGATCAGTTCCGCTTCTGCACTTCATTAGAAGCCTCGGAGAATGATGGACTTCCATCAAAACTATGCCCGAAGTGTAACCACAATCTTAAAGTCGCTTACGAATTCCGATTCCAAGCAATCTACGCCGAGAAGTACTTCAGAAAAACAATATTCCTGCCAGTGTTGAAAAAAGAAGATTCAGTAAATCCATTTGTTGTGATAACTAATATACGTGATTCCAATGGCGAGTTGGATGAAAATATGGCGGAGATCGATGCATTATTGGCTGTAGATACAAAAGTGCCGATCGAatctgacgatgatgatgatacctcgaATTCAAGACTTCTCATTGACGAAACCAGTGACGAAGACGATCGGCAGATTGAGGTACTGGGAATAGAAGCTATtgaaaaagaacagaaaaaaattaaagtagaaaataTGAATCTTCCGTCCCAACCAATGGCGGATAATTCGGGAATTATTCCCTCGTCTGTGTCTGTAAGCAATCAGCAATTAATAACAGAACctgttcaattcaatgcaattagTACTCGGAGTGAAGGAGTGGATAATAAAGCTGCCATGAATTCAAATTTAAAGATGGATCTCGAAGAGAATGTAGAATATATGGACACCTCGTCCTTGCAAATAGAATCAGAGAGTAAATTCGATGAAGCTTCATTGTACGATCATTTCAAAACTGATTCGCAAGACATAACTAGGCAAGATGTGTCTATTCCATTTGACTGTGGGGTATCATTGCCAACAGGTTCGCAACAAACTGCGCCTAACGCAGCCACGTATGACATCGGTCATGACCCGCATTATACATCACTACCTTATGATGATTCCCTATGTCCAGTGGAACCAGCAAGGCAAACAAATCCTATCGACGAAGCTGTTACCAATTATGATAAGCATGAAACTGCTGGGGAGACTGAAGACcttgaaataaaaaagaaatctaGGAAATCCAAGCGGGATGGACATACTTCGAAAGGCAAGATCGAGTGCAACATTTGTGGAAACACCTTTACACACTTGAACTCCCTGAAAACTCATCTTCTAAAACACTCTGGTGAGAAACCATTCACATGTGAGTTTTGTAACAAAGCTTTTGCTAGAAAAACAGTCTTAAATATTCATCGACGTTTGCATACTGGTGAGAAGCCATACAAATGTGCTCTATGTTCGGAAGCATTTGTAACCAAGGAGGCTTTAATGCGGCATGTTCAAAAAAGTCACGAGGAAAAAATTGGTGCAAATTTTCGCAAGGATAAAGTGTCTTTTATCTGCTCTATATGCAACAAAGCACGTTGTTCCAAATATTCATTAGCGTCACATATGAAAATACACACTAACGAGGCTAGAGCCCGCCGAAAAGTGATaagaaaaaagaaggaaaataCCTCAGAATCTAATGGTTCTAAATCAACGCAGACTCTCTTAAAATATTCTTGTAAAGTTTGTCAAAAAGGCTTTTCCAACAAGTGGGAGCTGTGCACGCACGCCGAGTCACACCTCACAAACAAAACCCATGATGGAAAAGATGACTTAACTAAGCCTAAATTGCCCTCACTTTCTGAAGACTCCAAAAGAACTGACTCCCCCGTACAGCCATCAGAAGATGattctttaaaaaaaagaaaatcaccAATTCATAAAACTCGAGAAAAGAAAGTAACTATAGAGTCTTCTAACACCGATGTAGACTCGTGTAGCGAGAATCCCTCAAACAGTGAAGATGAAAAGGACTACAAGAGAAATGATAGAAACTGCAAGAGGAAGACAAGGAAAGGCAATCGTTCCCAGCGGGAAAACCTCAAATCACTGCGAGCAACAAGTAAGATCGAATGTCACATTTGTGAGGCAGTTTTTACCCATCCAACATCGCTAAAATCTCACATGCTTGTACATTCCGGCGAGCGTCCATTCAAGTGTGAACACTGTGGAAAGTCTTTTGCTAGAAAAACAGTTCTTACCATTCATCGAAGGTTACACACAGGAGAGAAGCCTTATAAATGTCCTGTGTGTGAAAGCGCTCATGTCACCAAAGATGCTGTCATGCGTCATATGTCAAAGGATCACGATGAAGACAGAGAAGCTGATCGTATTAAGTTCACTTGTGGAATTTGTCACAAATCCATGGGAACGAAATATTCATTACATGCTCATATGAAATTACATGAACAAGACACATCAACGAGTACAGATGTCACATATTCATGCAGCACATGCTCCaattcctttgagtccaaagtaGAATACACCAAGCACATGGAATCCCACAATCCTCAAAGGAATTTCCAATGTGACATCTGCCAAGCAACCTTCGAAAAAAAGTTCAAGCTTCTGTTTCATCTACAGACCCACAAAATCGAGGATTTGCCATGCAAGAAATGTGgcgaaatattcacaataagGGAAAACCTGCTGCAGCACATCAAATTGCAACACATGGATCCTCGTAATATGGACTTTCAATGTCCACATTGTAGTATTGCACAATATGACACCCGAGACCTTAAATTACACATGATCAACGCTCACGACGTTAGCATGGGGGCCTTAAACTCCTGTGATATGTGCAGCGAGTCCTACACGACTGCTGCAGAGTACTATAAACATATGTACGACAAGCATGATACCATCAGTAAAACATGTACGGATTGTGAAAAGTACTTTGATTCCAGGAAAGTCTTCGACAAGCACATCCTGACTCACTACATATAG
- Protein Sequence
- MSVILDDSICRVCLSTSGNITIFDGCGKDDQFRFCTSLEASENDGLPSKLCPKCNHNLKVAYEFRFQAIYAEKYFRKTIFLPVLKKEDSVNPFVVITNIRDSNGELDENMAEIDALLAVDTKVPIESDDDDDTSNSRLLIDETSDEDDRQIEVLGIEAIEKEQKKIKVENMNLPSQPMADNSGIIPSSVSVSNQQLITEPVQFNAISTRSEGVDNKAAMNSNLKMDLEENVEYMDTSSLQIESESKFDEASLYDHFKTDSQDITRQDVSIPFDCGVSLPTGSQQTAPNAATYDIGHDPHYTSLPYDDSLCPVEPARQTNPIDEAVTNYDKHETAGETEDLEIKKKSRKSKRDGHTSKGKIECNICGNTFTHLNSLKTHLLKHSGEKPFTCEFCNKAFARKTVLNIHRRLHTGEKPYKCALCSEAFVTKEALMRHVQKSHEEKIGANFRKDKVSFICSICNKARCSKYSLASHMKIHTNEARARRKVIRKKKENTSESNGSKSTQTLLKYSCKVCQKGFSNKWELCTHAESHLTNKTHDGKDDLTKPKLPSLSEDSKRTDSPVQPSEDDSLKKRKSPIHKTREKKVTIESSNTDVDSCSENPSNSEDEKDYKRNDRNCKRKTRKGNRSQRENLKSLRATSKIECHICEAVFTHPTSLKSHMLVHSGERPFKCEHCGKSFARKTVLTIHRRLHTGEKPYKCPVCESAHVTKDAVMRHMSKDHDEDREADRIKFTCGICHKSMGTKYSLHAHMKLHEQDTSTSTDVTYSCSTCSNSFESKVEYTKHMESHNPQRNFQCDICQATFEKKFKLLFHLQTHKIEDLPCKKCGEIFTIRENLLQHIKLQHMDPRNMDFQCPHCSIAQYDTRDLKLHMINAHDVSMGALNSCDMCSESYTTAAEYYKHMYDKHDTISKTCTDCEKYFDSRKVFDKHILTHYI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -