Mmyr026869.1
Basic Information
- Insect
- Microdon myrmicae
- Gene Symbol
- -
- Assembly
- GCA_963931805.1
- Location
- OZ007502.1:9235304-9237691[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2e-07 2.3e-05 25.4 0.8 3 23 175 195 174 195 0.98 2 13 1.5e-07 1.7e-05 25.8 2.0 1 23 201 223 201 223 0.98 3 13 0.0062 0.71 11.3 1.4 2 23 230 251 229 251 0.95 4 13 9.6e-05 0.011 17.0 0.3 1 23 257 279 257 279 0.98 5 13 0.00027 0.03 15.6 0.9 1 23 285 307 285 307 0.97 6 13 3.7e-05 0.0042 18.3 1.4 1 23 420 442 420 442 0.96 7 13 0.025 2.9 9.4 3.6 2 23 449 470 448 470 0.95 8 13 4.7e-07 5.3e-05 24.3 0.5 1 23 476 498 476 498 0.98 9 13 0.015 1.7 10.1 1.1 1 23 504 526 504 526 0.87 10 13 0.01 1.2 10.6 5.0 2 23 616 637 615 637 0.96 11 13 2.2e-05 0.0025 19.0 0.4 1 23 643 666 643 666 0.96 12 13 0.0027 0.31 12.4 2.0 2 23 673 694 672 694 0.96 13 13 7.8e-06 0.00089 20.4 0.7 1 23 700 722 700 722 0.99
Sequence Information
- Coding Sequence
- atgaaatgctcGGATATTTTAATTAAAAGAGATACAAACGAACCAAGAAACATCTGCTCGAAATGCCTCAACGACCTAAACGTCGCCTATAAACTCCGTCGAACCTGCGAGCAGTCTTTCTCAATAATCAAAACACTACTAAATACACCTCGCCAAGAATCTGATATAAAAGACTTACGGAAAACGGCATCAACCATATCAAACCCAAAACTTGACATCTGTATTAAGGATGAAATTGTGCACAATGCTGTAGTCGACGATACTTGCGAAAACATATCCACCTCTCTTGATTTAGAGTATCGAATTGATACTAAATCAAAGTCTGTTGATGAAGTTCCTGCAGATACCTGTGCCCTGAGCAACACCATGGAAGTAAATAATGAGAATGCCAATAAGAGTAATAAAACCGAAGAGGAGATGGATTGTGAAATTTCAGGAAGCAGACAGCGcccaaaaaaattaatttcaaaatcGTATGCAGATGGAAGCGTCAAAACTGCTTTTAAAAATAAACAGAAGATTTGCGAGATATGTGGGCGCAGTTTTCGACGTAAAGGCCTACTCGATAAACATATGCGACGTCACCAAAATAAAGGGCCATTCaattgcgatcattgtgataaagcTTTTGTGAGGCGTGGATCATTACGGCGTCATTTGAGAGTGCACACTGGTGATAAGCCACTCaagtgtcaatactgtgatcggcGATTCTCTGATTACGGCGTCAGAAAGAACCACGAGAGCACGCACACCGGTGAAAGACCATACGTATGCCCGACTTGTGGTAACAGCTTTGCATATCGTGGTGGCCTGACAATGCACCTCCATATTCATACTGACATTAAGAAATTCGTATGCAGAGAATGTGGGAAAGGATTCATGAGAAAGCTGCTTTTTGAAAAACACGTATCCCGCCACTTAACTCGTGATAAATTGTATAAATCATCAGAACACAAACAAAACAAGCTCATAGaaaaagaaatcttgcaaattgaGAAAAACGCGaactcgaatgaaattaacaccaaacatgaaattgtaaacAACGCTGTACTCGACGATACTTGCGACAACAAATTCACTGTTCTTGATTTAGAGAATAGAATTGATACTGAATCAAAGTCTGTTGATGAAGTTCCTGCAGGTACCTGTGCCCTTAGCAACGCCATGGAAGTAAATAATGAGAAAGCCAATGAGAGTCATAAAACCGAAGAGGAGATGAATTGTGAAATTTCAAGAAGTAGCACACggcctttcagttgcgatcattgtgataaaccTTTTGGGACCCTTAAAAAATTACAGCGTCATGTGATATTGCACACTGGTCATAAGCCACTCAAGTGTCAATACTGCGATCGTCGATTCTCTCATTACGGCGTCAGAAAGAATCACGAAAGCACACACACTGGTGAAAGACCGTACATATGCCCGGTTTGTGGTAACAGCTTTGCACATCGTAGTGGCCTGACAAAACATCTAAGAATTCATAATGGTGCAAAACCCTTTGAGTGTAAAGAATGTGGCAAAGGATTCATGAGAAAGCTAATTTTTGAAAAGCACGTATCTTTTCATCTGGCTCGAGACGAATTAGATAAATCATCGCAACACAAACCAAACGAACGACTACCAAAAGAAATCTTTCAAATTGAGGAAAACGTGaactcgaatgaaattaacatcaaacatgaaattgtagagattGCTGAATTTGGAGATAATTGTGAGGACGGGAACACATCCTGTGTCGACTTAAAAAGTGACCCTGGTACTATAGCCAGAGATGATAAAATCATACAGCTACCGAATGGAGAAATCCCCAAAACGGGAGTGTCTATGAAGGTTTGTGGCATATGTTGTCGAGGTTTTAAGAACCAATTTGACCTTCATAgccacatgagacgccataacaatgaacgacctttcagttgcgatgatTGTGACAAAACATTTGTGGCTCGTGCAGGATTACAGCGTCATCATTTGGTTGTGCACAATGGTCAGAAGCCACTCaagtgtcaatactgtgatcgtcgaTTTTCTGACTACAGCGTCAGGAAGAACCACGAAAGCACACACACGGGTGAAAGACCATACGTATGTCAGACTTGCGGTAGgggctttggatattctaaaagCCTGACGCTACACCTTCGAACTCATACAATATCCCTGAACAAAGAAGGCGAAAAAGAATTCGTGAAAAATGTCCTCTTTGAAAAACAGATAGTTCATCACTTGACTCGAGATGAATTGGATAAATCATCAGAGCATAAACAAACGAAACGGTTAGAAAAGAATATCGATCAAACAGAGGTATGTACTAATGCAAACGAAAATGAGATCAAACGTGAGGTGGAACCCATCGAGGAGGAAGATAATTAA
- Protein Sequence
- MKCSDILIKRDTNEPRNICSKCLNDLNVAYKLRRTCEQSFSIIKTLLNTPRQESDIKDLRKTASTISNPKLDICIKDEIVHNAVVDDTCENISTSLDLEYRIDTKSKSVDEVPADTCALSNTMEVNNENANKSNKTEEEMDCEISGSRQRPKKLISKSYADGSVKTAFKNKQKICEICGRSFRRKGLLDKHMRRHQNKGPFNCDHCDKAFVRRGSLRRHLRVHTGDKPLKCQYCDRRFSDYGVRKNHESTHTGERPYVCPTCGNSFAYRGGLTMHLHIHTDIKKFVCRECGKGFMRKLLFEKHVSRHLTRDKLYKSSEHKQNKLIEKEILQIEKNANSNEINTKHEIVNNAVLDDTCDNKFTVLDLENRIDTESKSVDEVPAGTCALSNAMEVNNEKANESHKTEEEMNCEISRSSTRPFSCDHCDKPFGTLKKLQRHVILHTGHKPLKCQYCDRRFSHYGVRKNHESTHTGERPYICPVCGNSFAHRSGLTKHLRIHNGAKPFECKECGKGFMRKLIFEKHVSFHLARDELDKSSQHKPNERLPKEIFQIEENVNSNEINIKHEIVEIAEFGDNCEDGNTSCVDLKSDPGTIARDDKIIQLPNGEIPKTGVSMKVCGICCRGFKNQFDLHSHMRRHNNERPFSCDDCDKTFVARAGLQRHHLVVHNGQKPLKCQYCDRRFSDYSVRKNHESTHTGERPYVCQTCGRGFGYSKSLTLHLRTHTISLNKEGEKEFVKNVLFEKQIVHHLTRDELDKSSEHKQTKRLEKNIDQTEVCTNANENEIKREVEPIEEEDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -