Mmyr026759.1
Basic Information
- Insect
- Microdon myrmicae
- Gene Symbol
- -
- Assembly
- GCA_963931805.1
- Location
- OZ007502.1:7231112-7237350[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.6e-06 0.0011 20.1 1.3 1 23 8 30 8 30 0.98 2 19 6.6e-05 0.0076 17.5 0.2 1 23 36 58 36 58 0.97 3 19 0.00065 0.075 14.4 0.7 3 23 323 343 322 343 0.98 4 19 4e-06 0.00045 21.3 0.2 1 23 349 371 349 371 0.94 5 19 0.15 17 6.9 6.7 1 23 377 399 377 399 0.98 6 19 7.7e-08 8.8e-06 26.7 1.2 1 23 405 427 405 427 0.98 7 19 1.1e-05 0.0013 19.9 2.6 3 23 571 591 570 591 0.98 8 19 2.3e-06 0.00026 22.1 1.2 1 23 597 619 597 619 0.98 9 19 0.012 1.3 10.4 3.6 1 23 625 647 625 647 0.98 10 19 4e-06 0.00045 21.3 0.3 1 20 653 672 653 675 0.94 11 19 0.012 1.3 10.4 0.5 1 23 681 703 681 703 0.86 12 19 0.001 0.12 13.7 1.1 3 23 820 840 819 840 0.98 13 19 6.6e-05 0.0075 17.5 4.9 1 23 846 868 846 868 0.98 14 19 0.0014 0.16 13.3 3.1 1 23 874 896 874 896 0.97 15 19 0.00052 0.06 14.7 5.5 1 23 902 924 902 924 0.97 16 19 3e-05 0.0034 18.6 0.9 3 23 993 1013 992 1013 0.98 17 19 0.0096 1.1 10.7 0.9 1 23 1019 1041 1019 1041 0.97 18 19 0.01 1.2 10.6 2.7 1 23 1047 1069 1047 1069 0.96 19 19 0.001 0.12 13.7 0.2 1 23 1075 1098 1075 1098 0.85
Sequence Information
- Coding Sequence
- ATGCACACGGGTGAAAAGCCGTTTGTATGCTCAACTTGCGGCAAGAGCTTTACATATTCTCATGGCCTGGCGGAACATCGCCAAATTCATACTGGTGTTAAAAAATTCATgtgcgaagaatgcggcaaagcgTTTGACAAACGGCTGCTTCTTGAAAGACATGTAGCTCGCCACCTGAGTcaagataaattggataaatcgtcggagcACAAACCAAAGAAACTACTGGGAAAGGAAATCCTTCAAATAGAGGAATGCGCTAAATcggatgaaattaacatcaaacataaaattaaagaaaacgatGTAGTTAACGATGCCCATGATAACGACAACTCACCCTGTATTGACTTGGGAGACAACATTGATAGTGAAGCTAAATTTGCCCTGAAGGATCAGCCAGAAGCCCGTTTCCAGGGTAAcgctattgaacaaaatgatgtgAAACCCAATGAAAaACTCGATGTAGTCGACGATACCCACAATAACGCCAACTCGCCGTGTATTCAATTAGGAGACAACATTGATAGTGCAGCTAAATTTGCCCTGAAGGATCCGGCGGAAGCCTGTTTCCAGGGTGGTGCTATTCAACAAAATGATATAAAAGCCAGTGAACGTAATAAAATCGAACAGAACGATGTAAACGCAACACATGACATCTGTATTAAGAATGAAATTGTAGACGAATTTGGAGTCGACGGTCCTTATAGCGACAATGGCACAACATGTTTGAACTCGAAAGATGAGCCAGGTACTGACGCCAGAATAGTCACCGAGAATCGTTCAAATGCCTGTGTGCCTAACGATATCGAACTTAATCATGTGAAAGCCAATAAATGTAATAAAACCAAACAGGAGGGGAATAATGAAATTTCCACACGGGTGAGAGGTCAATCTAAGAGTTTAACTGAAGTATTCTGTACAAAGTCAAGCCTTAAGTCGGCTTGTAAGAGAAACccgaagatttgtgagatatgtaatcgtacTTGTAGAGGTCAGGGTGAACTGGATATTCACATCAGACGTCATAACGATGATCGACCTTTCAGCTGTGATGATTGTGACAAAGCCTTTGTGACCTCCACAGAATTACGGCGTCACGTGGTGCTCCACACTGGTCAGAAGCCTTTCAAATGCCAGTACTGTGACCATCGGTTCCTTGACTCCCACAACAGAAAAAACCACGAGCGCATACACACCGATGAAAGGCCATACGTATGCCCGACATGTGATAAGAGCTTTAGGTATTCTTACGCTCTCACACGACATCGCCGAATCCATACCGGGGTAACGAAATTCGTGTCCAAAAATTGCGACGAGGGACTATCCAAAAATGTGCCTTTTGAGAAGCACCCAATCCTTCAGTTGGCTCAAGGTAAGTTGAATAAATCGTCGGAGCACTTGCAAAAGAAATGGCAAGAAAAAGAAATCGATAATttgaatgaaattaacatcaaacatgaaattatagacAACGCTGCGGTGGACGGTCGGGATACTGAAGCTGAATTTGTTGTAGATCGTGCAGGGGGCTGTGTCGAGAGTAGTGCTATGGAACTAAATAATGTGAAAGCTAATGAaagtaataaaatcaaacaggagTCGAATAATAAAAATGTAAGACCACTCAGAGATCAGTCAAAAAGTTTAACTGAAGTGTCGCGTGCAAAGCTAAGTCTCAAGTCTACTTGTAAAAGAACGCTGAAAATTTGTAAGATATGTAATCGCAGTTGTAAGAGTCAAGGAGAGCTcaatattcacatgagacgccataacaatgagcgaccttacAGTTGTGATCATTGTGAGAAGGCTTTTGTAACCCCAACGGAACTACGACGTCATACGCTAATGCACACTGGGGAGAAGCCTTTCAAATGCCAGTACTGTGACCGTGGATTCCTTGACTCTCACAATAGAAAAAACCACGAGCGCATACACACCGATGAAAGACCATACGTATGCCCGACTTGTGGCAAGAGTTTTAGGTATTCTTACGCCCTGACACAGCATCTTCCAATTCATACTGGGATAAAGAAATTCGTATGCAAAGAGTGCGGTAAGGGATTCGACACAAGGGTGCTTCATAAAATTCACGTAGCCCTTCACCTGACTGAAGATGAATTGGATAAATCGCCAGAgcacaaacaaaagaatccggagAACAAAGAAGTCCTCAAGATGAAGAAATGCTCCAATCCCGATGAAATTAATGTCAAACATGAAATTGCAGATAATGCTGTAGTTGACGATCCTGATACTGTTGAAGATCATGTAGAAGTCTCTGTCCAGAGCAACGTTATGGAAACGAATAATGTGAAAGGTaatgaaagtaataaaaccaAGCAGGAGACGGACAATGAAATTTCAAAAGTCAAAGGTCAGTCAAAGAGTTTAATTGAAGTATCTTGTGCAAAACCAAGCCTTAAGTCGGCTGGAAAGAGAACCCTGAAGATTTGTGAGTTATGTAATCGTACTTGCAGGGGTCAGGGGGAACTCGATATTCACATGAGGCGCCACAAAGATGAACGACCTTACAGTTGTGACCATTGCGACAAAGCTTTTGTTACCATGACGTGTTTACGGCGTCATGCGAGAAGGCATACTGGCGAGAAACCCTTCACATGCAAACACTGTGGTCGTGGGTTTGTTGACTCCCACGCCAAAAAAAATCACGAGCTCATACACACAGATGAATGGCCATACATATGCCAAAAATGTGGCAAACGTTTTAGGACTTGTTACCGCTTGACGCAGCATTTTCAAGTTCATATTGGGGTAAAGAAATTCACAGTGGCCTGTGTGCAGAGTAACGGTATGGAACTAAATTGTGACAAAACCTTAGAGAGTCACAAAATCAAGCAGGACGCGAATGATGAGGTGTCTATACGACCCAGCAGTCAGTCAGAGATTTCAATACAAGAATCCAGTGAAAAGCCACGTCTCAATCCTACTTATAAAAGCCCCCTGAAGATTTGTGAAATATGTAAGCAAAGTTTTAGTAGTCAACGGAAACTCGATATTCACATGAGAAGCCATACCGAAGAGCGCCCTTTCAGATGTGATCATTGCGAAAAAGCTTTTGTGGCGGAAGCTGAATTGGAGTGTCATGTGAGAGTGCACACTGGTCAGAGgagttacaaatgtcaatactgtgatcgtcggTTCTCTGGGTACAGCgtcaaaaagaaccacgagagtacgcacacgggtgaaaggccatacGTGTGCTCGACATGTGGCAAGAGCTTTGCCACATATTCTGGCGGCTTGAGGAGGCATCTTCTTATTCATAAGCGACAGGAAATGTATATGCAAAAAATGCGGCAAAGAAGTCATGAACAAGATGGAAACCATGTAGTCCGTCACATGGCTCAAGAGGAATTGGATAAATCATCGGAGCACAAACAAAAGAAGAtactagaaaaagaaatctttcaaatagaggaatgcGCCAATTCCAACGAAATTAGCATCAAACATGAGGTGAGACTCATCGAGGAGGAGATTAATTAA
- Protein Sequence
- MHTGEKPFVCSTCGKSFTYSHGLAEHRQIHTGVKKFMCEECGKAFDKRLLLERHVARHLSQDKLDKSSEHKPKKLLGKEILQIEECAKSDEINIKHKIKENDVVNDAHDNDNSPCIDLGDNIDSEAKFALKDQPEARFQGNAIEQNDVKPNEKLDVVDDTHNNANSPCIQLGDNIDSAAKFALKDPAEACFQGGAIQQNDIKASERNKIEQNDVNATHDICIKNEIVDEFGVDGPYSDNGTTCLNSKDEPGTDARIVTENRSNACVPNDIELNHVKANKCNKTKQEGNNEISTRVRGQSKSLTEVFCTKSSLKSACKRNPKICEICNRTCRGQGELDIHIRRHNDDRPFSCDDCDKAFVTSTELRRHVVLHTGQKPFKCQYCDHRFLDSHNRKNHERIHTDERPYVCPTCDKSFRYSYALTRHRRIHTGVTKFVSKNCDEGLSKNVPFEKHPILQLAQGKLNKSSEHLQKKWQEKEIDNLNEINIKHEIIDNAAVDGRDTEAEFVVDRAGGCVESSAMELNNVKANESNKIKQESNNKNVRPLRDQSKSLTEVSRAKLSLKSTCKRTLKICKICNRSCKSQGELNIHMRRHNNERPYSCDHCEKAFVTPTELRRHTLMHTGEKPFKCQYCDRGFLDSHNRKNHERIHTDERPYVCPTCGKSFRYSYALTQHLPIHTGIKKFVCKECGKGFDTRVLHKIHVALHLTEDELDKSPEHKQKNPENKEVLKMKKCSNPDEINVKHEIADNAVVDDPDTVEDHVEVSVQSNVMETNNVKGNESNKTKQETDNEISKVKGQSKSLIEVSCAKPSLKSAGKRTLKICELCNRTCRGQGELDIHMRRHKDERPYSCDHCDKAFVTMTCLRRHARRHTGEKPFTCKHCGRGFVDSHAKKNHELIHTDEWPYICQKCGKRFRTCYRLTQHFQVHIGVKKFTVACVQSNGMELNCDKTLESHKIKQDANDEVSIRPSSQSEISIQESSEKPRLNPTYKSPLKICEICKQSFSSQRKLDIHMRSHTEERPFRCDHCEKAFVAEAELECHVRVHTGQRSYKCQYCDRRFSGYSVKKNHESTHTGERPYVCSTCGKSFATYSGGLRRHLLIHKRQEMYMQKMRQRSHEQDGNHVVRHMAQEELDKSSEHKQKKILEKEIFQIEECANSNEISIKHEVRLIEEEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -