Mmyr026739.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microdon myrmicae
Gene Symbol
-
Assembly
GCA_963931805.1
Location
OZ007502.1:6970377-6973136[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 9.9e-06 0.0011 20.1 2.3 3 23 199 219 198 219 0.98
2 15 4.5e-06 0.00051 21.2 0.4 1 21 225 245 225 246 0.95
3 15 0.01 1.2 10.6 3.3 1 23 253 275 253 275 0.99
4 15 4.5e-07 5.1e-05 24.3 0.7 1 23 281 303 281 303 0.98
5 15 0.00075 0.086 14.2 0.2 1 23 309 331 309 331 0.92
6 15 2e-05 0.0023 19.1 1.2 3 23 460 480 459 480 0.98
7 15 1.3e-06 0.00015 22.9 0.4 1 21 486 506 486 507 0.96
8 15 0.0006 0.068 14.5 1.3 1 23 514 536 514 536 0.98
9 15 1.1e-07 1.3e-05 26.2 0.4 1 23 542 564 542 564 0.99
10 15 4.1e-06 0.00047 21.3 0.1 1 23 570 592 570 592 0.96
11 15 2.8e-06 0.00032 21.8 0.6 3 23 721 741 720 741 0.98
12 15 6.7e-07 7.7e-05 23.8 0.5 1 21 747 767 747 768 0.96
13 15 0.0069 0.78 11.1 5.0 1 23 775 797 775 797 0.98
14 15 1.1e-07 1.3e-05 26.2 0.4 1 23 803 825 803 825 0.99
15 15 7.7e-06 0.00089 20.4 0.5 1 23 831 853 831 853 0.97

Sequence Information

Coding Sequence
ATGTCACATTTGATTGTCTGGGAAAGTGTGTGTCTTGTTTGTTTACAAAAATGTGAGAATCGTTCTATATTCGAACAAGATAACGATTCAAAtctgattgctgataaaataatgaaatgtgcggatattttgattaaaaaaagTACCAATCATCCAGAAAACATCTGTTTGCAATGCCTTGAAGCTCTAAACATCGCCTATAAATTCCGTCAAAACTGCGAGCAGTCGgactctataatcaaagcacttctaaATGCGAATCACAAGAAATTTGAAATAAAGAACTTATGGAAAACCACCTCCATCACAATGAACCCAGACGCCTGCATTAAGGATGAAATTGTGGACAAGCCTGAGGTCGACGATGTTTGCGATGAGGAGAGTACACCTTGTCTTGGCATGGAAGATGATCCCGATACTGAATCTACGTTTGTTGAAAATCATACGGATGCCAGTGTCCACAGTTCTGATGAGAAACTAAATAATGTGAAGACAACTGAAAGTAATGAAACCAAAAAAGAGACGAATAATGAAATTTCAAGGCAGCCAAAGAAATCAAGTCCCAACTCAACTTATAAAGGGCCCCCGGAAAATTGTAAAATATGCGATCTCAGTTTTAAGCGCCAACATGCACTCGACATTCATATGAGACGACATAACAATGAACGACCTTTCAACTGTGATCATTGCGACAAATCTTTTGTGTCCGTCTCGGAGTTACAGCGTCACGTGAGAGGGTATACTGGCCAGAGATCGTATAAATGCCAGTATTGTGATCGTGGGTTCCTTGACTCCCATGCAAGAAAAAACCATGAGCGCACACATACAGACGAAAGACCATATGTTTGCCCAACTTGTGGTAAGAGCTTTACGTATGCTTGCGCCTTGACAGAGCATCTTCGAATTCACACCGGCTTAAAGAAATTCATGTGCAAAGAATGTGGTAAAGGATTCGGCAGAAAGGTGCCCTTTGAGAAACATGCAGCCGATCACTTGACCCAAGATGAAATGAATAAATCATCAGAACTAGAACAAAACAAACGAGAGAAAAAAGAAATCTTCCGGGTAGAGGAATTCGCAAATTCGAACGAAATTAACAGCAAACATGAAAATGTTGACAAAGCCGTAATAGACGATATTCCTGACGACACCAACTCGCCTTGTCCTGACTTAAAAGATGTACGCGTTACTGAAAGCAAACTTGTTGTTGAAGATCGTGCAGATGCCTGTGAACATGGCAGCGATATAGAACTACATGAAAAAAACAAACCCAAACAGGGAGCGAATAATGATATTTCAAGGCGACCAATAGGGCGCCAAAAGAAACTAACAAAAGTATCAAGCCCCAAGATAGCTTATAAAGGGTCCCTGAAGAATTGTGAGATGTGTAATCTCAGTTTTAAGCGCCAAAGTGCATTCGACGTTCACATGAGACGTcataacaatgagcgaccttttaCCTGTGATCATTGTGACAAATCCTTTGTGACCGTCTCGGAGTTACAGCGTCATGTGAGAGGTTACACTGGGCAGAGACCTTACAAATGCCAGTACTGTGATCGTGGGTTTGTGGACTCCCATGCGAGAGCAAACCATGAGCGCCTACACACGGGTGAAAGACCATATGTATGCCCGACTTGTGGCAAGAGCTTTACATATTCTACGTCCCTATCAGACCATATTCGAATTCATACTGGCCTCAAGAAATTCGTATGTACAATATGCGGCAAAGGATTTGCGAGGAACGTGCTGCTTAAGAGGCACGCAGTTCGGCACCAGGCTCGAGAAGAATTGAATAAATCATCgaagaacaaacaaaaaaaactgcAAAAAATAGAGAAAAGCCATAAATCCagcatcaaacatgaaattatattCAGCGCCGTAGTCGACGATACTCGTGACGTTCACAACGCGTCCCATCCTGACTTAGAAGGTGTTCCCGACACCGAAACCAAATTTGTTGAAAATTGTGCAGATGCCTATGTCCATGGTACTGACGATAAACTAAATAATGTGAAAGTAAATGAAAATAATGAAGACAAACAGGAAGCGAATAATGACGTTTCAAAACGACCCAAAGGGCGGCCAAGGAAATCAGCAAAGGTATCGGGTAAAAAACCAAGCTCTAAGTCAACTTATAAAGGGCCCCTGAAGAATTGTGAGATATGCAATCTTAGTTTTAAGCGTCAAAGTGCACTCGACATCCACATGAGACGAcataacaatgagcgacctttcactTGTGATCATTGCGACAAATCGTTTGTGTCCCTCTCGGAATTACAGCGTCATGTGAGAGGGTATACTGGCCAGAGGCCTTACAAATGTCAGCATTGTGACCGTGGCTTCCAGGACTCCCATGCGAGAAAAAATCACGAGCGCTTACATACGGGTGAAAGGCCGTACGTATGTCCGACTTGTGGCAAAAGCTTTACGTATTCCACTTCCCTGTCGGACCATATTCGAATTCATACTGGTCTGAAGAAATTCGTGTGCACAAAATGCGGCAAAGGATTCGCCAGAAAGACGAAACTTGAAGCGCACGCGACTCGTCACCTGACGCGAGATGAATTGGATAAACAAAAGAAACGACAGGAACAAGAAGTCTTCCAAATAGTGCAAACCGATAATccgaacgaaattaacatcaaacatgaaattatagacAACGCTCTAATGGACGACCCGGTTACTGAAGCTAAACTTGTTTTTCAGATTGGGCATAGGCCTGTGCCCAGAGTAACGCTAAGGAACTAA
Protein Sequence
MSHLIVWESVCLVCLQKCENRSIFEQDNDSNLIADKIMKCADILIKKSTNHPENICLQCLEALNIAYKFRQNCEQSDSIIKALLNANHKKFEIKNLWKTTSITMNPDACIKDEIVDKPEVDDVCDEESTPCLGMEDDPDTESTFVENHTDASVHSSDEKLNNVKTTESNETKKETNNEISRQPKKSSPNSTYKGPPENCKICDLSFKRQHALDIHMRRHNNERPFNCDHCDKSFVSVSELQRHVRGYTGQRSYKCQYCDRGFLDSHARKNHERTHTDERPYVCPTCGKSFTYACALTEHLRIHTGLKKFMCKECGKGFGRKVPFEKHAADHLTQDEMNKSSELEQNKREKKEIFRVEEFANSNEINSKHENVDKAVIDDIPDDTNSPCPDLKDVRVTESKLVVEDRADACEHGSDIELHEKNKPKQGANNDISRRPIGRQKKLTKVSSPKIAYKGSLKNCEMCNLSFKRQSAFDVHMRRHNNERPFTCDHCDKSFVTVSELQRHVRGYTGQRPYKCQYCDRGFVDSHARANHERLHTGERPYVCPTCGKSFTYSTSLSDHIRIHTGLKKFVCTICGKGFARNVLLKRHAVRHQAREELNKSSKNKQKKLQKIEKSHKSSIKHEIIFSAVVDDTRDVHNASHPDLEGVPDTETKFVENCADAYVHGTDDKLNNVKVNENNEDKQEANNDVSKRPKGRPRKSAKVSGKKPSSKSTYKGPLKNCEICNLSFKRQSALDIHMRRHNNERPFTCDHCDKSFVSLSELQRHVRGYTGQRPYKCQHCDRGFQDSHARKNHERLHTGERPYVCPTCGKSFTYSTSLSDHIRIHTGLKKFVCTKCGKGFARKTKLEAHATRHLTRDELDKQKKRQEQEVFQIVQTDNPNEINIKHEIIDNALMDDPVTEAKLVFQIGHRPVPRVTLRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-