Mhyp000573.1
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- -
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010000001.1:5214502-5218620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.1 7.5 6.9 0.1 3 23 202 223 201 223 0.93 2 11 4.2e-05 0.003 17.6 0.8 1 23 529 552 529 552 0.94 3 11 5.3e-05 0.0039 17.3 0.2 1 23 579 602 579 602 0.98 4 11 0.0069 0.5 10.6 0.3 3 23 648 669 646 669 0.94 5 11 0.15 11 6.4 1.8 2 20 733 751 732 755 0.89 6 11 0.25 18 5.7 2.2 2 23 779 801 778 801 0.89 7 11 0.7 51 4.3 0.3 1 20 808 827 808 829 0.88 8 11 0.31 22 5.4 0.5 2 20 835 853 834 857 0.87 9 11 0.095 6.9 7.0 0.3 1 20 864 883 864 885 0.94 10 11 0.29 21 5.5 0.7 3 23 987 1007 980 1007 0.84 11 11 0.0029 0.21 11.8 0.2 3 23 1072 1093 1071 1093 0.91
Sequence Information
- Coding Sequence
- ATGTCGCTTCAATCAACTAATGGTAATCAAAATAATGTAATGATTCCAGCCAATGACGATAACTTTAATGAAGAACCTACTTCATCGTCGACATCAAATAGTGAACCGACTAAATCACCtaagataataatatcaaaaaattcgcCACTGAAATCAgagaATGAAATGGAAACTGAATCAATAAATGATGATTCCAAAGCAATTGAAACATCAAAGAGCAATAATACAATGGTAAAAACAAATGAGCAATTGAATAATCGTAGTATAAATTGTTCAAAAGTGCGGATAAAATCATTACCAAAACGTCACTGGGGAATTCCAAGTGGTGGGAAATTGTTGAatcaaccaaaaaataaaaatggtttaAAACTTGCATGCCAGAAAAATGTTAAAACACAACCTAAACGGATTGCAACATTAGTAACGAAAAATTCATCGATTGAAATAAAGGGTATTGGAAGTAATACAGAAAAAGCTGAACATAAATTACCAGAATTATGCGCATCGAGTACTGATTGCATAGCATGTAAAGAAAAGTTCTTAGATAAACTTGAATTGTATAATCATGCAACAATTGCACATCCCGatgtaacaattaaattttgtgaattatgtGACGacacattttttaatgaaattgaattacaaaatCATATATTAGCAGTTCATGGTGAATCATCTAGATTTATTAAAGACCAACATGATTTAGCAcgattaaatatcattaatcaaTTAGAAGGAATTGACGATTGCTCTAATGAAAACATTCCCAATGAAACTGCACAAGAAACAAATCAGTCGACAGTAAAATCTAATCCtcgaatgtatattaatattcatgggGAAAAAGTTTCTTCAGAAACATTGGAGTTCCTAGAAGAAGCATCTACTACGTCAGAAAGTactatagaaaattattcccACGCTGTTCAAGTTCAAATCGCTGATAAGGAtagtgatattttttcttatacggcgttggatgaaaaaaaagaacattcGGATGATTTTGAGAGTTgtcatgaattaaatgaaacatcCATGACAGAATCTGAATGGAGAAACTCGAAAGATAAGAATCCAGATGAAAATACCCAGATTGCAATATTAATTGGCAATGAAATCCACGTGGAAGATCGTTTGACATCATCAATGGGTGTATATCAGACGATTGAAGGTGAAATGGAGAATATGGTTAAAATTCAACAGGGCgaacaaattgaaaatggaAATCATAcatacgataaaaataatattcaattaatctaTGAAATATCACCTGATTCTAATGAATCAGCAAATCAATCAATTGAACTAATGGAAACTAATCAgcatgatgaattattaactcAAGAAAATAGCGAAAATTTATGTGATGATTCAGCAGCATCACCAGCGGTATCATCAGCATGTTCATCAACCTGCAGAACATATTCGATAAAAACTAGCCCTCAAGCAAAAAAATCACCATCAGATATTAATACTAGTACagaagatgaaattaatttttgtataatgtgCCGAGAAATATTCAgtttaattgaacaaaaaagtataaatacaaaatccgGCACTGAGTCAATATTCAAATGTCCATTGTGTTCACGTCAATTTATATCGCGTTCATCATTGGAAAAACACGTagcatattatcatttaaattgtgaatgcacaaaaattgttaaaacacCATCAACGCCAATTACTGTTGATATCGGGGTTGCCCGAGAATCATATGAGTGTTCTTTATGTTCAGCAACATTTAAAGATTATGATGGATTGAATAATCATATTTTAACATTACACGAACCAATGCCACCATTTAAAGATCGTTTGACAATTGGTAAACCCGAATATTTACGTACAGTTCGATGCACTTATATGGAATcaaaattgtcaaataaatctaaaaatatttgtaaaaaagaATCAAAAGTAAATTGTCCCATTtgtgaattatcatttttcacaCATGATGATTATTTATCGCATGTAAAAGAAGCTCACGAGGAAATggtaattattgaaaatacatCATTGGTATCTGCAGAAGATTCTAAAATATGTGATGATTCGATTTCTCATACcccaataaatatacaagatttaattgcaatgaatgaaatgaaaatgaataattcaatacaacATAATAATAGCTcggaaacaatgaaaaatccaACTGAACTGCGAAAGACTTGTAAACGTTGTAATAAAGAATTCGAGACTGTTCGTGAATTGAgtgaacatttttatttttcacacgaTGATGCAACAGAGAGTCAGGCATTGATGACCATGGACTCAACCGTGGATAAACGCACACATGATTGGAGTTGTTTACATTGCTCACAACGATTTAAAGTTCTTCAGAGTTATATACGCCATAGATACTTTGTTCATAATGATGAATCAATGGTGCATGTATGTGAAAATTGTGACAAAATATTGACATCAATAACAATGGTTAATGTTCATGTCTGTTTGAATGTTTTATCATGGAAATGTAGACTATGTAATGAAACATTTCAAAATGGTGTGGAATTACGTCTTCACAATACGGAAAAACATTTGGAAACATCGGGACCGCATACTTGTTCAACTTGTGGAAATCGATTTTTAACAGCAACAATGTTAATGCGTCATCGAGAAGCAAAGAAATGTTATCCATGTGTTCGACCACcagagaaattaaatatcgttCAAAGTCGTATTAATGAACgtggtatgaaaaaaaatacaactgctatgaaaaaagaaaagacacCACGAAAAAAACCTCAAAAAGATTATCCACGCATACAAGATTTACCAAATATGCGGGTGATACAAGAGGATGTATTCGTTCGcgatgcaaaaaataaaagtcttggtcagaataaaaataaaaaatcatcatcgCCAGCATCATCAAAATCACaacaaaatgatgaaatttatcaatgcaCTGTAGAAATTTGTCAATTGTGTTACAAAATGTTTGTCACGGGTAATCTCGTTCGACACATAACTGACAATCATCTTAAGCACGATAGTAAAGATCAAGCATATTATAATGCATTGAGAGTTAAACAGCACAatacatttcaaataaatgagCATGATATTGAAAGAGACACAGAGGAATTGATATCAACAATtggaataaatcaattattgggTTTATGTGAATATCAACGATTCACAGAATTTTCAGATGACGATGATAGATTTTGTCCTGATTGTCCATTAGCATTTGATGATTCTGAAAAATATCGACGTCATTATGTTCAAACCCATGATAAATTATGTGCATTGTGTAATATGGAATTCGAAACTGGACAAGAGGCGGCACGACACAAAACTCGAATTCATGGTTCAATGGCGTGTTATATTTGGTTTGCACACAAACTTGTTGCCGCGATAAGCGATACAAAAACATTTAGTGAAATGgcggaaaaaataataaatgattcaaTACCAATTGAAAAAGTTGAATGTAAAATGGagattgatgatgatgagcaatatcaacattatattgtaaatgatgaagaaattaataactTTAGTAATGATAAATCTGATGAATGTTCGAACAACAATGAATGGGAAGATGATTATGCCTCGAGAGAAAATAGTTTGTCTGAAGATGCAATTGCATTAGCAAATTTCAATGTCGATACGAATCAAAGTATCGAAACTCATGTTGatcttgatgataataatgataatgatgatgacgatgaagatGAGTATAAACTCTTTATATTGGTAACTGAAGATgatttggaaaaatataaaaataatatttcaacgctcgcaaaacaaatatattcaacatgtaatatattttcaattgatcaaATTGAAGCAATGCTGGAGccctatataaaaaaatag
- Protein Sequence
- MSLQSTNGNQNNVMIPANDDNFNEEPTSSSTSNSEPTKSPKIIISKNSPLKSENEMETESINDDSKAIETSKSNNTMVKTNEQLNNRSINCSKVRIKSLPKRHWGIPSGGKLLNQPKNKNGLKLACQKNVKTQPKRIATLVTKNSSIEIKGIGSNTEKAEHKLPELCASSTDCIACKEKFLDKLELYNHATIAHPDVTIKFCELCDDTFFNEIELQNHILAVHGESSRFIKDQHDLARLNIINQLEGIDDCSNENIPNETAQETNQSTVKSNPRMYINIHGEKVSSETLEFLEEASTTSESTIENYSHAVQVQIADKDSDIFSYTALDEKKEHSDDFESCHELNETSMTESEWRNSKDKNPDENTQIAILIGNEIHVEDRLTSSMGVYQTIEGEMENMVKIQQGEQIENGNHTYDKNNIQLIYEISPDSNESANQSIELMETNQHDELLTQENSENLCDDSAASPAVSSACSSTCRTYSIKTSPQAKKSPSDINTSTEDEINFCIMCREIFSLIEQKSINTKSGTESIFKCPLCSRQFISRSSLEKHVAYYHLNCECTKIVKTPSTPITVDIGVARESYECSLCSATFKDYDGLNNHILTLHEPMPPFKDRLTIGKPEYLRTVRCTYMESKLSNKSKNICKKESKVNCPICELSFFTHDDYLSHVKEAHEEMVIIENTSLVSAEDSKICDDSISHTPINIQDLIAMNEMKMNNSIQHNNSSETMKNPTELRKTCKRCNKEFETVRELSEHFYFSHDDATESQALMTMDSTVDKRTHDWSCLHCSQRFKVLQSYIRHRYFVHNDESMVHVCENCDKILTSITMVNVHVCLNVLSWKCRLCNETFQNGVELRLHNTEKHLETSGPHTCSTCGNRFLTATMLMRHREAKKCYPCVRPPEKLNIVQSRINERGMKKNTTAMKKEKTPRKKPQKDYPRIQDLPNMRVIQEDVFVRDAKNKSLGQNKNKKSSSPASSKSQQNDEIYQCTVEICQLCYKMFVTGNLVRHITDNHLKHDSKDQAYYNALRVKQHNTFQINEHDIERDTEELISTIGINQLLGLCEYQRFTEFSDDDDRFCPDCPLAFDDSEKYRRHYVQTHDKLCALCNMEFETGQEAARHKTRIHGSMACYIWFAHKLVAAISDTKTFSEMAEKIINDSIPIEKVECKMEIDDDEQYQHYIVNDEEINNFSNDKSDECSNNNEWEDDYASRENSLSEDAIALANFNVDTNQSIETHVDLDDNNDNDDDDEDEYKLFILVTEDDLEKYKNNISTLAKQIYSTCNIFSIDQIEAMLEPYIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000862;
- 90% Identity
- -
- 80% Identity
- -