Mhyp009777.1
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- -
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010001833.1:4013350-4018889[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00088 0.064 13.4 2.4 1 21 20 40 20 41 0.96 2 13 0.094 6.8 7.0 0.0 1 21 86 106 86 107 0.93 3 13 0.0045 0.33 11.2 1.2 3 22 115 134 113 134 0.93 4 13 1.6e-05 0.0012 18.9 0.3 2 21 191 210 190 211 0.94 5 13 0.00027 0.019 15.1 4.9 1 21 229 249 229 250 0.95 6 13 0.00094 0.068 13.3 3.2 1 21 256 276 256 277 0.95 7 13 0.0088 0.63 10.3 0.6 3 21 334 352 332 353 0.94 8 13 3.7 2.7e+02 2.0 0.7 1 8 361 368 361 369 0.88 9 13 0.12 8.9 6.7 1.2 1 14 394 407 394 410 0.88 10 13 0.00027 0.02 15.0 2.5 1 21 434 454 434 455 0.95 11 13 0.0003 0.021 14.9 2.1 1 23 463 486 463 486 0.97 12 13 0.024 1.8 8.9 1.3 1 21 509 529 509 530 0.95 13 13 0.00047 0.034 14.3 0.2 1 23 538 561 538 561 0.98
Sequence Information
- Coding Sequence
- ATGACTTGCTACTGGAATCCCAAGTCtcgaataaatcaatcaaagaaaaataaaccatTCGTTTGCTCCAACTGCGCTGCATGTTATTCAAAAAGTTCGTCATTAAACTCTCATATGCGTCATGATTGTGAATTAGAAGAGAACGAAGATCGTCGTGGTCATCgcagttatataaaaaatttggacTTTGCTGATGTATCTGAATTATTGGATCCGAAAAAGTTATTGACACTACCTGTAGCAACTGTAAAACCATTTACTTGTAGTAGTTGCGGTGTGGGTTTTATGCGAGCGCAAATTCTTAAAGTCCACATGGCTCGCGAGTGTGATGACATACACTTATGCAATTTATGTGgcaatatttttccaaattatCGTAGTCTGAAGAATCACAAACGTCGTGGTGATGCATCAGATTCATTTTCCTTTGAAAATTTCGTACTGGAACTGCACGAGAATTATTGTCGATTCTGTTATCGTTTAATTGATACCGCAGCAATAGAAgaacatgaaattaattgccaTGAAAATCCAgaatcatcaaatttttcagTAAAAGAATCTCAAAGTCAATGTGAATATTGCAATCGTACATTTGCCACTAATGGTACATTGAGCCGTCATTTAATGTATTTCTGCACAATGAATAGTACATCGACGTCATTTCAATCGGACGTACgtcaatttatttgtcaacGCTGCGGTACATGCTTCAAACGAAAAAGTCATCTTGATGAACATGTACGTCATGATTGTGGCCAAACACATCAATGTCAATTTTGCAAGAGGATGTTTGCGTATTCACGAAGTCTTAAGCAACATTTGAAGCAAAgtATTTCGCTTTCATTCGACAACGAATGGATGCCACAGCATATCGATGTTAACAATCCATTGATGGTGAATGCTGgggtttttataaatgaaccAACATCTATTGtttctcaaaataatttttccacatCGAGAAGTCAAACAAATGCATCATTACGACGTTGGTTCTGTCCTAAATGTTTTAATAGTTACAAAAATGCTGCTGACATGAAGAAACATTATCGTTTTTGGTGTGGTCAATTGCCACGATTCACGTGTCCATATTGTGAACGTCAACAGTATTACAATCAAACATTGGATACATATTTACCATGGCCACCACAAACATCTCAATCTACTGTTGAAGAATTTCGCTGTCATAAGTGCAATGGAACATTCAGACGATACAAAGCAGTAAGATTTGGTCGGTGGGTGCGTAGACGTCAACAACGGGCTAATCAACTTCTGACGGATCCAAGTGCACCGAAATTTCCATGCACCAATTGTCAAAGTGTCTTCAGCAGGAAACACAATCTTCAATATCACCTAAAATTTGAGTGTGGACAAATGCCACGATTTAATTGTCCCTATTGTGCTTATCGTACGCGTCATTCGTCAAATGTACGTGCACACGTTCGTAAAATGCATCCTGTATCTGtgaaaaaatcacaatatttAATGGCAACCGATCCATTGGTCGCTTCAACAATGAAATATCCATGTCCGAATTGTTCATCGGTTTACAGTCGTGATTGCACTCTAAAAAGTCATCTAAAATATGAGTGCGGTCTGGAACCACGATTCAAGTGTCCATATTGTAATTGGCTGTCAAAACGAGCAGGAAATATAATAAGTCATGTACGAAGAATACATGCAGATCTCAAGCCATATGTTGTTGATATATTAGGAGAGTACAAACCACGAAAAAGGTGGGATCAGTAA
- Protein Sequence
- MTCYWNPKSRINQSKKNKPFVCSNCAACYSKSSSLNSHMRHDCELEENEDRRGHRSYIKNLDFADVSELLDPKKLLTLPVATVKPFTCSSCGVGFMRAQILKVHMARECDDIHLCNLCGNIFPNYRSLKNHKRRGDASDSFSFENFVLELHENYCRFCYRLIDTAAIEEHEINCHENPESSNFSVKESQSQCEYCNRTFATNGTLSRHLMYFCTMNSTSTSFQSDVRQFICQRCGTCFKRKSHLDEHVRHDCGQTHQCQFCKRMFAYSRSLKQHLKQSISLSFDNEWMPQHIDVNNPLMVNAGVFINEPTSIVSQNNFSTSRSQTNASLRRWFCPKCFNSYKNAADMKKHYRFWCGQLPRFTCPYCERQQYYNQTLDTYLPWPPQTSQSTVEEFRCHKCNGTFRRYKAVRFGRWVRRRQQRANQLLTDPSAPKFPCTNCQSVFSRKHNLQYHLKFECGQMPRFNCPYCAYRTRHSSNVRAHVRKMHPVSVKKSQYLMATDPLVASTMKYPCPNCSSVYSRDCTLKSHLKYECGLEPRFKCPYCNWLSKRAGNIISHVRRIHADLKPYVVDILGEYKPRKRWDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -