Mhyp000326.1
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- -
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010000001.1:3227061-3230109[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.082 5.9 7.2 0.6 3 21 257 275 257 276 0.96 2 13 0.00076 0.055 13.6 0.2 1 23 282 305 282 305 0.94 3 13 0.0001 0.0073 16.4 1.2 2 23 318 340 317 340 0.96 4 13 0.005 0.36 11.1 0.7 3 23 353 373 353 373 0.98 5 13 7.8e-08 5.6e-06 26.2 1.5 2 23 413 434 412 434 0.97 6 13 0.01 0.73 10.1 0.5 1 23 439 462 439 462 0.87 7 13 0.56 40 4.6 0.6 2 23 537 558 537 558 0.96 8 13 8.7e-07 6.3e-05 22.9 2.0 1 23 567 589 567 589 0.98 9 13 1.6e-05 0.0012 18.9 0.1 1 23 597 619 597 619 0.98 10 13 0.011 0.78 10.0 3.3 1 22 625 646 625 646 0.95 11 13 0.0034 0.24 11.6 1.3 1 23 676 698 676 698 0.98 12 13 0.39 28 5.1 0.0 1 23 761 784 761 784 0.95 13 13 5.5e-07 4e-05 23.5 5.9 1 23 789 812 789 812 0.98
Sequence Information
- Coding Sequence
- atggcTGGACAAACAAAATGGGAGAATTCGTGTAGATTATGTTCTGAGGCAAAAATTGAGATGTTATCGATATTTGGTGAGGAAGGTTTACGACGACAAATACCACAAAAATTACGAGTATGTTTACCTATTATGGTATATAAAACTGATCCACTGCCAAAACAAATTTGTCAATTTTGTGCTGCAAGATTGGACGATGCATTTGAATTTAGAGATTATTGTCTCAATATTTACAAGAGTAtgcatttaaaatttcttactagtaaaaattcaaaatcagttaaaatatttttggacgCAATGTTTAATTCTCCTGATCCATGTcaggtggaattgagtaaaataaaacagcGTGCTCCACCGCCGTTAGTTCCATTGCCATTATCATTGTCCATGAGTAAATCAACCTCATCATTGGTGGAAATTCCAAAAGTTGAACGAATAAGTATTAATACTGAGCCATTGCCCGAATTACCAATAGAAGTCCAAATAAAAGAAGAACCATCTGAAATTATAACCAAAGgagatttaatttcatatgaaGATGAAGATAGTAACCAAAGTTTTGctgatgaaaatttacaaGATAATAATGAGTCAAGTGCCAGGGAATTAGTTgattatacaaatgaaaatattaatataaaatctgaATCAAcgtgtaatgaaaaaaaaaccagtaTTCTAGAGCAAGTATTGAAAGGAAATTTAACGATTAATGATTGCCAAGAATCAATTCCAACGACAGAATTGAGCTCAGAATGGTGGTGCTCactatgtaataattattatcaaactaAAGAGAGTCTTATTAAGCATATGCAATTTTATTGTCCATGTAAATATGCTTGTGGTAAATGTTCTCTTGTATTTAAAACAGTCGAAGAATTGACAAAACATGAGGCTAAAGATCACTTAAAAATAACTCTTAATTTTGATGAATCAATTAAAGAATGCCATCAATGCGATCGTGAGTTTGTCAGTTGGGAAATGTTAAGACTTCATCGATTGCGAGACCATTATGTTGGATCTATTGAATTTGCAGCAAATATCTGGTGCCCCCTTTGTAATAGattttttcaaaatgaagAATTGTATCGTGATCATCAACAGCTTCATGAATCTGATTCGCCAATAGATGAAGCAGGCTATAAGATGAATCATGATTCAACAAATATCCAAGAACAATTGAATGAGATTAAACAAGAACATCTTATTGAAAGTATCAAAAATCTCACATGTCCTACATGTGGCAagGTTTGTACTCAACAAAGTGCATTGTCGAATCATATGCGAACTCATGAACCCAAGAAACATAAATGCGATATTTGCGGTCGATCATTTGGACTATTTATACGATTGGCTGCGCATAAATTAAGTGAGCATAATCTACAACCAACTGTGGCACCGACAATGACGAGTGTCGAGCAAGAAGAGGCTTTGAATGATGAAAGAGAAGCACGCGAAgctcatgaaaataaatttaatataaatgatcgtCGCCGAAAATTTTCCAAAACGCTGGACGACGATGAATCAATTGTCAGCGAGCAACAACCGGCTAAACGCAACgcattaatgaataataattcacctaAAAATGTTGCGCGTTGTGGCATTTGCCAGGAATGGTTCAATGATCACACAACAATGCTCAATCATCTGGAAATACATTCTGAAAATGTTTTTCCAAAGAATTTTAGTTGCACTACATgtgaaaaaagttttaaagACAACTGGCAATTACAGAGGCATGAAagATCACATAAGCGTGTGAAAGCAACTATTTACGAGTGTTCTGTTTGCAATAAACCATTTCCCGATAAAGCACAATTAGATactcatgaaaaaattcacatcgTAGATAAAACTTATCACTGTccaaaatgtaataaaatattttttaaagaattgTCACTGATAACTCATCAATGCACTGGTATATCAATATCTATCAAACGAAATTCGAATAAGGTAAAAACAAATCAGAAAAAAGCCAAGTCACCagatgttgataataaaaaattcaagtgtTCGAAATGTCCAGAAATGTTTGATACTACGCAGTTGAGAAATTTACATACACGAATTCACATAGAGCCAAAGCTACCATCGCCATCGGGCATGGATTTGAATGATGCGAAAAATTCAATGCCAAATTTAAGCCCGGTAAGATCGCCAGATGCATCGATAACCCTTTTGGAACCAAAAGTAGAAATCACAGTAGACCAGAATCCTCTTGTGCCACAAAAGAGAACTCTTATCAGAACTACTGGcggatatcGTTGTGGAGTTTGTCAATCGCCATTTGTTCTTCGTGAATTGGCTGTGGCACATTTAAGAGCCGCTCATCCTGCGATGCCTTATCAATGTCCTTACTGTAAAAAACGTTTTACAACTCAATATACATTTACCCATCATATAAAAACTGATCATCCTGATGAATCGgaaaaatag
- Protein Sequence
- MAGQTKWENSCRLCSEAKIEMLSIFGEEGLRRQIPQKLRVCLPIMVYKTDPLPKQICQFCAARLDDAFEFRDYCLNIYKSMHLKFLTSKNSKSVKIFLDAMFNSPDPCQVELSKIKQRAPPPLVPLPLSLSMSKSTSSLVEIPKVERISINTEPLPELPIEVQIKEEPSEIITKGDLISYEDEDSNQSFADENLQDNNESSARELVDYTNENINIKSESTCNEKKTSILEQVLKGNLTINDCQESIPTTELSSEWWCSLCNNYYQTKESLIKHMQFYCPCKYACGKCSLVFKTVEELTKHEAKDHLKITLNFDESIKECHQCDREFVSWEMLRLHRLRDHYVGSIEFAANIWCPLCNRFFQNEELYRDHQQLHESDSPIDEAGYKMNHDSTNIQEQLNEIKQEHLIESIKNLTCPTCGKVCTQQSALSNHMRTHEPKKHKCDICGRSFGLFIRLAAHKLSEHNLQPTVAPTMTSVEQEEALNDEREAREAHENKFNINDRRRKFSKTLDDDESIVSEQQPAKRNALMNNNSPKNVARCGICQEWFNDHTTMLNHLEIHSENVFPKNFSCTTCEKSFKDNWQLQRHERSHKRVKATIYECSVCNKPFPDKAQLDTHEKIHIVDKTYHCPKCNKIFFKELSLITHQCTGISISIKRNSNKVKTNQKKAKSPDVDNKKFKCSKCPEMFDTTQLRNLHTRIHIEPKLPSPSGMDLNDAKNSMPNLSPVRSPDASITLLEPKVEITVDQNPLVPQKRTLIRTTGGYRCGVCQSPFVLRELAVAHLRAAHPAMPYQCPYCKKRFTTQYTFTHHIKTDHPDESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000781;
- 90% Identity
- iTF_01000781;
- 80% Identity
- -