Mhyp002095.1
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- -
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010000002.1:4298187-4300675[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5e-05 0.0032 17.5 2.7 1 23 321 343 321 343 0.98 2 12 0.00025 0.018 15.2 2.4 1 23 347 369 347 369 0.97 3 12 0.00044 0.032 14.4 4.1 1 23 374 396 374 396 0.95 4 12 0.00022 0.016 15.3 4.3 1 23 455 477 455 477 0.98 5 12 0.00071 0.052 13.7 1.4 1 23 482 504 482 504 0.97 6 12 0.00026 0.019 15.1 2.3 1 23 555 577 555 577 0.98 7 12 0.0005 0.036 14.2 1.6 2 23 585 606 585 606 0.98 8 12 8.9e-07 6.4e-05 22.9 2.1 1 23 617 639 617 639 0.96 9 12 0.0002 0.015 15.4 1.6 1 23 645 667 645 667 0.97 10 12 0.00014 0.01 15.9 0.7 1 23 673 695 673 695 0.98 11 12 4.3e-06 0.00031 20.7 2.0 1 23 701 723 701 723 0.96 12 12 7.6e-05 0.0055 16.8 0.3 1 22 729 750 729 750 0.96
Sequence Information
- Coding Sequence
- ATGAATGTCAATTACTTTGAATTGCCACCAAACATGGATCGTGTTTGTAGAATATGTTTATCTGAGGGAACAAATTTATCGCCAATATTTTGCACTGAAGAAGATGTAACTGATTTTTCTGGTCTTgcacaaaaaatacaaatttgtggAGCTATTGAAATGCATGAAAGAGATGGTTTGCCTTCATTAATCTGTgatgtttgtatttataaagcCAGTGTGGCACATGAATTTCGACAACAATGCCAGAATTCTGATGCACGATTgcgattatattataataaacctGCAAAATCTAGCGttactaaTTCAACTACGCAAACTGATTCAAATACACGAATATGTGTAGCGAAAAAAATCGATAACTcgcaaacaaattattttatcaaggaTGAAATGCAGGGATTGAGTCAGGAACTGAcggataaattatttctctgtaATATTGGCTTTGACGGAGACAAAGAATTAGGAAAAAATGCTGTGATAATGGAGAATCATGAGCATTCAGAACAAAATTTAACAACTGAGGTTTCACAAGTGACAATAGTCGCAACTATGGATACTAATGAACCTTTAGAGCATCAAGTGATAAGTACAATATCTGAGATAAAAACGACTAATTCAACGGAGGAATATATTACTGCGCATATTTTAACGTCAGTAGCTGATCGTGATGAGGATGATGACAATGATATGATTGATAATGAAGAAGTAGCACTGGTGAATAATGGTGATGaggatgatgaagaaattggGACAGAAACAATTGAACAGTTAGAGACACATCATGAATCAGATCAATCTGAGggtcataataaaaaatgggtgaaagaaatgataaatgaaaatgatattttgcCAAAACGCTTGACGAGAAATGCAAAATCAATTGCTGGAAAATCGtcatatgaaattgaaatggaTGATGATTCACAAGATGGTGATTTGgaactaaaatttaaatgtaaaatatgttCACGACGTTATACAACACAAAAaggattaaaaaatcattctcAAGTACACGATAAACAACACAAGTGCCCAATATGTTTAAaatctttttataaattggaaaatatggAGAAACATTCGAAAATCCATGAATCTAAACCACACGCATGTCAAATATGTCATACGTCATTTGCTAAATCACAAAGTTTAACTCGACATTCAAAAATACACACGGATAAATTGACaaatgatgaaacaaaatCGTTGTCAAATGAAGAGATGATaaattctgaaataaaaaaagataaaaatgaaaatgaaaacacaaatgatgacaatgatgatgatgaacaaGCTTGTGCACAAACAAATGAAACTGATGAATTTGACAGTGCGCCAGATTTATACAAATGCGATGTGTGTAATCAATTTTGTTCaacgttaaaaaatttaaaacgcCACTCTCTCATGCAcggtgataaaaaatattcatgtacagTGTGTAAAAAATGGTTTTTCCGTCCAGACACGTTAAAGAAACACGCGGAAAAACATGGTCATGGATTATTGGACAATttaatagatgaaaatattttatatgaatcgGATGATGAATCATTTAAGCGTACCAACAGTGTTAGTACCATAACAtctaatgaaaatatcaaaagaGATGAGAGTGACGATGATGGAGCATCAGGCGAATATAAATGTCAACATTGCGACAAAATTATGGCAACAAAAAAAGGTTTAAGACGACATGTATCGATGCACAAACCTAAAGCTGAGCCAGCAACATGTGAAATATGTAAGAAAGTTTGTGCAAGTCAAGCAAGATTGGTTTTACATCAAAAAACACATAATAAACCAAAGGAAAAAGTTCCGCGTGAATATTTGTGTCATATATGCAGTAAAGTTTATCCAAGTAATTCATCATTGACATATCATATGAGAACGCATACTGGCGTAAAGCCACACGTGTGTAAAACATGTAACAGTGGATTTACAACAACTACAAGTTTGGCTAATCATATTAGAATTCATACTGGTGATAAACCATTCGTATGCCATGTTTGTAGTGCTGCATTTGCTGTGAGTTCGGCATTCCGACGTCATTTAACACGCCATACAGGCGAggcaaattatttatgtaaaacgTGTGGTAAAGCATTTAAACGATTGAGTACATTGAAGGAACACACGTATACACATTCAGGCGAAAAGCCATATGTCTGTAAGACATGTGGAGCTGCTTACAGTCACAGTGGCAGTTTATTTGCTCATCAAAAACGTTGCAGAGCGCAGTACGGTGAAATGGTGACTGATGAACATCATAATCATGTAGCACATCATATTCATGTGAATAATGTGCAGTCTGCAGTGCGATCGCTCGCTGTAATCGGTCAGATGTTTTAA
- Protein Sequence
- MNVNYFELPPNMDRVCRICLSEGTNLSPIFCTEEDVTDFSGLAQKIQICGAIEMHERDGLPSLICDVCIYKASVAHEFRQQCQNSDARLRLYYNKPAKSSVTNSTTQTDSNTRICVAKKIDNSQTNYFIKDEMQGLSQELTDKLFLCNIGFDGDKELGKNAVIMENHEHSEQNLTTEVSQVTIVATMDTNEPLEHQVISTISEIKTTNSTEEYITAHILTSVADRDEDDDNDMIDNEEVALVNNGDEDDEEIGTETIEQLETHHESDQSEGHNKKWVKEMINENDILPKRLTRNAKSIAGKSSYEIEMDDDSQDGDLELKFKCKICSRRYTTQKGLKNHSQVHDKQHKCPICLKSFYKLENMEKHSKIHESKPHACQICHTSFAKSQSLTRHSKIHTDKLTNDETKSLSNEEMINSEIKKDKNENENTNDDNDDDEQACAQTNETDEFDSAPDLYKCDVCNQFCSTLKNLKRHSLMHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLIDENILYESDDESFKRTNSVSTITSNENIKRDESDDDGASGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPATCEICKKVCASQARLVLHQKTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVTDEHHNHVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000764;
- 90% Identity
- iTF_01000764;
- 80% Identity
- -