Mhyp006966.2
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- -
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010001831.1:1420274-1422311[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0017 0.12 12.6 0.1 2 23 126 147 125 147 0.96 2 11 0.018 1.3 9.3 4.3 2 23 209 230 208 230 0.92 3 11 0.00022 0.016 15.3 0.9 1 23 365 387 365 387 0.95 4 11 1.6e-06 0.00012 22.0 1.4 1 23 393 415 393 415 0.98 5 11 6.7e-06 0.00048 20.1 2.1 1 23 421 443 421 443 0.97 6 11 2.4e-06 0.00018 21.5 3.9 1 23 460 482 460 482 0.97 7 11 4.9e-06 0.00035 20.5 3.3 1 21 488 508 488 510 0.95 8 11 1.2e-06 8.5e-05 22.5 2.6 1 23 516 538 516 538 0.98 9 11 6.9e-07 5e-05 23.2 1.8 1 23 544 566 544 566 0.97 10 11 0.00015 0.011 15.8 6.9 1 23 572 594 572 594 0.97 11 11 4.2e-06 0.0003 20.8 2.9 1 23 600 622 600 622 0.99
Sequence Information
- Coding Sequence
- ATGTTCATTGTCACAAAACAAATTGACAGTGAGAATATAAGCAAACTTTGTCGAACATGTTTGagagaagatgaagaaaaaatggtttgtttatttgttggcCCTGCAGGATCATCACTTGCTGCAAAATTAAGATCTCTTTCATGTTTAGagGTTTGGCAAGGCGATGGACTACCTGAAAAACTTTGTGATCGTTGTGTAACAAGAGCAGAATCTGCTCTTTTATTTCGTGAACAATGTCGAGCTGCTGATAGAGCACTCAGACAAGCAGCATTGAagGTTTCAGGAATAACAACTTATACAACTGTCTCTGGATGTAAATTATACCAACAAAATCGTGGCTTTACCCCAAtagaaaattcacaaaaaacattaaaatgcGGCGAATGTGGTGCAGTATTTATGGATTATCAAGAATTGTATGCTCACAGTCGTTTACATGCTCCATTTATTCCTGAAACTGCATCATTACCACATATGCACATTGTCGAATcacaaaatacatatttcaatgctgatacatcaataaatgaatcggttattcataataatcatACGACTGCAATGTCGGATTTAAGAACGAATATGAtatctgaaaaaaatgatCGTCCAGCGTGTGCACTTCATTGTTCATTATGTAATCATACATTTCCAAATagaaatcaattgataaatcataatttttctcattgcaATGGCAATGTTGATATATCATGTGACACTGATAGTattgaaattgatgatgattctAATGAAATAGCAGAAAATTTAAGTTTTTCACGAACAATTGATTTAACATATACCAGAGAAAATCCAAATGATTCTATGACAATTCcacgaataaattattcagataATTTAACGTTAAATACATCAACAGTatcggaaataaataatataacaagaTGTGATGTTACttcaaataatgatgatacatCATTGTGtactgtaaataattcaattccaCAATACTCAACATTTTCTAAtgttcaacaaaaaaatgaaactgaGAATATGATAAAcagtaatgataattttaataaaacacaattaaGTGATAGAAATTCTGGTTGTTTGTATGCgcagaaaaaatatgaatgtgataaatgtggaaaatttttcttacaaaaatcaaaattaattgctcatgaattatttcatactgGTGAAAAACCatttaaatgtgaaaattgTGATAAAGCATACACGtcgaaaagtaaattaaacgCTCATTCGAGATTACATACAAGAACTAATGTACATCAATGtgatatttgtaaaaaaacattttcatatcCGTCATATTTATTGGAACACTCAAAAGTACATAGAACAAAGTCCACTGATGATGTCattgatatttcattaaaaacaaaatttgagTGTTCGAcgtgtggaaaaaaatttagattaaaaaaaaatctcagaTCTCATATGAAATTTCATATTGGAAGTGGTTTATTCAATTGtgaaatttgtgataaatCATTTAGCGAAAAATATAATCTTAAAGTTCATTTAAGATGTCATAAAGgcattaaattacataaatgtgaatattgcgataaatcatttaatgaaaaaggaaattatACAGAGCATTTAAGAATTCATACAAAAGTTAAaccatttatttgtaaattatgcGGCAAAGCATTTGCCCAATCTAGTCATTTAAAAAGTCATGAAACTACTCATAATTCTATTCGACCGCATCAATGTCGTTTATGTGGCAAACGTTTCAAGCTTACATCGCATTTAAAACGACACACGAATTTACATACAGcaattaaaacatttaaatgtaTGCAATGTAATCAAATGTTTTCCCAGGCATTTAGTTTAAAGAGACATATAAAAAGACACAGCGAagcgaatatttaa
- Protein Sequence
- MFIVTKQIDSENISKLCRTCLREDEEKMVCLFVGPAGSSLAAKLRSLSCLEVWQGDGLPEKLCDRCVTRAESALLFREQCRAADRALRQAALKVSGITTYTTVSGCKLYQQNRGFTPIENSQKTLKCGECGAVFMDYQELYAHSRLHAPFIPETASLPHMHIVESQNTYFNADTSINESVIHNNHTTAMSDLRTNMISEKNDRPACALHCSLCNHTFPNRNQLINHNFSHCNGNVDISCDTDSIEIDDDSNEIAENLSFSRTIDLTYTRENPNDSMTIPRINYSDNLTLNTSTVSEINNITRCDVTSNNDDTSLCTVNNSIPQYSTFSNVQQKNETENMINSNDNFNKTQLSDRNSGCLYAQKKYECDKCGKFFLQKSKLIAHELFHTGEKPFKCENCDKAYTSKSKLNAHSRLHTRTNVHQCDICKKTFSYPSYLLEHSKVHRTKSTDDVIDISLKTKFECSTCGKKFRLKKNLRSHMKFHIGSGLFNCEICDKSFSEKYNLKVHLRCHKGIKLHKCEYCDKSFNEKGNYTEHLRIHTKVKPFICKLCGKAFAQSSHLKSHETTHNSIRPHQCRLCGKRFKLTSHLKRHTNLHTAIKTFKCMQCNQMFSQAFSLKRHIKRHSEANI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000757; iTF_01001579;
- 90% Identity
- iTF_01000757; iTF_01001579;
- 80% Identity
- -