Mhyp009903.1
Basic Information
- Insect
- Microctonus hyperodae
- Gene Symbol
- -
- Assembly
- GCA_030347285.1
- Location
- JAQQBR010001833.1:5048680-5053577[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.1 6.6e+02 0.8 0.0 10 21 140 151 138 152 0.89 2 13 0.11 8 6.8 1.3 8 23 631 646 631 646 0.98 3 13 0.0062 0.45 10.8 1.4 1 23 652 674 652 674 0.98 4 13 1.2e-06 8.5e-05 22.5 0.3 1 23 693 715 693 715 0.99 5 13 1.4e-05 0.001 19.1 1.5 3 23 723 743 721 743 0.98 6 13 1.3e-05 0.00096 19.2 1.7 1 23 749 771 749 771 0.97 7 13 0.00081 0.058 13.6 0.2 1 23 777 799 777 799 0.99 8 13 0.00015 0.011 15.9 0.2 3 23 807 828 805 828 0.92 9 13 1.8e-05 0.0013 18.7 1.3 1 23 834 856 834 856 0.98 10 13 6.3e-05 0.0045 17.0 2.6 1 23 862 884 862 884 0.97 11 13 2.4e-05 0.0017 18.4 0.2 1 23 890 913 890 913 0.96 12 13 8.7e-06 0.00063 19.7 1.0 1 23 919 941 919 941 0.97 13 13 4.2e-05 0.003 17.6 4.7 1 23 947 969 947 969 0.98
Sequence Information
- Coding Sequence
- ATGCAGCTGCCTTTTTGTTATTGTCTCATCTTCAGTGTTACACTTTTATCATCATGGACaaatcaattaacaataaatgtcGCACCAAAAGAATCGTCGAATCATGTCAGTGATTTAGagcaaaattcatcaataaaatcaagTGACAATCAAGTGCCACGAGTTAAACGCGCTGTAGGATTATTGCTACAGGGACTTGTTCAAGCACTTGGATACAATACAACACCAATTCAAATAGCAACGTTATCCAATGGAAATAATGGCGATATTCCATTAACTAGTCCACTCAACGTTGACTCAAGGATACTTAATCAATCACCGGTTGAGGCCCAGAATTCTAACGGTAATAATTCGCCGAGTATTTCTTCATCAAATTCAAGACCACGTGAAACTTTAAGATTCACTGGTGTTGTAAATTTCGGCAACAATTCAGATCTTTCATCGCATTTAAGACAatacgaaattttatttcatggcaTGCCAACGGCTTCATCATCTGTAATCACGCCTGCGTTATCCACCATAACGCCAAACATTGCAACAAGTGGTCCAAATCCACCGTCAATTCCATTACCAACAGCTTTTCCAAATCTATCTGCTCCAATTCCAATTCCTTTGTTACAAAATTTGCGATATCCAAAGCCTTTATTGTCCATTGTAACTACACCGCCGATGATTATTTTCCCGACTTCGGTTAGTGGACAGAATACAGAAAACACAACAATTCACAATGCTCCAATTAGAAATGAGCACTCAACAAAAGATGATAACGATGAGAATGTCGGTGAGGAGAGCTATGAGGATGAAGATGAAGCTCAGGATAATTATCAGGGTGAGGAGGAATATAACGATGACGAGACTAAAATTGTAGGGCAATCAGATAAAGAAGATTTAGTGAATGACAATAGagaagaagatgatgaagGTAACAGTGAAGTGCAGGTCAGTAATcaatctaataaatataatagtcaTGATACAGAATCGAAAAAATCAGCATTACGTGAAAATGCAGGAAATTATGAGGattctgatgatgatgatgatgatgatgatgatgatgaggaacCGTTTAAATATTCACGATTTACAAtgccaaataataaatatttaatgaattcgGATACGAGTTTTAGTGTGAAGTTACCTCTCGATAATAAGCCATTTCATGGTCAATTAATGAATAGTTACGGCCAAAGTCTTGAGCACGGtggtaaaattgatgaaagtgTCGCTGATTATTTtgcgaaatttaaaaatccacACTCGGGTGTATTCGAATTACCGCGGATGGATATGTTTAAGAATTATCGTCAACAATTAAGTGGTGAAAATTACCGAGagccattaataaataaacaaacgtcGCAAAATTATCCTAATTCACCTTATGTTGGATTTAAATATGAGGAGTACAAATTGAATGACGATCATAAACCGAGTAGATTAAGAGAAGAATCTTTAACAAAGGTACAGGATAATATTCAGTTGCAACAAAGtgatgaacaaaataatagaGACATGTCtcatggaaatattttaaattatccacAATTAAGTGAATTTATGAAGACAAATTCTGGTGGGGAATTGTCTATTAGACCTTttgattttcataaatttaaaccGTATTATAAACCAGTTCAATACATTTACACGCCAGAGTCTTCAGAAACTGCAacgcaaaaaattattccatatcCTGAGCatgcaaataattatacagagACAGATAATGAGGATGTAAAAGAATCGAAAACTcctaaagaatatttaatttctcgaACGAGAAATTTGGATGATCAGATGCCATCATTGCCGATAAATGAACATGATGATTACATTCATACCGATCGAAGAACAACAATTCAACCGGATAAATATgacatTAAAAGTTTCAAGCAATTAGGTCACTTAAGTCAGCATTTATTAACACATACTGATTACCGATCATTTCGGTGTACTGTATGCAGTTCAAAATGTGAATCACTGGACGCCctcaaaatacatttattaactCACAAAGATGTTCTtcaaaatgacaataaattattaaataatgatacgTGTCGATTGTATGAATGTGACGATTGCAAAAAAGTATTCACTGCTAAAAGCGTTTTAGAACGTCACATATTAACGCACACCCATGAACGTCACTTTGGCTGTAAATTATGCGGTAAACGTTTCAAACAAGCCGGTCATGTTAAATCCCACATGTTAATTCACACTGGTGAACGTAAATTTTCATGTACGATAtgctcaaaaaaatttagtctATCCAATGCATTAAAGAAACACATGTACGTACATAATGGTGAAAAGCCATATCAATGTGATGTTTGTGGTGCTCGTTTTCTTGAAAAACGAAATCTCAATGGTCACCTCATGACTCATACAAATGAACGACCATTTGGCTGTAAAATATGTGGCAAAAGATATACCTTGGCAGATACATTAAAACGACATGTGAGTGCTGCACATGAACATGGTAGAACTTATCAATGTGAAATTTGCGCTAAAATGTTTAAGCAATTGGCACATCTTTCTGTTCATAAAAAAGTTCACACTGACGAAAGACCattctcatgttatttatgTGGAAAAActtttaaacacaaaaatgttttaaaatcACATTTAGCTATTCATGCAAATATCAGGCCTTTCGAGTGCGATGTTTGTAAAGGAACATTTGTCAGGAAAACAAATTTACAAACGCACATCGCATCTGCCCATATGAATGAACGTCCGTATATTTGTACAATTTGCAACAAACGGTTTAAACAAATTAGTCATTTAAATGGTCATATTGTTGTTCACAGTAATTCATTGCCATTTCAATGTGAATTTTGCGAAAGACGATGCAATAGACTTGATAATTTGAAGAAACATATGAAATTACATGCAAAgagcaaaaattaa
- Protein Sequence
- MQLPFCYCLIFSVTLLSSWTNQLTINVAPKESSNHVSDLEQNSSIKSSDNQVPRVKRAVGLLLQGLVQALGYNTTPIQIATLSNGNNGDIPLTSPLNVDSRILNQSPVEAQNSNGNNSPSISSSNSRPRETLRFTGVVNFGNNSDLSSHLRQYEILFHGMPTASSSVITPALSTITPNIATSGPNPPSIPLPTAFPNLSAPIPIPLLQNLRYPKPLLSIVTTPPMIIFPTSVSGQNTENTTIHNAPIRNEHSTKDDNDENVGEESYEDEDEAQDNYQGEEEYNDDETKIVGQSDKEDLVNDNREEDDEGNSEVQVSNQSNKYNSHDTESKKSALRENAGNYEDSDDDDDDDDDDEEPFKYSRFTMPNNKYLMNSDTSFSVKLPLDNKPFHGQLMNSYGQSLEHGGKIDESVADYFAKFKNPHSGVFELPRMDMFKNYRQQLSGENYREPLINKQTSQNYPNSPYVGFKYEEYKLNDDHKPSRLREESLTKVQDNIQLQQSDEQNNRDMSHGNILNYPQLSEFMKTNSGGELSIRPFDFHKFKPYYKPVQYIYTPESSETATQKIIPYPEHANNYTETDNEDVKESKTPKEYLISRTRNLDDQMPSLPINEHDDYIHTDRRTTIQPDKYDIKSFKQLGHLSQHLLTHTDYRSFRCTVCSSKCESLDALKIHLLTHKDVLQNDNKLLNNDTCRLYECDDCKKVFTAKSVLERHILTHTHERHFGCKLCGKRFKQAGHVKSHMLIHTGERKFSCTICSKKFSLSNALKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFGCKICGKRYTLADTLKRHVSAAHEHGRTYQCEICAKMFKQLAHLSVHKKVHTDERPFSCYLCGKTFKHKNVLKSHLAIHANIRPFECDVCKGTFVRKTNLQTHIASAHMNERPYICTICNKRFKQISHLNGHIVVHSNSLPFQCEFCERRCNRLDNLKKHMKLHAKSKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -