Mbra001117.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- -
- Assembly
- GCA_940306215.1
- Location
- OW675801.1:9637823-9640328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00033 0.034 14.8 0.3 2 23 228 249 227 249 0.95 2 9 0.27 28 5.6 3.5 2 21 353 372 352 373 0.94 3 9 0.023 2.4 8.9 0.8 3 23 391 411 389 411 0.95 4 9 5.9 6e+02 1.4 0.5 1 10 422 431 422 433 0.90 5 9 0.0026 0.27 11.9 0.2 1 20 485 504 485 506 0.95 6 9 0.033 3.4 8.5 0.4 2 23 560 581 559 581 0.94 7 9 0.00019 0.019 15.5 0.3 1 23 602 624 602 624 0.95 8 9 0.0064 0.65 10.7 0.4 1 20 629 648 629 650 0.94 9 9 0.018 1.9 9.3 0.8 1 23 668 691 668 691 0.94
Sequence Information
- Coding Sequence
- ATGGATCGTCAAAAAGAATTGCTAAATCTTTGCAAAccgttatttataaaattaactcGTGTGTCTCATTCAGATTATCATAAATGGAAACAAGAAACAAGCCAAGTTGAACGTCCTCACCATCGTCGTAGACATGCATGGCGAAGAGGCGACTGCAGAAGTTCAAACTCTGTAAGAAATCGGAGAATTAAAAAGCGCTCagcgaaatatatattgagtgaCAGCGACGATGAGTTATCGGAATCAAATACATTCAATGACAATGCTAATGATACAATTTTAAGTAAATGTGAAAAAACTAATGAATCTGATACTGTCGTCCATAATACGCAAATTCAAGTTATTGATAGTTCTATCGTATTACCAAAGAATAATATGCCAATTACTGATAAAGTTGCGTGGAAGTATAAGCGGAAACGGCAGAGAACATCACAATCCACTTCCAACGAACTATTacaagagaatgaaaatattgaagcgTCAAATACAGTACAACCAAATAATTTGGATAATGAAAATGAGCATGAAACTACTCAAGTTGATTTAAgcaaagaaattaaaatagtaTCATCACGATTAGAAGATTCTGATGATCCACAAGTTGAAAAATGGCGATCAAAGAAAAAAGCACTTTCATTACCAAAATCAAGATCGCGTTTACTGCCGAAATCAAATAGTCTTAATTGTACGGTGTGCTCAattgtatttgaaaataaagaagaattatcaaatcatATTTTCAAGCATACACAACGTGAATTACAAGATGCATACAAAGCTGCCAAAACTAAATTACGAGAAAGTGAAAGTAATATTGATGCTGGAAATATCAGCGATGAATTTGATGATTGTGATGAATCGACTAGTAAACTCAATCAATCTACCATTTCAGAATCGCACGCACATAATAATACATCTGAAATAATTCAACCTATACCTTTATCTTTAATAACTACATTGACTCAAGCATCAGAGACTGTGCCAATGGTTATTTGTTCATGTCATACTGAACGTTATCCGCAAAACGATGCAAGTGTCCAAATTGAAATGGTCCTTTATTGTGAAACGTGTCATGTACTCTTTCGTCGTAGTGAATGCTTCGAGACTCATTATCGTTTCAGTGCAAAATGTAATGCAGATCGTTCAAAAGGCAGAAGCCCCAAATTATTTTGCAGCACATGTCGAATAATTCTCAATACATTATCGAATATGCGTCGACATTTGCAGGAGCACGCaagtataaattttcatggGACTGTCACATTTGTTTGCAATATATGCCGAGTTGTATTTTTCGGTGTCGGAACAGTATTTTGCACTCATTGGTTCAATCATGAAAAAGATCCTACATTTGTGGCGAGTCGTTATTCATTTCCAAAATTGTGTATTTCAACTCAAGGTACAAAACCTGCGGGTAGTGGACCAGATGAACAATATGTTTTTGTTGCAGAATATGTTTGTCGTTTATGTAAATTACAATTCTCTTCTGAAAGTGAACTTACAGATCACACTGAAAATGATTGCAATAATGGATCATCAGATGTTCAAgtacaaaataaatcattgtcAGATGCAAAATCAgccataaataatttgaaatctaAATTAAAGTCTACGACAAATCGACCGAAAAAAGATTCATCATCCGCAAATTTATTAGATATGGTTAATAATTGGATTTGTGAATTTTGTAATGGATCTTATTCAAGCCGTAGTGCATTTGAAGAACACAGCACTAAACATTTACAAGAAGATGGATATCCTGGCTATAGCTGTGTGTTCCAGGTGAATGCATCAACagcatttttatgtaatatttgtcGCCGcatttatgataatttgtCAAATTTAATCAAGCATTGGGTAACACAcgaagttataaaatttatttgcactGTCTGTAATGAAAAGTGTTCATCCTATGCTTCATTCGAAGCTCATATTTCCTTGGGTTGTTGGAAGTCTAAGCCTGATTGTCGAGTATGGTTTAATCGGCAACAGCATGTCTGCAAAATTTGTAAATCAATCTTCAAAGCTGCTGAAGAATTAGTTAATCACTATAAGTTTGAACATGGTGCAGCAATTGAAACCAACAATACTAAAAATTCACTATCAAAGTCACTTTCTTTTAAGGAAACACCGCCGGTTTCTGAAACGTCAACTAGTCCACattctaaaaaaaatgaatcaagtAAAATAGCAAGTGCTGATTTACCTCCGAATCTTGAAACTTTATCAGCGTCCGAGAATTCATCTAACTCCAGTTATCCCCAAAATTCAGCAGCGATAATCAATACACAAACTGTCAattcagatattgaaaatgcAGTTAGTAAAGAATCACCGTTACAAAAACTtcgaacaataaaaataactatacCAAATTTGaAATTCACCAATCGACAAATGCGACCGTATCGGTTGATTcgttaa
- Protein Sequence
- MDRQKELLNLCKPLFIKLTRVSHSDYHKWKQETSQVERPHHRRRHAWRRGDCRSSNSVRNRRIKKRSAKYILSDSDDELSESNTFNDNANDTILSKCEKTNESDTVVHNTQIQVIDSSIVLPKNNMPITDKVAWKYKRKRQRTSQSTSNELLQENENIEASNTVQPNNLDNENEHETTQVDLSKEIKIVSSRLEDSDDPQVEKWRSKKKALSLPKSRSRLLPKSNSLNCTVCSIVFENKEELSNHIFKHTQRELQDAYKAAKTKLRESESNIDAGNISDEFDDCDESTSKLNQSTISESHAHNNTSEIIQPIPLSLITTLTQASETVPMVICSCHTERYPQNDASVQIEMVLYCETCHVLFRRSECFETHYRFSAKCNADRSKGRSPKLFCSTCRIILNTLSNMRRHLQEHASINFHGTVTFVCNICRVVFFGVGTVFCTHWFNHEKDPTFVASRYSFPKLCISTQGTKPAGSGPDEQYVFVAEYVCRLCKLQFSSESELTDHTENDCNNGSSDVQVQNKSLSDAKSAINNLKSKLKSTTNRPKKDSSSANLLDMVNNWICEFCNGSYSSRSAFEEHSTKHLQEDGYPGYSCVFQVNASTAFLCNICRRIYDNLSNLIKHWVTHEVIKFICTVCNEKCSSYASFEAHISLGCWKSKPDCRVWFNRQQHVCKICKSIFKAAEELVNHYKFEHGAAIETNNTKNSLSKSLSFKETPPVSETSTSPHSKKNESSKIASADLPPNLETLSASENSSNSSYPQNSAAIINTQTVNSDIENAVSKESPLQKLRTIKITIPNLKFTNRQMRPYRLIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -