Basic Information

Insect: Microctonus brassicae
Gene Symbol: Bcl11a
Assembly: GCA_940306215.1
Location: OW675808.1:6103426-6113605[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.084 8.6 7.2 0.1 2 23 169 191 168 191 0.93

2 6 4.2e-07 4.3e-05 23.9 1.6 1 23 486 508 486 508 0.99

3 6 0.00022 0.023 15.3 0.7 2 23 527 549 527 549 0.97

4 6 9.7e-08 9.9e-06 25.9 2.9 2 23 750 771 749 771 0.97

5 6 7e-06 0.00071 20.0 3.3 1 23 777 799 777 799 0.99

6 6 3.2e-05 0.0032 18.0 0.4 1 22 807 828 807 828 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.084	8.6	7.2	0.1	2	23	169	191	168	191	0.93
2	6	4.2e-07	4.3e-05	23.9	1.6	1	23	486	508	486	508	0.99
3	6	0.00022	0.023	15.3	0.7	2	23	527	549	527	549	0.97
4	6	9.7e-08	9.9e-06	25.9	2.9	2	23	750	771	749	771	0.97
5	6	7e-06	0.00071	20.0	3.3	1	23	777	799	777	799	0.99
6	6	3.2e-05	0.0032	18.0	0.4	1	22	807	828	807	828	0.97

Sequence Information

Coding Sequence: ATGGAATTATTGGTTTTGGTTGGGACAAGCCTCAGGGCTGATCcGGAGCCGTCACAAGGGACAATTGCACCTGACACAGTCCAATGCGGTGGATGCCGCGCATCTTATCCTCTCGCTGATATAGTCCGTTTTATCGAGCACAAGGTCAATCACTGCCGAAGTAATCTTCAAAATTGTCACAGTCCGCCACCAGCGGCCGCACATGAAGATTCAGATCCAGAAGACGCGCTTGCTCTTAAATCCACTGATCAAGAAAAACTAAACTCCGTGCCAAGTATATCAGCGCCTATAAATAAACGTAGTGGCAGGGTGGAAAGTCCACCCACGCCTCAGGGTAGCGCACCAGACAGTGGTAGTCCAATTGAGCTTAGAGCGAGCGCAAGTTCAACCCCCAAGAGACGCACAGAGGGCAATGATGAGGAGAAAGTGGAGCTGCCAAAGAAGCCCAAGACCGCATCCGTTGATGCTGATACCAACACCGTCAATTCCGAACCACGATGTATGGTTTGCTCTCAATGTTCACGTCGTTTAAATTCAGCGTGGGAATTATTGCAACATGCGCAAAATGTTCATGGAACGCGATTATATGGCTCATCGAGCTCATTGACAAACTCGTTGTCCAATACACCGGCGCCAAGTCCACCAACGCCAACCCCTAGTCATTCTCATCACCAAAGTCCATCCAGTCATTTGAACATCAGTGGTAAGTCAACGGGAAGTTCATCGGCAGCCAATTCCTCGGGCGGAACGAATTCCAGTGGAAATAGCAGTCGTCAACAGCTTCAGTCATCAGCTTCTCTCATTGCCGATCCACTTCACAGTTTTCTTAGGCTTCCACAACACTTGGAAAGAAGTTTTCCACCGATGTTCAGGCCGGAATTTTTGGCATTAAATCCCTTAGCTGGTTATCGAGGTCTTCAAGATCTCCAAACGGCAACGAGAAATCTCCAAAACCTTGGGGATCCATTAAGGGGTATGGATGGACTAAATCTCGGTGATCCATTAGTGAGAAGTTCGTTAGATTCACTTAGTAATGCAAGAAATCTTGCTAATCTAACTGAACTATCCCACGGCCGTGGTTTAGCCGGTCAGGGTCATCAACCTCAATTAGAAGCCAATCTGGATTTTTATTCGGCGCGCCTAAGGAGCCTCGCTAACCCATCCTTAGGCGCGGCTCCACCAAATCCACCGACAAATTCAGCTTCTATTATCCCTGTTAATACTGttcaacaacagcaacagcaacaaatTAAACATTCAGTTGATTTAAAATCGAGTCCAGCTTTAACAAATCCACCAAATATTACAGCGcacaataattcacaaaaagaaaattcaccACCATGCTACACACAAAGTCCAGTTGGccataacaataataattcaactgaCAGCGGTAAAACTAGTCCGCCGGTTGTGTCCACGCCAATAATTACCGATTCATCTGAGACAATTTATACTTGTGAAGTGTGCGAGAAAAAATTTAGATTCCAATCAAATCTTATTGTACATCGGAGAAGCCATCAAGAAAAAGAACGGCAATTTCAAGAGCCAACTCAAGAAGGTATTGGAATTGCACGATGTGAAGTATGCGAACTTGAACTCACTAATTTTTCCGAGCTCCGTAAGCACATGAGAAAGGAGCATCAAGAGTCTATTAATGCTGCAAGTCCACAAGGAAGCGTTGAAACTGTACCTGATGATGGATCTAGTTGTGATGAAAATATGGAATTGGATGATGTAGATGATAATGAGCAAAAGggaaatgataatattgaagaaaatacaCCGGAAGACTTGAGTACGACGCAGGGTCAATCAAATGACGAGAGTAGTGGACGAGTTGAAACAAAGCCAAGTCTTGTCGGTgatttaatggaaaaatttggTCTCAATAATATTGCACAGTATTCAGAAGCTTATAGGCAAGCACTTCAAGAAAATCATCGCGGTAGTTTTATAAAAACTGAAACTTCTGCCAATCTAACAAATTCattgaacaataataaagaaaaagacagTGCACTTTCGccaacaaattttaattcatcaacgaCTGCTAATATATTTTCGGGACAAGGTTTTCCTCGAAATACCGCACCGGAATTCGGTGGACTATGGTTACCTAGTCCTCATTACCTAGAAAACAGTGAATTTCGTAAAGTATCTAAAGCCACAACATCAAGTTTAGCACTTCAGGGTTTACCAAGTCCACTATTAAAAAAGGAACGAAGTGGCAGAAATGATACTTGCGAATATTGTGGTAAAGTCTTTAAAAATTGCTCAAATTTGACAGTCCATAGGCGATCACACACCGGTGAAAAAccatataaatgtgaattatgTTCGTATGCATGCGCACAAAGTTCAAAATTAACAAGACACATGAAAACACATGGTAGACATGGCAAAGATACGTATAAATGTCGTTTCTGTGAAATGCCATTTTCCGTACCCAGCACTTTGGAGAAACACATGAGAAAGTGCGTTGTGGTGGTCCAACAAGGGCCTAAATTGTCATTACCATATCCCGGTAGTCAAGATGAGGATTCATCGCTCAGTACCAAGGATACTTGA
Protein Sequence: MELLVLVGTSLRADPEPSQGTIAPDTVQCGGCRASYPLADIVRFIEHKVNHCRSNLQNCHSPPPAAAHEDSDPEDALALKSTDQEKLNSVPSISAPINKRSGRVESPPTPQGSAPDSGSPIELRASASSTPKRRTEGNDEEKVELPKKPKTASVDADTNTVNSEPRCMVCSQCSRRLNSAWELLQHAQNVHGTRLYGSSSSLTNSLSNTPAPSPPTPTPSHSHHQSPSSHLNISGKSTGSSSAANSSGGTNSSGNSSRQQLQSSASLIADPLHSFLRLPQHLERSFPPMFRPEFLALNPLAGYRGLQDLQTATRNLQNLGDPLRGMDGLNLGDPLVRSSLDSLSNARNLANLTELSHGRGLAGQGHQPQLEANLDFYSARLRSLANPSLGAAPPNPPTNSASIIPVNTVQQQQQQQIKHSVDLKSSPALTNPPNITAHNNSQKENSPPCYTQSPVGHNNNNSTDSGKTSPPVVSTPIITDSSETIYTCEVCEKKFRFQSNLIVHRRSHQEKERQFQEPTQEGIGIARCEVCELELTNFSELRKHMRKEHQESINAASPQGSVETVPDDGSSCDENMELDDVDDNEQKGNDNIEENTPEDLSTTQGQSNDESSGRVETKPSLVGDLMEKFGLNNIAQYSEAYRQALQENHRGSFIKTETSANLTNSLNNNKEKDSALSPTNFNSSTTANIFSGQGFPRNTAPEFGGLWLPSPHYLENSEFRKVSKATTSSLALQGLPSPLLKKERSGRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRHGKDTYKCRFCEMPFSVPSTLEKHMRKCVVVVQQGPKLSLPYPGSQDEDSSLSTKDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00452179;
90% Identity: iTF_01000823;
80% Identity: -