Mbra010639.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- Prdm15
- Assembly
- GCA_940306215.1
- Location
- OW675807.1:1728919-1731986[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 8.2 8.4e+02 0.9 0.1 2 9 32 39 31 39 0.85 2 15 7.6 7.7e+02 1.0 0.1 2 23 249 270 248 270 0.91 3 15 0.00059 0.06 14.0 2.5 2 23 278 300 277 300 0.94 4 15 6.2e-06 0.00063 20.2 0.9 3 23 454 474 452 474 0.97 5 15 0.0093 0.95 10.2 0.5 1 20 478 497 478 499 0.93 6 15 1e-05 0.0011 19.5 4.3 1 23 507 529 507 529 0.97 7 15 0.078 7.9 7.3 4.0 2 20 534 552 534 554 0.93 8 15 1.1e-05 0.0011 19.5 7.0 1 23 558 580 558 580 0.97 9 15 5.1e-05 0.0052 17.3 0.4 3 23 602 622 601 622 0.98 10 15 0.0026 0.27 11.9 1.3 1 23 627 649 627 649 0.98 11 15 0.00071 0.073 13.7 0.1 2 23 655 676 654 676 0.95 12 15 0.0021 0.22 12.2 8.5 1 23 681 704 681 704 0.96 13 15 4.6e-05 0.0047 17.5 2.9 1 23 710 732 710 732 0.99 14 15 8.5e-06 0.00087 19.8 1.1 1 23 741 764 741 764 0.96 15 15 1.5 1.6e+02 3.2 5.2 1 23 769 792 769 792 0.95
Sequence Information
- Coding Sequence
- ATGACACCTTATAAAATCTCACCcacaatgcaaaataaaaatgatggcGCGAATAATGTTAAACAAGGCAATGGGACACAGACCTACATATTGGTATGCAATATTTGTGGTCAATCTCACCATACTCATGATTGTCCATTTCTTCAGGATTTACATTATATCAAAGATACACCACAGCTATCACGAGCACGACAAAGTCTCCCAACAGATCTGGAACTCACCCCAATGGCTGATAGCACAATAAGTGTTATTGCAAAGCGTGATTTTCAACGAGGAACAACATTTGGACCTTTTGAAACCAGCCGTAATTGGGCAATGAatccattgataatatttcctataaaaatatttaaaaataactgCAGTGAAATTTCATATCTCGATTATTCCGATGAGACTACCAGTAATTGGATGTGCTTCATACAACCAGCGTCAAATGCTaaagaacaaaatttaatttgttatcaaatgaaagatgatattttttatactgcaATGCGAACAATTTCTGCTGGTGAACAACTTCGCGTTTGGTATGCACCGTATTACgctattaaaatgaaaatgccaTTGTACAATAACGATTCCATTAGTGATGAGACAATTTATACtaatgaaaaatcaacaaatacaattaatacatatataaataattatacatttattaatattaatgaatcatCAGAATTAGCTGAACGTCTTTCAGCTCAACGATTGGGTGCAAAAGATGTCAAGGAAAACTGGACATGTCGTATTTGTTCGTCagaaattaaaacaattgttGCATATGCAAAGCATTTAATGGAACATTATAAACCACTTCTTGGCACATATtgcaatatttgtaataaaaaatttcacagtaTGTCTCTATTAGCGAAACACCGAATTGTTAAGCAtacagaaattaataaaaatagtgaAGCCATTGGAATTCCAACTTCTGGAAATCAACAGCAACAAAATGCTCAAACAATTTTACTCAATATGAACAATACTGATCAACAAACATCAGATGCTATGAAAGATATATTGGAGAGATTCAAAGCAGGCAATACAATGACAGAAAGTAATCTTGTGATGTCGGGAAAAGATAATCAACATACAGATCTTTCATTACTTGATACAAATACACTAAACGTCAATGATTTACTTCAAAACAAtggtaatttaattgaaaattcttCATTGAAATCTATATTGGAAAATCagtgtttgaatataaatataaattcaatggctaattcaattttatcggAGAACATATCAGAAGTTGAGGCAGTTAAATTTAATGTCGAAGAACTTCTAGACATTGCGCCCGATGTTGAGAATGTAAATCAACGCGTGAACGATCTTGATTGCGATATTTGtgggaaaaaatttatcaaaactgATTATCTTTATCGACATTTACGAAAGCATACtggtgaatttatttgttctgTTTGTCTTTCAGTATTTGCACGAAAAGAAAATCTTATGTCGCATACGTGTTTAAATCAAAAAGATCATCTTGACTTTGAGTGCCCATATTGTCAAAAGCattttgcaatgaaaaaatatttaaaacgaCACATGTCACAGCATTTAAGTTTTAATACTTGCAAATGGTGTCGTTGTATATTTACCTCACAAACTGAATTAAATGCACACAAGTGTCAAGCACCAAAACATGTTTGCGATCATTGTGGTAAGAGATTTGTTCATCGTGCTCATCTTCTTCGTCATATAAAACTTCATACGGATCCCAAGCCTAAAGCAAcaaagacaaagaaaaaagtaattgACGAAAAGCCGGCCATATGCGAAAAATGTGgcgatatatttaaatcaccATACAGTTTAAAACAACATTTAAGATCACACGGTGAGCGTAACTACGAATGTGATATTTGTCAGCGACGTTTTCATCGCATTGGCGTTTTAAAAGAGCACAAACAAATACATCAATCAGCGCAAATACCATGTAATATTTgtggtaaaaaattaaaaagtaaaaaagccCTTGACGTTCATGTTTTACTTCatggcaataaaaaatttcaatgtgaTAAATGTGACAAGAGCTTTTTTCAACGATGCAATTATCTCAAacattataaacatattcacggtgaaaaaataatttataaatgtacgCATTGTCCAACGCAATTTACCAGTGAATCAGTATTTAATAAACACATTGAAACCCATGCAAACAGTCAAAAAGTTTCACAATTTTCTTGTACATTATGtacaaaatcatttattgGACAGTATCAATTGAAACGACACATAGGAACAAGTCACAGTGGTTTTATTTATCGCTGTCCATATTGTATAATGACTGCAAAGCATCGACACAGTATGCGACGACATTTTGAACGGCAACACAAGAGTTTTAATGAAGAATGGAATAAACCTGGGTTCGTTAATCAACTTATGGaaaaagttaataatattccaacgacaaatatagaaaaacctacaattgaatttaataaaaatgtaatagcAGATAATCAACAATTAGTATTACATtcggataataataatatcaatgagaCATTCACAAATACGCCACAGGCGTCATTGAATAATCAAGATATACTTCTTCAAGTGTCAAATGTTGACCAAACggcaattgaaaataatcaattaccATTAACTGAAGTACCACAAATAAGTATCAGTGAGACAGATACACAATTGGCTGAATCTGTATTgaataatacttatatattcgGTGAAGATGGTGGAGATATTatgttttatgtattaaatagtGCGCcagttaatttttaa
- Protein Sequence
- MTPYKISPTMQNKNDGANNVKQGNGTQTYILVCNICGQSHHTHDCPFLQDLHYIKDTPQLSRARQSLPTDLELTPMADSTISVIAKRDFQRGTTFGPFETSRNWAMNPLIIFPIKIFKNNCSEISYLDYSDETTSNWMCFIQPASNAKEQNLICYQMKDDIFYTAMRTISAGEQLRVWYAPYYAIKMKMPLYNNDSISDETIYTNEKSTNTINTYINNYTFININESSELAERLSAQRLGAKDVKENWTCRICSSEIKTIVAYAKHLMEHYKPLLGTYCNICNKKFHSMSLLAKHRIVKHTEINKNSEAIGIPTSGNQQQQNAQTILLNMNNTDQQTSDAMKDILERFKAGNTMTESNLVMSGKDNQHTDLSLLDTNTLNVNDLLQNNGNLIENSSLKSILENQCLNININSMANSILSENISEVEAVKFNVEELLDIAPDVENVNQRVNDLDCDICGKKFIKTDYLYRHLRKHTGEFICSVCLSVFARKENLMSHTCLNQKDHLDFECPYCQKHFAMKKYLKRHMSQHLSFNTCKWCRCIFTSQTELNAHKCQAPKHVCDHCGKRFVHRAHLLRHIKLHTDPKPKATKTKKKVIDEKPAICEKCGDIFKSPYSLKQHLRSHGERNYECDICQRRFHRIGVLKEHKQIHQSAQIPCNICGKKLKSKKALDVHVLLHGNKKFQCDKCDKSFFQRCNYLKHYKHIHGEKIIYKCTHCPTQFTSESVFNKHIETHANSQKVSQFSCTLCTKSFIGQYQLKRHIGTSHSGFIYRCPYCIMTAKHRHSMRRHFERQHKSFNEEWNKPGFVNQLMEKVNNIPTTNIEKPTIEFNKNVIADNQQLVLHSDNNNINETFTNTPQASLNNQDILLQVSNVDQTAIENNQLPLTEVPQISISETDTQLAESVLNNTYIFGEDGGDIMFYVLNSAPVNF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000778; iTF_01002282;
- 90% Identity
- iTF_01000778;
- 80% Identity
- -