Basic Information

Insect: Microctonus brassicae
Gene Symbol: gtf3a
Assembly: GCA_940306215.1
Location: OW675803.1:15505357-15510346[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 2.3e-05 0.0023 18.4 0.1 1 23 877 899 877 899 0.97

2 17 0.12 12 6.7 0.2 1 19 905 923 905 926 0.91

3 17 0.58 59 4.6 1.3 2 23 932 953 931 953 0.95

4 17 4.5e-05 0.0046 17.5 1.2 3 23 962 983 961 983 0.98

5 17 0.0042 0.43 11.3 1.7 1 23 990 1013 990 1013 0.93

6 17 9.1e-05 0.0093 16.5 0.7 1 23 1019 1042 1019 1042 0.94

7 17 0.61 63 4.5 0.9 2 23 1050 1070 1050 1070 0.94

8 17 1.9e-07 1.9e-05 25.0 2.3 2 23 1076 1097 1075 1097 0.97

9 17 2.1e-06 0.00022 21.6 0.2 1 23 1103 1125 1103 1125 0.99

10 17 0.0041 0.42 11.3 2.8 2 23 1137 1159 1136 1159 0.95

11 17 0.44 45 4.9 2.6 1 23 1165 1188 1165 1188 0.92

12 17 0.0015 0.16 12.7 2.6 2 23 1210 1232 1209 1232 0.95

13 17 0.00039 0.04 14.5 0.6 2 23 1239 1261 1238 1261 0.96

14 17 3.9e-05 0.004 17.7 1.7 2 23 1269 1290 1268 1290 0.97

15 17 0.0012 0.12 13.0 2.3 1 23 1296 1319 1296 1319 0.96

16 17 0.81 83 4.1 3.6 2 23 1326 1347 1325 1347 0.96

17 17 0.23 23 5.8 2.0 1 23 1353 1375 1353 1375 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	2.3e-05	0.0023	18.4	0.1	1	23	877	899	877	899	0.97
2	17	0.12	12	6.7	0.2	1	19	905	923	905	926	0.91
3	17	0.58	59	4.6	1.3	2	23	932	953	931	953	0.95
4	17	4.5e-05	0.0046	17.5	1.2	3	23	962	983	961	983	0.98
5	17	0.0042	0.43	11.3	1.7	1	23	990	1013	990	1013	0.93
6	17	9.1e-05	0.0093	16.5	0.7	1	23	1019	1042	1019	1042	0.94
7	17	0.61	63	4.5	0.9	2	23	1050	1070	1050	1070	0.94
8	17	1.9e-07	1.9e-05	25.0	2.3	2	23	1076	1097	1075	1097	0.97
9	17	2.1e-06	0.00022	21.6	0.2	1	23	1103	1125	1103	1125	0.99
10	17	0.0041	0.42	11.3	2.8	2	23	1137	1159	1136	1159	0.95
11	17	0.44	45	4.9	2.6	1	23	1165	1188	1165	1188	0.92
12	17	0.0015	0.16	12.7	2.6	2	23	1210	1232	1209	1232	0.95
13	17	0.00039	0.04	14.5	0.6	2	23	1239	1261	1238	1261	0.96
14	17	3.9e-05	0.004	17.7	1.7	2	23	1269	1290	1268	1290	0.97
15	17	0.0012	0.12	13.0	2.3	1	23	1296	1319	1296	1319	0.96
16	17	0.81	83	4.1	3.6	2	23	1326	1347	1325	1347	0.96
17	17	0.23	23	5.8	2.0	1	23	1353	1375	1353	1375	0.95

Sequence Information

Coding Sequence: ATGGGTGAGCCAAAAAACGCGACGATATATTTGACTAACATTGAGgacaataatatcatcaaacTACCAATTAGTGGGCTGAATGATGGTAGTGTTTGTATGTTGAATGAAACAGCTAATGAATCAACGTGGGGAAAAGAAACTGTCGTTGACCAGGAAACCTGTAAATTAATTCAGCTACTTGAAGAACCCGTAAATGTTCATGCAAACGTTAAGCATGTTAAACAATCAATTGATCCTACTATTGTTGCTTCTGAATCTGACACATTGTATGAGTATAATCAATACAATTGTGAGGCCAAGTCAGatttaaatgtgaatttaCAGAAAAACAAAGATCATAATTACAGTGATttgtcaaataataaaaatgtaagagATAGTTTGTTGGCGCATGGAATAGTGAATGATGCTGTTTGCGGTAATATATTAGTAAACACAAGTGACGACAAAAATATGTCTATagcaacgaaaaataattcagtgaGTCAAgtgaagaatataaatgaCCTGAAAAAAGTGATTTCGAAAGTAAAGATTTTAGGAGCTGAGGTGAATACTTTGAAAGAATTGACTCAAGCTCATtccaatgataaattacatATTATGGAAAGTAAAACACCAAAACTGATTGATTCTAGAGAAAAATTAAGCAGTTATTGTCGCACGTGTGCTGGATTAAAGATACCTTTGATAGATATATTTAGTGATAGAGGTGTTCAAATGCGTTTAAATCAACAGATGAAACATTTAGAGAATATAGATCAGCACGATAGTTTATCAACACAAATGTGTATGGATTGTATTTGCGATTTGAAAATGAGCTATAAGTTTTTTATGCAAATTAAAAAAgccgaaataaaattaaaatcaattcataCATCATTAAGCACGGTGGTAACTACCCGTTTACTAGAGAAccagtataatatattacctGACAATAATTTGATTTGCTCCGATAAATCGAATGTCACACCAGTGAGTAATTATGAATGCATAAGAACTGaggataatgatgatgatgttgttgatgatgatgatgatgatgatgatgataatgatgataatgatgataatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgacaatgatgatgatgatgatgatgctgctactgctgctgctgatgattatgatgataatgatgctgttgatgatgataatgatgatgatgatgatgatgatgatgatgatgatgatgatcaggTAGAGTCGATCGAAGAATTCGATCCAGAAGATCATGCTCTTGAATCAGGCGTTTGCGGGAACATCAAAACAGAATCTGAAGctgaaaacaatattaaaaaggATGATGACTCAGaaatgcaattaaattatcacaaaAGCAATATAATGAGTTACTCAAATAATGTAAACGATAACGAGATGAATGATAGTATTATGGAAAATAAGATAATGAATGAGACGTTACATGATCATGTAAAAGAACTTAATGGCGATGTTAAAATAGAGCTTGAGAATGGGATATTTGATACATGCTTGGAGTCATCATCAACAAATGGTAGAGGAGATATTACTAGGGAGAATAGTAAACAACCTAATATACTGAAGAGAAAACCTGCGTGGCATGGTAAAGCTGGAAATGTCATTAGTACAAATACAGATTCAATAGGCAAAGAAGccaaaattcataaattaaatactgtGAATATCTCACCATCAGATGAAGAAGGAATAATGTATGTGACTGTAAAAGGCTCGAAACCAAATGAGTTACTTTTagtaaaagttaaaaaaatggataaatcaggagaaaaaaaagatgataagaattcaattaaaaaattgattgatgtTAAACCCACGGAAAAGAGTTTGAAAACGTTGCCACTGAAGGATGTATTTATTGATCgttcaaaaaaattagacAATCGTGAAGCAATTATTGAAGAACAAATtgaacaatacaaaaaaaaacgtgaaaaAGTCCTTGGTGGTTGTAATACTGGTAGTGGTGCTGATACCGCCGCTACAAATATTGTTGATACTACTCCATTCGTGCTAGGTGCAGCTGAAACAGATGAATTCGCTGATGGAACcttacatttaattaattttagtaatAATTCGAAGAAGAATTCATCATTCGGAAATACGATGGTATCAAAAGAAGAATCAACGAACTGTATTTGTGAAGAAAAAGATGATAtcgaaataacaaataatttccaagTAAAAGATGAAAGTGAAATTTGTGAACAAAGTAAAGTACATAACAGTGAACATGAAAATACCAAAGAGTATTTAGCTCGACTGATGATGATCAAACAAAAATGGGAAGAGGCCAAAtcgaaaaaagaattattgcaGAAAGAGCTTGATAATTCATACACAGAAGGGAATCtcgaaaaattatcaagaatATTAGGCGAAAAGGAACgaaatttaaaagaatttcAGGATTATCTCaagcaaagaaaaatagtTATTACTCGATTAAAGGATCAagatataatatcattatatgaAGATCGTAATATTTCATCGATGCATAATAAATTACCagatttaattgatgaaaatccATCAATATATAGTTTAGATGATAATAATCTTTTTGATTGTGATTATTGTCCACAAATATTTTCCACTCGTGGCGCTCTCGAGGATCATTTGAAGAGCCATgactacaaaatattttatttttgtgaggATTGTGGTAGTGAAtttccaaataataaaacaagacGAGCGCATAATAtcacatgtataaaaaaactAATATGTAAGTATTGTGATTTCATGCTAGAATCAAAAGGAAAGAAACGACAACATGAACAAAAACATTGTGATACCATTTTTGGTCAGCTTTGCGATATATGTGGCGAAAAATTTAAACATCAGGGTACTTTAGATCAGCATATAAAAACTCAACATATGAGCTGGGAAAAAGTATATCAATGTCCAAAATGTCCGAAGAAATTCgcattcaaacaaaaattaagttTTCATGTAAAATCAGTTCATACAACATTACGAGCTTATTTATGTGAAGATTGTGGTGCTGACTTTAAAAATCCAGCATCACTCAGACATCATCGAATAAGAAAACATCAGCCAACTAGTAATAAACGCGAATGTCCAGTTTGTCACAAGCTAGTTCCATTTTACAGTTTGTCCAAGCACATGTATACTCATAAAGCATACACGATACAATGTCCTCATTGTGATAAAATGTTCAAAAATACATCGACTTTGAAGCAACATATAAGAATACATGAAGATCAGAGACAATATCGTTGCGATACTTGTGGTGTAGGCTTCAATCGCCGTGATGGACTCCGCTTGCACATGAGAGTTCATCAAAAATCTGATAGTCGTGCACTTAAAGAGTGTTCATGTCAAATATGCTCggaaaaatttccaaatcatTCGATGCTTGTAATTCATCGAAATAGAGTACACAAGGACGGTAAACAATATACTTGTCATATATGCAATAGATCAATGCTGTCAACCCGATCTTTAGAGTGGCATATGTCACACATTCATAATGAAACGCCAACGGGAGTTACACTGGACGACTCAGCAAATTCAGTTCAAATGAAAAGAGTATCATGTAACCATTGTGATAAAACATTCAAAACAGAAATGATTTTACGTacacatattaaaaatacccatatggaaaaaaatccAGTCAAATGTTTGGATTGTGATTTAATGTTCACGTCAGAAGTTCGATTAAGACATCATATGATGATTGTTCATAATCGATTAGAAGGAACATTAACATGTCCTCATTGTCCCAAGCGTTTCGTTAATCAATTGCGACTTAAAACTCACATGATTTCACATTCGGAAGAGCGGCCTTATACGTGTGAAATATGTggtttcaatttaaaaacaaagattcaattgataaaacatCATCAGAATAGACATAGTGATGAGAGACCACTCCAGTGTCGTTATTGTGAATGGCGATGTAAACAAGTTAGTGCTTTAGTTTGCCACGAGAGAACTCATACCAATGAGCGGCCTTATTCATGCATTGTATGTAAGCAACGTTTCAAATATCTTGGCGATAAAAATAAGCATGAGCGAAGACACGAGAGTCTCGGCGGTTCAGGATTTAAGAGAATTGTCGTTGGCCGAAATGTTAAACACCTAAAAAATCATGATGGAGAAATTTCAGCATCCGAAAATGACCCATTAGAGCAGGAATACCAAACCATTGATGCTCATTTAACTGATCAACACGTTGGATGTGATATTAAATATGGTGAAGAACAACAAATTATTAAGTTTGAAGGACAGGAAATAGAGAACGAGAAGCAACACCATATTGAAGAGCTAGATCAAGAGCATCAGCAACATATTCAACAAGGGATTGATGAAGAAGGTGATGACGAGGAAGAGGACGAAGATGATGACGAGCtcgatatatataatgaagagGAAGAGGAAGATTTGGAGCATCAACAACCGCAGGAAAAGAGAGAAGCCGAAGTAGATAATGATTATAAGCAAGTGTATAAACATGAATATGAGGAAATTTCACGAGAGACGTCCGAAGCTGCGGAAGTTATTATGAATATGGAAGATGCAACAGTTTATACCGAAGAAGTGACGGCAGATAATATCGAAAGTGCAGAAATGATAACTGCAGAAATGATGacaaatcaaattttacaaaCGGGAACAGTCGTACATATACAACAACAGGACGATGATGGGAAAATTCAAGTAATTCCCGTTATGTTGTCATTACCTGACTTGACGGATTCGGCTACGGAAATGAATTTAACTACTggatcaataatatataataattga
Protein Sequence: MGEPKNATIYLTNIEDNNIIKLPISGLNDGSVCMLNETANESTWGKETVVDQETCKLIQLLEEPVNVHANVKHVKQSIDPTIVASESDTLYEYNQYNCEAKSDLNVNLQKNKDHNYSDLSNNKNVRDSLLAHGIVNDAVCGNILVNTSDDKNMSIATKNNSVSQVKNINDLKKVISKVKILGAEVNTLKELTQAHSNDKLHIMESKTPKLIDSREKLSSYCRTCAGLKIPLIDIFSDRGVQMRLNQQMKHLENIDQHDSLSTQMCMDCICDLKMSYKFFMQIKKAEIKLKSIHTSLSTVVTTRLLENQYNILPDNNLICSDKSNVTPVSNYECIRTEDNDDDVVDDDDDDDDDNDDNDDNDDDDDDDDDDDDDDDDDDDNDDDDDDAATAAADDYDDNDAVDDDNDDDDDDDDDDDDDQVESIEEFDPEDHALESGVCGNIKTESEAENNIKKDDDSEMQLNYHKSNIMSYSNNVNDNEMNDSIMENKIMNETLHDHVKELNGDVKIELENGIFDTCLESSSTNGRGDITRENSKQPNILKRKPAWHGKAGNVISTNTDSIGKEAKIHKLNTVNISPSDEEGIMYVTVKGSKPNELLLVKVKKMDKSGEKKDDKNSIKKLIDVKPTEKSLKTLPLKDVFIDRSKKLDNREAIIEEQIEQYKKKREKVLGGCNTGSGADTAATNIVDTTPFVLGAAETDEFADGTLHLINFSNNSKKNSSFGNTMVSKEESTNCICEEKDDIEITNNFQVKDESEICEQSKVHNSEHENTKEYLARLMMIKQKWEEAKSKKELLQKELDNSYTEGNLEKLSRILGEKERNLKEFQDYLKQRKIVITRLKDQDIISLYEDRNISSMHNKLPDLIDENPSIYSLDDNNLFDCDYCPQIFSTRGALEDHLKSHDYKIFYFCEDCGSEFPNNKTRRAHNITCIKKLICKYCDFMLESKGKKRQHEQKHCDTIFGQLCDICGEKFKHQGTLDQHIKTQHMSWEKVYQCPKCPKKFAFKQKLSFHVKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPTSNKRECPVCHKLVPFYSLSKHMYTHKAYTIQCPHCDKMFKNTSTLKQHIRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHQKSDSRALKECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCHICNRSMLSTRSLEWHMSHIHNETPTGVTLDDSANSVQMKRVSCNHCDKTFKTEMILRTHIKNTHMEKNPVKCLDCDLMFTSEVRLRHHMMIVHNRLEGTLTCPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCEWRCKQVSALVCHERTHTNERPYSCIVCKQRFKYLGDKNKHERRHESLGGSGFKRIVVGRNVKHLKNHDGEISASENDPLEQEYQTIDAHLTDQHVGCDIKYGEEQQIIKFEGQEIENEKQHHIEELDQEHQQHIQQGIDEEGDDEEEDEDDDELDIYNEEEEEDLEHQQPQEKREAEVDNDYKQVYKHEYEEISRETSEAAEVIMNMEDATVYTEEVTADNIESAEMITAEMMTNQILQTGTVVHIQQQDDDGKIQVIPVMLSLPDLTDSATEMNLTTGSIIYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01000771;
90% Identity: iTF_01000771;
80% Identity: -