Basic Information

Insect: Microctonus brassicae
Gene Symbol: -
Assembly: GCA_940306215.1
Location: OW675806.1:11287895-11291059[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.2e-06 0.00094 19.7 0.3 1 23 370 392 370 392 0.97

2 15 0.33 34 5.3 0.3 3 19 400 416 398 416 0.91

3 15 6.9 7.1e+02 1.2 0.9 3 23 426 446 425 446 0.94

4 15 8.3e-05 0.0085 16.6 1.6 3 23 455 476 453 476 0.97

5 15 0.00025 0.026 15.1 0.9 1 23 483 506 483 506 0.95

6 15 0.0038 0.39 11.4 0.8 1 23 512 535 512 535 0.91

7 15 5.5e-08 5.6e-06 26.6 0.4 2 23 561 582 560 582 0.96

8 15 8.9e-06 0.00091 19.7 0.8 1 23 589 611 589 611 0.96

9 15 3.6e-05 0.0037 17.8 0.7 2 23 622 644 621 644 0.95

10 15 0.093 9.5 7.1 3.0 1 23 650 673 650 673 0.93

11 15 0.00011 0.011 16.3 2.3 2 23 695 717 694 717 0.95

12 15 0.001 0.1 13.2 1.1 2 23 724 746 723 746 0.96

13 15 0.0015 0.15 12.7 1.7 1 23 755 778 755 778 0.94

14 15 0.0076 0.78 10.5 1.0 2 23 785 806 784 806 0.97

15 15 0.065 6.6 7.5 2.3 1 23 812 834 812 834 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.2e-06	0.00094	19.7	0.3	1	23	370	392	370	392	0.97
2	15	0.33	34	5.3	0.3	3	19	400	416	398	416	0.91
3	15	6.9	7.1e+02	1.2	0.9	3	23	426	446	425	446	0.94
4	15	8.3e-05	0.0085	16.6	1.6	3	23	455	476	453	476	0.97
5	15	0.00025	0.026	15.1	0.9	1	23	483	506	483	506	0.95
6	15	0.0038	0.39	11.4	0.8	1	23	512	535	512	535	0.91
7	15	5.5e-08	5.6e-06	26.6	0.4	2	23	561	582	560	582	0.96
8	15	8.9e-06	0.00091	19.7	0.8	1	23	589	611	589	611	0.96
9	15	3.6e-05	0.0037	17.8	0.7	2	23	622	644	621	644	0.95
10	15	0.093	9.5	7.1	3.0	1	23	650	673	650	673	0.93
11	15	0.00011	0.011	16.3	2.3	2	23	695	717	694	717	0.95
12	15	0.001	0.1	13.2	1.1	2	23	724	746	723	746	0.96
13	15	0.0015	0.15	12.7	1.7	1	23	755	778	755	778	0.94
14	15	0.0076	0.78	10.5	1.0	2	23	785	806	784	806	0.97
15	15	0.065	6.6	7.5	2.3	1	23	812	834	812	834	0.97

Sequence Information

Coding Sequence: ATGAGAGATCGATGGATTGAAGCAATGCGTTGTGAAAATTTCCAACCAACGCAATATACCAAAATTTGTTCAAAACATTTCACTCCTGATTCTTACGTGAGCAATTCTCCaagttcaaaaaaatttttgaaaaaagatGCTGTACCAAGCATTTTTGATTTTCCAATTCAGTTCATACAGAGAACAACACCTAGAAAACTTCCGGAATCGAGATTGCAACCACAAAATATTGaggttgaaaatgaaaatgaaccaCATAAACACACAGTAATAACAAATGACAAGATATTCACAGAACCTcttgtaaaaaagaaaaaagcttCCTATGTTGGTAATTTCAAAAAACGTTCTTattcaacgaaaaataatcGGTATCAATTTATGATGAACATGGTGCTGACAATGAAACAGAAGCAGATAAGAAAATTACAGCAGTATAATAGACAGCTTCTTAAGAAAGTATCTAATTTGAATACTTCATTGCAAAATTTAAAGCGTCAGCAAATGATTGacaataatcattcattggaACTTCATGGTACTATTCCCGTTACGAGGAGTGCAAGTGAAACAGATGAATTTCATGATGGAACCTtagattcaattaatttcagttCTGACTCAGAGGAAAAttcgtttgaaaattttctgccattaaaaaaaaaatcaacaaattgtattgatgaagaaaaagataatatcgaaatgaaaaataattttcaagtagaaaatgaaaatgatattctTGAACAGAGTAAAATACATGATGATGAACATGAAGATACCAAAAGGTATTTAGCTCGATTGATGATTATCAAGCAAAAATGGGAAGcgatcaaattgaaaaaagatttattgCAAAAAGAACTTGATAATTCATACATAGGAGATAATATCGAAAAATTATCCAGAATATTAGGCGAGAAAGGAAATAATTTAGAAGAATTTCAGGATTATCTTAAGCAGAAAGATATCGTTATTACTCAATTAAAAGATCAagatataatatcattatatgaAAATCGTAATATTACATCAACGCACAATAAATTACCAgatttaattgaagaaaatccATCATTGGATAGTTCAGGTGATGAAAATCTTTTTGATTGTGATTATTGTCCACAAATATTTTCCACTCGTGGTACACTCGAAGTTCATTTGAAGAGCCACGActacaaaatatttgatttttgtgaGGATTGCGGTAgtgaatttacaaataatgaaGCAAAACAAACGCATGATATcacgtgtataaataaattattatgtagaTATTGTGATATCATGCTATATACAAAGGAAAGGAAACAGCAACATGAACAAAATCATTGTGATACCATTTTTGGTCAGATTTGCCACATTTGCGGTGACAGATTTAAATCTCAAGTTACTTTAAATCAGCATATAAAAACACAACATACGAGTTGGAAAACTGTACATGAATGTTCTAAATGCCCGGAGATATTTGCATCTAAACAAAAATTGACTAATCATGTAAAATTAGTTCATACACCATCACAAACttatttatgtgaaaaatGTGGTGGTGATTTCAAAAGCCTAGCATCACTTAGACATCATCGAATAGAAAATCATCAGTCAACTAGTAATGCACACGAAAGTCCAGTTTGTCATAAGCTCCTTCCATCTTATAATTTGTCATATACAATACAATGTCCTTATTGTGATAAAATGTTCAAAAATCCATCGACTTTAAAGCGACATCTAATATTACATGAAGATCATCAACGACAATACCTTTGCGATACTTGCGGTGAAGGCTTCAATCACCCTTACGAATTCCGCTTGCACATGAGAGTTCATGAAAAATCTGATGGTGCACTTGAAGAGTGTTCATGTCCAATATgcccaaaaaaatttccaaattattCAATGCTTGCACTTCATCGAAATTCAGTACACAGAGACGATAAACAATATACATGCCATATATGCAATAAGTCAATGCTGTCAAATAGATCTTTAGAGTGGCATATATCACACACTCATAATGAAACGTCAACGGGAATTGCACAGGACAATTTGGAAAATTcagttaaattgaaaaaacttTCCTGCAATCATTGTGATAAAACATTCAAGACAGCGAAGATTTTACGTGCACATATTAAAAACACGCACTCAGAAAGTAATCTAGTCAAGTGTTTGGAATGTGATTTGAGATTCATGTCAAAAGTCCGATTAAGACATCATATGATGATTGTTCATGATCAATTGGaagatacaataaaatatatgtgtgagATATGTGATACCaatttaaaaacaaagattCAATTGATGAAGCATCATCAGGATCAACATAGTGATGAGCGTCCGCTTCAGTGTCGCTATTGTGAATGGcgatgtaaacaaattagTGCTTTAGTTTACCATGAAAGAATTCATACCAATGAACAGCCTTATTCATGCCTTGTATGTGAACAacgttttaaatattttgacgATAAAAAAAAGCATGAAGAAAAACATGAAAGTCTCGACGGTGCAGGAATTGAAATGATTGTTGCTGAcggaaatattgaaaattcaaaaaatcaaGACGAGGAAGTTTCAGCATCAGAAAATGATCTATTAGAGCAGAAATATCAGGCCATTAATGATCATTTAACTGATCAACACGATGAATATGACAGTCAATATGATGGAAAACAGATTATCGAGTTTGAAGAAcaggaaataaataacgaaaatcAGCACCATATTCAAGAGTTAGATCAGGAGTATATGCAAGATATTCAACAAGAGATTGACGTAGAAGTTGATAACAAGACAGAGAACGAATATATTGACGAGATCGGCTTATATGATGAAGAGGAAAATTTGGAGCATCAACAATGGCAACATGAGAAAGAAacagaaacaaataatgattataaggaagaatataaacatgaatatgAATTACTTTCAGGGGAGGCATTCGAAGCTTCAGAAGTTATTATGAATATGGAAGATGAAACAGTTTATACTGAAGAAGTGATGACAGacaatattgaaaatacaGAAATGACAGCAAATCAAACGGTACAAACAGAAACAGTCGTGCATATGCAACAACAAAACCACAACAAGAAAATTCAAGCAGTTCCCTTTATGTTGTCGCTTAATGAATTGATTCGGCTGCAGAAATAA
Protein Sequence: MRDRWIEAMRCENFQPTQYTKICSKHFTPDSYVSNSPSSKKFLKKDAVPSIFDFPIQFIQRTTPRKLPESRLQPQNIEVENENEPHKHTVITNDKIFTEPLVKKKKASYVGNFKKRSYSTKNNRYQFMMNMVLTMKQKQIRKLQQYNRQLLKKVSNLNTSLQNLKRQQMIDNNHSLELHGTIPVTRSASETDEFHDGTLDSINFSSDSEENSFENFLPLKKKSTNCIDEEKDNIEMKNNFQVENENDILEQSKIHDDEHEDTKRYLARLMIIKQKWEAIKLKKDLLQKELDNSYIGDNIEKLSRILGEKGNNLEEFQDYLKQKDIVITQLKDQDIISLYENRNITSTHNKLPDLIEENPSLDSSGDENLFDCDYCPQIFSTRGTLEVHLKSHDYKIFDFCEDCGSEFTNNEAKQTHDITCINKLLCRYCDIMLYTKERKQQHEQNHCDTIFGQICHICGDRFKSQVTLNQHIKTQHTSWKTVHECSKCPEIFASKQKLTNHVKLVHTPSQTYLCEKCGGDFKSLASLRHHRIENHQSTSNAHESPVCHKLLPSYNLSYTIQCPYCDKMFKNPSTLKRHLILHEDHQRQYLCDTCGEGFNHPYEFRLHMRVHEKSDGALEECSCPICPKKFPNYSMLALHRNSVHRDDKQYTCHICNKSMLSNRSLEWHISHTHNETSTGIAQDNLENSVKLKKLSCNHCDKTFKTAKILRAHIKNTHSESNLVKCLECDLRFMSKVRLRHHMMIVHDQLEDTIKYMCEICDTNLKTKIQLMKHHQDQHSDERPLQCRYCEWRCKQISALVYHERIHTNEQPYSCLVCEQRFKYFDDKKKHEEKHESLDGAGIEMIVADGNIENSKNQDEEVSASENDLLEQKYQAINDHLTDQHDEYDSQYDGKQIIEFEEQEINNENQHHIQELDQEYMQDIQQEIDVEVDNKTENEYIDEIGLYDEEENLEHQQWQHEKETETNNDYKEEYKHEYELLSGEAFEASEVIMNMEDETVYTEEVMTDNIENTEMTANQTVQTETVVHMQQQNHNKKIQAVPFMLSLNELIRLQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01001398;
90% Identity: iTF_01001398;
80% Identity: iTF_01001398;