Mbra010237.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- -
- Assembly
- GCA_940306215.1
- Location
- OW675806.1:10075767-10078561[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.016 1.7 9.4 0.4 3 21 8 27 6 28 0.85 2 14 2 2e+02 2.9 0.1 2 20 34 52 33 54 0.91 3 14 2.8 2.9e+02 2.4 0.3 1 12 227 238 227 247 0.85 4 14 0.0079 0.81 10.4 1.3 1 21 357 377 357 378 0.94 5 14 3.1e-05 0.0031 18.0 0.2 2 23 383 404 382 404 0.98 6 14 4e-05 0.004 17.7 2.6 1 23 416 438 416 438 0.98 7 14 0.063 6.5 7.6 0.8 1 23 457 478 457 478 0.84 8 14 0.002 0.2 12.3 0.0 2 23 484 505 483 505 0.95 9 14 4e-05 0.0041 17.7 4.8 1 23 567 589 567 589 0.99 10 14 1.7e-06 0.00018 21.9 3.7 1 23 595 617 595 617 0.96 11 14 9.1e-05 0.0093 16.5 5.3 1 23 623 645 623 645 0.98 12 14 1.2e-06 0.00012 22.4 0.8 1 23 651 673 651 673 0.98 13 14 7.6e-05 0.0078 16.8 0.2 1 23 677 699 677 699 0.99 14 14 0.0052 0.53 11.0 0.1 1 23 707 729 707 729 0.95
Sequence Information
- Coding Sequence
- atggGTTCATCGATTCTCGTGTGTCCCATGTGTTGTGGGGAAACATTCAACAATTCACAATCgttgaaatatcatttattaagtatgacagataatttatattgtcccAGTTGTTCACAACGAACAGATTCAGTTACTGCATTAATTCAACATCTTGATAAATGTGGCCAAGAGCAACAAAATGGCTCCGAAGATTTTAAAGTTACTGACGATGAAGTATTAATGGATACCAATGTcgaagaaattaatgaaaatttcctGGCAACAGTCGACAATCGAGGAATTATGATTGTTAATGGTCCACGAACGATAGAAGTGGATGAacatggtGAAATAAAAGTAGTTGAGAGAAGGAATATATCTGAGAGCTTGCCAGAAGATGATATGTCATCTCGTGATTTAAATCAACATGACAGCAATAATTTGAGAATGAAACATTTTAAGTGTGAGAATGATAATTTAGAACAAGCACCGGTTATAAGTATTCCCGAATCTCTAATGAATGAGGAAAAAAGTGTCTTAGAATTGATACCAGATGATTCGACGAATTTCTTAGAGACAGaagagaatttaattgaattaaatcatcaCGATGAGGAAATTGGTGAAgaagaattaatgaaagttaAACAGGAGCTCTGTGAGGTAACCGGAGATGAGATTGATTCAACAACGGTTTACAATTGCAGCAGCTGTAAAATGAGCTTTAATTCCGTACTAGatcacataaatatgtatcatGATGATCAAGAAGTTGTGTTGGAAATGGCAAATGATACTGTAGAAGAACAATTACCACAATTATCACCTAAAGTCGAAATTCCAGGACCAGTAACGCGTTCACGACAACGACGACCAATGAATACTTTACGCACTGAAGAGTGTATTGACGCCGAGGGTCGTCTTTATACACGTAAAGTCGTACAAATTGAACGATTTTGGGATCCAAATACAGGAAATAATTCATCACAAAATACGATAAAACAAGCGccaatgattgaaaaatttttttcaaacgccGAAGGAATTAAAACACGAACGCGAAGTGAATCAACACCACAACGAATGTATCGTTGTAATCAGTGTTTCGAACAATTTCCACGTCTAGGCGAATTTAGAACTCATGTGTGTGTCAATGGTAGTAATCAATGTGACAATTGTGAACAGGCATTCGCAACAGCTAAAGCATTACAGTTACATATTAAAACTCATGATATTGAGGGAACAATTGACGGTCAAAAATCATTTACATGTAAAGTTTGCGGTACTGAATTTGCAACTCATAAAAGTTTACGTTTACATTCGCGTATGCATGCGCCAGTACGTGCACGACATGTAGACGCACCGGAAGGCACAAATAATTCACGTTTTACATGTCAGGAGTGTGGTAAAAGTTTATCGGTATTTTATCGTAAAGCACATATGTCATTGCACGCCGGTGATTCAGTAACGTGCGCAGTGTGTAATCGTAAATTCGATTCTGCTGACAGTTTAGCGATGCACGCGGCAGTTCATCCTGAATTGGGTGtgcaaaataatcaaaatttacaGGGGAATCAAacacaacagcaacagcagctaatacaattatcaattaatccaCCATCACCTTCACCAACTCCACCTGGGATAATTAATACCAGTGCCAATACAACAATTGCTAATGAAGTTTCGGATACAATTGATACGGCGAAACCTTATCAATGTCAGCATTGCGGTAGAAGATTTACAAGACCACATGAAAAAGTTAAACACGAGCGAATTCATACAGGAGAAAAACCTCATGCTtgtgaagTTTGCGGAAAGACATTTAGGGTTTCGTATTGTTTAACGTTACATATGAGAACTCATACGGGTGTGCGACCATATCAGTGTCAACATTGTGGCAAAAGATTTAAAGCATCATCGgtttataatcatcatttgTTAACACATGGTGATGAACGTGCTTACACGTGTCCGTATTGTCCAAAAACATTTAAGACTCGTGTCCAATTAGCGGGACATAAAAATAGTCATACAAAACCATTTCGTTGTACAGAATGTTCACGACCATTTGCATCGCTTTATGCAGCGCGTGCACATATACAAACGCACAAAAAggacaataatttaaaatttagttGTATTATTTGTGGTGCTTCGTATGGACGTGCTTTTGCATTGAAAGATCATTTGAAAGTGCATGATCCAGATATATTATTGCCGCCAGAGCCTGCACGTGAAGAGGAAGTTCATGAAGATTTTTTGCTTGAGGAAGAAGAAATTTTAGAAGAGGAATTAGTTAATTCAGGAATTCAAATTAATGTTGGTGATCCTGAATaa
- Protein Sequence
- MGSSILVCPMCCGETFNNSQSLKYHLLSMTDNLYCPSCSQRTDSVTALIQHLDKCGQEQQNGSEDFKVTDDEVLMDTNVEEINENFLATVDNRGIMIVNGPRTIEVDEHGEIKVVERRNISESLPEDDMSSRDLNQHDSNNLRMKHFKCENDNLEQAPVISIPESLMNEEKSVLELIPDDSTNFLETEENLIELNHHDEEIGEEELMKVKQELCEVTGDEIDSTTVYNCSSCKMSFNSVLDHINMYHDDQEVVLEMANDTVEEQLPQLSPKVEIPGPVTRSRQRRPMNTLRTEECIDAEGRLYTRKVVQIERFWDPNTGNNSSQNTIKQAPMIEKFFSNAEGIKTRTRSESTPQRMYRCNQCFEQFPRLGEFRTHVCVNGSNQCDNCEQAFATAKALQLHIKTHDIEGTIDGQKSFTCKVCGTEFATHKSLRLHSRMHAPVRARHVDAPEGTNNSRFTCQECGKSLSVFYRKAHMSLHAGDSVTCAVCNRKFDSADSLAMHAAVHPELGVQNNQNLQGNQTQQQQQLIQLSINPPSPSPTPPGIINTSANTTIANEVSDTIDTAKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYQCQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCIICGASYGRAFALKDHLKVHDPDILLPPEPAREEEVHEDFLLEEEEILEEELVNSGIQINVGDPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01000765;
- 90% Identity
- iTF_01000765;
- 80% Identity
- -