Mbra001782.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- -
- Assembly
- GCA_940306215.1
- Location
- OW675801.1:16399767-16403137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.75 77 4.2 1.1 1 23 466 488 466 488 0.84 2 15 0.0018 0.19 12.4 1.8 2 23 499 521 499 521 0.94 3 15 8.8e-05 0.009 16.6 0.1 1 23 528 550 528 550 0.98 4 15 4.6e-06 0.00047 20.6 2.6 1 23 556 578 556 578 0.96 5 15 0.00023 0.023 15.3 4.3 1 23 587 609 587 609 0.97 6 15 3.5e-06 0.00036 21.0 0.8 1 23 615 637 615 637 0.98 7 15 2.1e-06 0.00022 21.7 0.1 1 23 642 664 642 664 0.98 8 15 0.032 3.3 8.5 4.5 1 23 671 693 671 693 0.98 9 15 0.0014 0.14 12.8 0.2 2 23 713 734 712 734 0.97 10 15 0.00024 0.025 15.2 1.0 2 23 742 764 741 764 0.96 11 15 0.0051 0.52 11.0 0.2 1 23 770 792 770 792 0.98 12 15 0.0034 0.35 11.6 3.5 1 23 798 820 798 820 0.98 13 15 5e-07 5.1e-05 23.6 0.5 1 23 826 848 826 848 0.98 14 15 4.3e-06 0.00044 20.7 0.8 1 23 854 876 854 876 0.97 15 15 0.0037 0.37 11.5 0.7 2 23 883 905 882 905 0.93
Sequence Information
- Coding Sequence
- atgaaaattatttgtgcatCACCATCATGCAAATATTCTGATGAAAATGTGGACTCGAgcgatattattttcatcagtttTCCTAACGATGACACGTCGACAATTTGGGCACACAATTGTGGTCGGCCAGATCTTATGATTAAATCAAATGAAGAATtacatatgaattattatgtttGTTCAAATCATATTGAAGATCGTTATTATTTGAGTAAAAcaaatcatatatttattgcacaaGGTGCAATACCAACATTATTCCAATCATCAGATAATCAATCACCAGAACATTATACTTCATTAAAAGATCAATATTCAACTTCTGATCATGTTATAAATGCTCTACAATTAAATGATTGTATTGATACGGTGAATAGTAATTGTCCGtcgaattttattgataatacaaGTTCTGATTATCAAACGACAATTTATAATGCTGAATTGCATAATCTAaacaatgatattaataatgatgctGACAAAGATGAAGATCAAcacattaataatgataatagttcgaatttttgtaatattaatatgaatatagatCAATTAAATGATATGACAATACGATTTACAAATGTATGTCGCATTTGTGGACAATCAATGGATGATGGAATTGATATTATTGGTGAACGTGGTATTCAAACTAAATTAAAAGACAAAATCCATTTGCATTtaccaatattcattgatattaatgatgatgatctTTTGCCATTGAAAGTATGCTTGGATTGTTGTGagaaattagaaatatttcattcatttgttgttACATGTTTACAAACAGATATAagattaagaaaatatttcaatcttcCTAGCAAgTACAATCATGAGGATAAATTTCGTGAAATAATATCCGCCAATGAGTTGGAAGTAAATAACGAAATGTGTACAGGTACTTCAACTATTGAACAGTCAACTATTATTGCTGATAAACCAGAAGATTCAACTCCAGTGTCTGAAGATTTGAATGTAGaacttgataaaaattcattcacaaatgaaatatcaaatgatcAATCAACCATACATTATTGTGAGAATAATTCAACACTATCGGCATCATCAAAAATTGAAAGTCGCTTAAGATTTATTACACACACGGATTTAAACAATCTGATATTGCAACCATTACAatctttaaataattcaaatattaaaaatcaatcgTCTGATTCATTAGTCGGTGAAAATATTGAACGTAATATTATTAGAGAAAATGAATCACTCAATTGTTTAGAGAGTACGAATAACGATGATGAAACATTGACATTGGTGGAAAATAATGCTCAAATAATTTGTGCAATAAGTGATCAATCAATCTTTGAAACCAATAAATCCACAGAGGATGATGAAACTGTACATGAGGAGcaagtgaataaatttaattgtaaaaaatgtgttgaaacatttgataaatatgaaGAGTTGCTGTTTCATGAACAATTACATccggaaaataatattacacagCAAAAACGACGATGCGGACACTGTTCACTTGAATTCATTAATCGCAAACAATTGCAATCCCATATTTTAGAAAAACATGCTGGTCaacaaatgttatttaaatgtggTTTGTGCGATAAAGTTTATGAAAAATGGTCAAGTTTAGATGTCCATGAGGCTACACATCGACAGGATAAACCATACTTATGTGATTTATGTGGAAAGAGCTTTAAACATTCCAATAATTTACGCGGTCATAAGAGAATTCACCTagatataacaaaaaaaaaacgtcatGTTTgtgaaatttgtaaaaatgcaTTCAGATCaagATTTCATCTGCGTGAACACATGAATCAACATAATGGCAATAAACCATATATATGTGAACAATGTGGAAAAGCATTTTCAAAACGAATACAATTACGACAGCATCGTTTATCTCatggattaaataaatacgcATGTCCCATTTGTGGAGTTGCATTTAATCGTAGAGGAAATATGAATACACATTTAAAAAGACATGACAATAATGAAGGAATGTATACGTGTAGCgTTTGTTCTTCTCGCTGTAAATCCAtgagtgaattaaaaatgcaTCGCAAACAACATTCGGAAAATGATATAATGGAGAGTATTAAAAGACGATGTAGCGATAAAACAATTTGGGAATGTAAAAGTTGTAGTAGAATATTTCCAAAACGTGCGGCATTATTGAGCCATGAACGTACgcataataatgaacaaatggGAATTGAATGTGATAAGTGTGGTAAAAAATTagcgaataaaaattcattgaaatatcatACAAAATCAATGCACACTACAGAACGACCGTACGTTTGTCAATTTTGTGATGAATCATATATTTCAAAAGAAGCACGATTAATACATGAAAGAATACATACTGGTGAACGAccatatatttgtaaattgtgCAATATGCAGTATCGATGCTCGAGTAATCTTAGTCAACACATGAAAGTCCATTCAAAAATACGACCATACGTATGTCAATATTGTGACAAATCATTTACTCGCAAAGGTGCAATGACTGTTCATGAACGAATTCATACGGGCATTAAACCATTTGCATGTGATgtatgtgataaaaaattttcgcaaaaaaatgatatgataAAACATGCAAAAACACATGATGGTAAATTGTCACTGCGTTGCGAAGAgtgtaatgaaatattttcatctaagACTGAAATTCGCGAGCACTTCCAGAATTTTCATAAACCAATAATCATTAATCGTTctgttattaataatgatattaaacaGACAATagtttcataa
- Protein Sequence
- MKIICASPSCKYSDENVDSSDIIFISFPNDDTSTIWAHNCGRPDLMIKSNEELHMNYYVCSNHIEDRYYLSKTNHIFIAQGAIPTLFQSSDNQSPEHYTSLKDQYSTSDHVINALQLNDCIDTVNSNCPSNFIDNTSSDYQTTIYNAELHNLNNDINNDADKDEDQHINNDNSSNFCNINMNIDQLNDMTIRFTNVCRICGQSMDDGIDIIGERGIQTKLKDKIHLHLPIFIDINDDDLLPLKVCLDCCEKLEIFHSFVVTCLQTDIRLRKYFNLPSKYNHEDKFREIISANELEVNNEMCTGTSTIEQSTIIADKPEDSTPVSEDLNVELDKNSFTNEISNDQSTIHYCENNSTLSASSKIESRLRFITHTDLNNLILQPLQSLNNSNIKNQSSDSLVGENIERNIIRENESLNCLESTNNDDETLTLVENNAQIICAISDQSIFETNKSTEDDETVHEEQVNKFNCKKCVETFDKYEELLFHEQLHPENNITQQKRRCGHCSLEFINRKQLQSHILEKHAGQQMLFKCGLCDKVYEKWSSLDVHEATHRQDKPYLCDLCGKSFKHSNNLRGHKRIHLDITKKKRHVCEICKNAFRSRFHLREHMNQHNGNKPYICEQCGKAFSKRIQLRQHRLSHGLNKYACPICGVAFNRRGNMNTHLKRHDNNEGMYTCSVCSSRCKSMSELKMHRKQHSENDIMESIKRRCSDKTIWECKSCSRIFPKRAALLSHERTHNNEQMGIECDKCGKKLANKNSLKYHTKSMHTTERPYVCQFCDESYISKEARLIHERIHTGERPYICKLCNMQYRCSSNLSQHMKVHSKIRPYVCQYCDKSFTRKGAMTVHERIHTGIKPFACDVCDKKFSQKNDMIKHAKTHDGKLSLRCEECNEIFSSKTEIREHFQNFHKPIIINRSVINNDIKQTIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01002263;
- 90% Identity
- iTF_01000605;
- 80% Identity
- -