Basic Information

Insect: Microctonus brassicae
Gene Symbol: -
Assembly: GCA_940306215.1
Location: OW675807.1:1407512-1410260[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.021 2.2 9.1 0.5 2 23 157 178 156 178 0.97

2 12 0.0011 0.11 13.1 0.3 1 23 188 210 188 210 0.97

3 12 0.68 69 4.3 0.1 2 13 218 229 217 237 0.83

4 12 1.8e-06 0.00018 21.9 0.3 1 23 303 325 303 325 0.97

5 12 3.9e-06 0.0004 20.8 1.6 1 23 331 353 331 353 0.95

6 12 2.7e-05 0.0028 18.2 0.6 1 23 359 381 359 381 0.98

7 12 1.7e-05 0.0017 18.8 7.2 1 23 387 409 387 409 0.97

8 12 6.6e-08 6.7e-06 26.4 0.6 1 23 414 436 414 436 0.97

9 12 0.00042 0.043 14.4 0.2 1 23 442 464 442 464 0.97

10 12 1.4e-07 1.4e-05 25.4 3.5 1 23 470 492 470 492 0.97

11 12 8.3e-07 8.4e-05 22.9 0.9 1 23 498 520 498 520 0.98

12 12 9.4e-07 9.6e-05 22.8 0.6 1 23 526 548 526 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.021	2.2	9.1	0.5	2	23	157	178	156	178	0.97
2	12	0.0011	0.11	13.1	0.3	1	23	188	210	188	210	0.97
3	12	0.68	69	4.3	0.1	2	13	218	229	217	237	0.83
4	12	1.8e-06	0.00018	21.9	0.3	1	23	303	325	303	325	0.97
5	12	3.9e-06	0.0004	20.8	1.6	1	23	331	353	331	353	0.95
6	12	2.7e-05	0.0028	18.2	0.6	1	23	359	381	359	381	0.98
7	12	1.7e-05	0.0017	18.8	7.2	1	23	387	409	387	409	0.97
8	12	6.6e-08	6.7e-06	26.4	0.6	1	23	414	436	414	436	0.97
9	12	0.00042	0.043	14.4	0.2	1	23	442	464	442	464	0.97
10	12	1.4e-07	1.4e-05	25.4	3.5	1	23	470	492	470	492	0.97
11	12	8.3e-07	8.4e-05	22.9	0.9	1	23	498	520	498	520	0.98
12	12	9.4e-07	9.6e-05	22.8	0.6	1	23	526	548	526	548	0.98

Sequence Information

Coding Sequence: ATGGATGAAAATACTGCTAATGTTGTATTAAAAGGTGAACCTGGTGATAGATTTACTTCAACAACATACATGGAAGATATTTGTTCAGGAACATTCGATAAAGTCTTCTTGCCAATAGAAGGTCATGAGGTGGACTTTGCTGATGAAATGGTTAAACTTGAGCTGGAGGGTCAAACGAGCTCTCACCAAAATTGGGTAGGCCAGATTgcaaatacaaattcaaatatcTGTGATCGTTCTAGTGGTATACGttcacattttattcattttgaggATCGCAATGGTGTTGACGATAGTGGGAGTGCAATAACAAACGTAGACAAGCTAAAAAATCGttatgaaaaagataaaaatacatacaagtGTCAGGGTAAATCAAATGACATTATTGTTCCAGCAGCAAGTCTTGAAGACGCTTTAAAACATCAAGGATATCCTAATATTAATCAGCCAAAGTTTTATAAGATCCAGTGCTCAATTTGTAAAAAGTGGTTTTTAAATAATGACTCAATGATTACTCATTTGCGTTCGCATTGCAATAGTATTGCAGGACGAGAGGGTTTTCCTTGTCAAATTTGCCAACAAATATATCCTGATGAAACAAGTCTTCATGATCATATGGTGAGTCATATGGAAACAAATTCGCCATTAGAGTGTACAGTTTGTGAGAGAAAATTTGCATACAAGTGGCGTCCAAGAAGTCATATTCAAGCATTTATGTCGCACGGATGTTTAGATATTTGTAATTGCTGCGAGAACGAGTCCACTGGTGGGCAGACAGTTAGAAGAACTGACATTGATAATCGATTGCATTGTCAGGCGTGCAAAATGAATGACGCAAAACCCAATAAATCATACAGGCCAAATGTTAATATTCACGTACCAACAAATGCAGGTGTTAAACCATTCAGATGTAATCTTTGTCAACGTTCATTTGCTCAACGGGCGGcgttaaataatcatatgttGGCGCATAGCGGTGAAAAGCCACATGCATGCAATATCTGTGAAAAAACATATAAACGCAAGTCCGAGTTGGTGAGACACTCAATGGTACATACTGGCGAACGTCCATATGAATGTAAAGAATGCTTAATGACATTTCGGGAAAAGgctaaattaaattcacacaTGCTTGTTCATACCGGTGAGAAGCCACACGAGTGTCATATTTGTCACAAAGCATGCGCAAGAAAATCTGATCTTAATAGCCATATGTTGTCACACACTGGCGGTCAATATGACTGTAAagtatgtgaaaaaatattcactcgTAAATCCGATCTCAATCGACATATTCTCATTCACACAGGTGAAAAGCCATTTGCGTGCGATCTTTGTGAAATGGCGTTTCGTGAAAAAACACGATTAAACTCTCACATGTTGGTTCACACAGGTGATAAAAGACACACTTGTCATATATGTGGAAAAGGATTTCGGGAAAAATCTAGTTTAAGAAAACATATGATTATTCATACCGGAGATAGGCCTTAtgaatgttatatatgtaagaAAGCCTTCACTCAAAAGACAACATTGAATTCTCATATTTTAGTGCACACTGGCGATCGACCTTATGAGTGTAGCACATGTCCTAAAACATTTAAAGAGCGATCTGCATTGAGAAAGCATTGGCTAGTGCATCTCAATGAACGGGGCCATGACACTCCAATGTCTACAAAAAAgtataatcataataaatcaCTACTCGGTGTGCCGCACACTGCCACCGATAATACTTCCTCAtag
Protein Sequence: MDENTANVVLKGEPGDRFTSTTYMEDICSGTFDKVFLPIEGHEVDFADEMVKLELEGQTSSHQNWVGQIANTNSNICDRSSGIRSHFIHFEDRNGVDDSGSAITNVDKLKNRYEKDKNTYKCQGKSNDIIVPAASLEDALKHQGYPNINQPKFYKIQCSICKKWFLNNDSMITHLRSHCNSIAGREGFPCQICQQIYPDETSLHDHMVSHMETNSPLECTVCERKFAYKWRPRSHIQAFMSHGCLDICNCCENESTGGQTVRRTDIDNRLHCQACKMNDAKPNKSYRPNVNIHVPTNAGVKPFRCNLCQRSFAQRAALNNHMLAHSGEKPHACNICEKTYKRKSELVRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICHKACARKSDLNSHMLSHTGGQYDCKVCEKIFTRKSDLNRHILIHTGEKPFACDLCEMAFREKTRLNSHMLVHTGDKRHTCHICGKGFREKSSLRKHMIIHTGDRPYECYICKKAFTQKTTLNSHILVHTGDRPYECSTCPKTFKERSALRKHWLVHLNERGHDTPMSTKKYNHNKSLLGVPHTATDNTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01560617;
90% Identity: iTF_01000750; iTF_01002259;
80% Identity: -