Basic Information

Insect: Microctonus brassicae
Gene Symbol: SCRT1
Assembly: GCA_940306215.1
Location: OW675811.1:2339003-2341571[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00043 0.044 14.4 0.2 1 23 258 280 258 280 0.94

2 12 2.2e-05 0.0023 18.5 1.2 1 23 288 310 288 310 0.98

3 12 2.2e-05 0.0022 18.5 0.1 2 23 318 339 317 339 0.97

4 12 8.1e-06 0.00083 19.8 1.0 1 23 345 367 345 367 0.98

5 12 8.5e-05 0.0087 16.6 1.9 1 23 374 396 374 396 0.98

6 12 3.6e-06 0.00037 20.9 0.6 1 23 402 424 402 424 0.96

7 12 2.8e-06 0.00029 21.3 0.4 1 23 430 452 430 452 0.99

8 12 3.2e-07 3.3e-05 24.2 0.7 1 23 458 481 458 481 0.96

9 12 2.7e-06 0.00028 21.3 0.5 1 23 487 510 487 510 0.96

10 12 4.1e-06 0.00042 20.7 2.8 1 23 516 538 516 538 0.99

11 12 6.7e-05 0.0068 16.9 0.4 1 23 544 566 544 566 0.94

12 12 9.5e-05 0.0097 16.5 0.1 1 23 572 596 572 596 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00043	0.044	14.4	0.2	1	23	258	280	258	280	0.94
2	12	2.2e-05	0.0023	18.5	1.2	1	23	288	310	288	310	0.98
3	12	2.2e-05	0.0022	18.5	0.1	2	23	318	339	317	339	0.97
4	12	8.1e-06	0.00083	19.8	1.0	1	23	345	367	345	367	0.98
5	12	8.5e-05	0.0087	16.6	1.9	1	23	374	396	374	396	0.98
6	12	3.6e-06	0.00037	20.9	0.6	1	23	402	424	402	424	0.96
7	12	2.8e-06	0.00029	21.3	0.4	1	23	430	452	430	452	0.99
8	12	3.2e-07	3.3e-05	24.2	0.7	1	23	458	481	458	481	0.96
9	12	2.7e-06	0.00028	21.3	0.5	1	23	487	510	487	510	0.96
10	12	4.1e-06	0.00042	20.7	2.8	1	23	516	538	516	538	0.99
11	12	6.7e-05	0.0068	16.9	0.4	1	23	544	566	544	566	0.94
12	12	9.5e-05	0.0097	16.5	0.1	1	23	572	596	572	596	0.94

Sequence Information

Coding Sequence: ATGAATGAACCGCCGAAAGATTTGTCTTATTGTTTAATATGCAACAATAAAACATCTTCAAGAAATACTATTCAGATATTTGATGcattattgaatgatgatacgggaaaaaatcttgctgataCAATATGTGGAATTTTAGATACGgaaatcaatgaatataatgttCATTCACGAGTAATTTGTAggaaatgttataaattaattacagaaTTTGAAGAAATTGAATCTAGAATGAGTGATATTCGACGAgagatttttaataattacaaatcgACAATTGAAAAAGTTAAAACCgtttttcaaattgatgaagAGTGCAATGATCATGATTATCTTGATACAGGAGATAGTCAATGTGAAATTCGAGATACTTTTGTAACTGAGGAATCTGGagataatgatgattatttaataaatgctaAAGATGAACCAATTGAAGAGCATTTAGATGAATATTTACAGGAAGAAATCCATAATGAAGAAGCTGAACAGCCGGAATTGGCTGAAGAATATGTTGACGATCCACTTGAACGCAGAATAGATAATATTGAACAACAGCCAATAAGAACAGATAATAAATTGGACGAGACAAAAAAGcgtgaatcaaaaaaaatgaaattacttACTAAAGAGGAATTGTTTGATCCAATTGTCGAGAGAGAggatacaatttattattgtctattgTGTCcggatgatgataataaaatggcCGGTGAtgcaaaacaaatgattgcacacgttaaaaatattcacgataCACGTTTGTACATATGCGATATATGTGGTATGGATTTTAGAAAAAGGAATGAATTATCGATGCATTTAGATGATCATGTTGCACGAGAGGAGGGCGATTTTCAATGTGAAGTTTGCAATAGAATATTCAGTAATTTACGTTTGTTTCGTATTCATAAACGAATACATTATCCTCAAATTAAGTCATGGCCATGTGAAATATGCGGCAAACGTTAtagttcaaaaaatttattggatgaACATGTTAATACTCACAATGGCGTACGTCCGTATATTTGTCAAACATGTGGCAAAGATTTTGcatcaaaatatacatacaaagcGCATGCAAAAACTCATGAAGTTCGTCCACGTCCATTTGAATGTTTGCAAtgcaataaaacatttttaagccaacaaaatttaaatcaacatGAACGAACGCATCTTGGCGTTAAAGAATACGTTTGTCATCAATGTGGTAAAGCATTTGGTTCACCTCATAATTTAGAAGTTCATAATATTGTTCATACTGGATATAAACCGTATAAATGTCGTATGTGCGGTAAAGCTTTTGCAAGAAAAGCCGAAATAAGAGATCATGAGAGAACTCATACAGGTGAAAAACCGTATCAATGCGAATTGTGTGGCGCTACATTTAGTCAACGTTCAAATTTACAATCGCATAAACGCGCAACGCATTACGATGATAAACGTTACAAGTGCGATGATTGCGGCAAAGGATTCAAACGACGACGATTATTGGATTATCATATTAAAGCAGCGCACACTGGCGAACGGCCTTATAAATGTGAAACGTGCACCGCTACATTTGTTTATCCAGAGCATTTTAAAAAACATATGCGTATTCATACTGGTGAAAAGCCATATTTATGTGAAGTTTGTGGCAAAGCATTTAATAGTAGAGACAATCGAAATGCACATAGATTTATTCATAGTGATAAAAAACCATATGAATGTTTGGATTGTGGAATGGGTTTTATGCGAAAGCCATTGTTGTATGCGCATATGCAAACGCAAGGGCATTTAAATGATACTATTGTTGTTAATCAGCCGAGATTAACAAAAGACGAAGAAGTTTTAACTATTCCTGATGGTAATATACAATTGATGATGGCTGATGATGAAACAGAGCCgTTGGGCGATACGCAATTGTATGTAACTGAATTGAAGGATCATATGATAATCCAACAAGATGACGAGCATGTTTATCAGGATGAAAGTGTTTTAGATATTCCAactgaagaaaatattgatgaacaGGTTGAGCATATGGTTGTTGGTAATcagatgGCATTTGGTGGCGGAGAAGTTATAGAGTGTAAAccaaataatgaagaaaatgaggaTGCATTTAATTATACTAATGGCGAGGATGAAACAATTGTTTTACCAGCAAATGCAGAATATAAAGATATTATCGGTGACAGTAAGAATCAAGTGAGATTGGTTCAAATTAGAATTCCTTCGAGCACTGGAGCTGATGCTAAAGGATGGTTGAGCCTTGTACAACAAcacacataa
Protein Sequence: MNEPPKDLSYCLICNNKTSSRNTIQIFDALLNDDTGKNLADTICGILDTEINEYNVHSRVICRKCYKLITEFEEIESRMSDIRREIFNNYKSTIEKVKTVFQIDEECNDHDYLDTGDSQCEIRDTFVTEESGDNDDYLINAKDEPIEEHLDEYLQEEIHNEEAEQPELAEEYVDDPLERRIDNIEQQPIRTDNKLDETKKRESKKMKLLTKEELFDPIVEREDTIYYCLLCPDDDNKMAGDAKQMIAHVKNIHDTRLYICDICGMDFRKRNELSMHLDDHVAREEGDFQCEVCNRIFSNLRLFRIHKRIHYPQIKSWPCEICGKRYSSKNLLDEHVNTHNGVRPYICQTCGKDFASKYTYKAHAKTHEVRPRPFECLQCNKTFLSQQNLNQHERTHLGVKEYVCHQCGKAFGSPHNLEVHNIVHTGYKPYKCRMCGKAFARKAEIRDHERTHTGEKPYQCELCGATFSQRSNLQSHKRATHYDDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLDCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTKDEEVLTIPDGNIQLMMADDETEPLGDTQLYVTELKDHMIIQQDDEHVYQDESVLDIPTEENIDEQVEHMVVGNQMAFGGGEVIECKPNNEENEDAFNYTNGEDETIVLPANAEYKDIIGDSKNQVRLVQIRIPSSTGADAKGWLSLVQQHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01560621;
90% Identity: iTF_01000751;
80% Identity: -