Mbra001905.2
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- -
- Assembly
- GCA_940306215.1
- Location
- OW675802.1:415528-418354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.011 1.1 10.0 1.5 1 23 10 32 10 32 0.97 2 14 0.018 1.9 9.3 1.1 2 23 39 63 38 64 0.93 3 14 8.7e-06 0.00089 19.7 0.4 1 23 70 93 70 93 0.98 4 14 5.9e-06 0.0006 20.3 0.4 3 23 101 121 100 121 0.98 5 14 8.8e-05 0.009 16.6 3.8 3 23 129 149 127 149 0.96 6 14 3.6e-07 3.7e-05 24.1 0.4 1 23 155 177 155 177 0.98 7 14 0.001 0.1 13.2 1.2 1 23 208 230 208 230 0.97 8 14 0.017 1.8 9.4 0.8 2 19 238 255 237 256 0.97 9 14 2.1e-07 2.2e-05 24.8 0.5 1 23 673 695 673 695 0.96 10 14 2e-05 0.0021 18.6 0.3 1 23 702 725 702 725 0.96 11 14 4.1e-05 0.0042 17.6 0.1 1 23 733 756 733 756 0.97 12 14 9.5e-06 0.00097 19.6 6.2 1 23 762 784 762 784 0.98 13 14 0.00031 0.031 14.9 4.7 1 23 790 812 790 812 0.97 14 14 6.7e-08 6.9e-06 26.4 1.1 1 23 818 840 818 840 0.98
Sequence Information
- Coding Sequence
- ATGCTCAGTGAGAATAATGCAAGTGAATTTATTTGCTCTGTATGtggaaataaattccaaaatgaACATCAGTACTTTGGGCATTTGCAAATTCACAGTGGTGAAATAAGATGGAGATGTACACAATGTGACAATCCCAATATGTCATTTGAATCGCAATCAAAATTGAAGGctcatgaaaatttacatCACAATTTAGTGAAACCATTCAAATGTTCCGAATGTGATATGGTATTTGATCGAGCATCACAACTGGATTATCATACAAGAAGTGTGCATTTAAATGAAAAGTCTCAATTATGTCAAATATGTGGAAAAGGATTTTTCAGAAAAGCGGACTTGAAAACACATTTAAATGTACATCTTGGTACTAATCAATCAATTTGCGAAATTTGTGGACGCAAATTTAATCATGTCTCGAATTTAATTAGACATTGCAGAACGCATGCAGgAATAAAACCATATCCTTGCTCCATTTGCGGCAAGAGATTTACACAAATAAGTTCTCTTGCTcgtcataaaaatattcatcaaaggactgtgaaaaattcaataaattcttcaatagAACAAGTTGTAGATAAAGCTGACAgtgatgggaaaaaaattataaagcgTCGtcattattgtaaaatatgcGGTGAAAGTTTCCAGTTTATTGTACTTTTACGACAGCACGAAAAAATCCatgtaaataaaacgaaatcaATTCAATGTGAGAATTGTTTTGAGATATTCCAAACTCAGGATTTATTACAACGACATTGTTGCAACGCAGtatcaataaatcaacattgtgatagcatattaaaaaatattgtgaatgaagaaaaattgattattgataaGAGTTacgaaaaaaatgtaattgaagaaaaaatggaaaattcattagaaaaaattatttattcaaattcggATCAGTCAAACGACAATAGTGAATTACAATCGCATGAAATGCTTAACCCTACATTGCGTGAATTAACACAAAAAATTAACGTGATTGGAGTCGATAATGATCGGGATGAGAGCATAAATATTTCTGATATTTTGGATCCGTATAATTGTGATGGTATTGAATTTGCAAATTcagattttataaataaagaagagtGCAACGGAACATCCAAAAGATTTATGCCATCAGAGGTAGAATTTACTAGAGAATCGCACAATAAACGTTTGCATATTGAGGGcagtcaattatttattgaagtttGTGAACCGGATTATTTGAAAAGTTTAGGATTGCATACGTTGGAATTTCAGGAAAATGTTACGTTCTTACAAGATAACTTTAATCTATCTGGCATAGATAGATTAGACACATTTGCAAAtgcaattgataattttaatattgaatcgccaaaaaaatatcaaggaCTTGAAAGTAATGGATCGACATTACGTTTAGTCCAAACACATAGTGGCGaacaattttatgaattgGCTATTAATcatattgtagaaaaaaatttagagcAATCTGGGAATGCCATAAATCCATCAGATGAATCTGTGGAGCTTTGTcctatcaatgaaaaaattgataaccaATGGGATTTACAATCATCACGCACTCGAACTGATTTGATTGATTTCACTAATCAAGCAAATCGCGAAAGAGATAAAGGCGAAACCTTTATTAATTTAGAATTAGATCAATCGAAAAATGTACATTTGACCTTGATGGATGATTTTCAAACGCATTCGATAGAGTCAAATCTTGGTGCTTTGAATAATCATAGAGAACTAACTAATAATACCAATGAACACACACAAACTCCCATGGTGCGTTTAGTGCAAAATGAGGAAGGAGaacaattttttgaattaattcgcGATTCAATAGACTTTGATGACAATAACGAAATGAAGATAGTACAAGATAAAGATTttccaaatgaaaattatggtGATtcgcaaaataatattaatgatatatctTCAAAGAAATGTACGAAGCAAAAAGTACCGCGCGAAAAATCGTCGCGTATAAATGAgtcgaaagaaaaatatgagtgtaacgtttgtaataaaaaattctcaactgCTTCGAACTTAAAGCAACATGTAggaattcattttttagaTCAACAAAAGTTTCAATGCAAAGAATGTGGAATTTCATTTGCATGGAAgtcaacattaaataaacatattgcCAGTAATCATCGGCCTGATGGTCCACAGAAATTTGTGTGTGAAATTTGCCCTAAAGTTTATAATACATTGTCTCAAGTGAATgAGCATGTTAAACGAGATCATCTTAAGGAACGTAATCATGTGTGTTCCGAATGtggaaaatgttttttcaaaagatttgatttaaaatcacaCATACGAACTCATACAAATGAACGACCGTACATTTGTCAAGCTTGTGGAAAAAGTTTTCATCATCAGAGTCATATAATAAGACATGAACGTATTCATTCTGGTGAGCGCCcatattcatgcaattattgtgaaaaaactTTCACCCAACCGGGTTCATTGAAAGCTCATCAACAACGACACCGAGATATAACTAAAGTTGATATATTGGATTATCGAATTGATGAAGATGATCCAATCATTCCAAATGCATCTTAG
- Protein Sequence
- MLSENNASEFICSVCGNKFQNEHQYFGHLQIHSGEIRWRCTQCDNPNMSFESQSKLKAHENLHHNLVKPFKCSECDMVFDRASQLDYHTRSVHLNEKSQLCQICGKGFFRKADLKTHLNVHLGTNQSICEICGRKFNHVSNLIRHCRTHAGIKPYPCSICGKRFTQISSLARHKNIHQRTVKNSINSSIEQVVDKADSDGKKIIKRRHYCKICGESFQFIVLLRQHEKIHVNKTKSIQCENCFEIFQTQDLLQRHCCNAVSINQHCDSILKNIVNEEKLIIDKSYEKNVIEEKMENSLEKIIYSNSDQSNDNSELQSHEMLNPTLRELTQKINVIGVDNDRDESINISDILDPYNCDGIEFANSDFINKEECNGTSKRFMPSEVEFTRESHNKRLHIEGSQLFIEVCEPDYLKSLGLHTLEFQENVTFLQDNFNLSGIDRLDTFANAIDNFNIESPKKYQGLESNGSTLRLVQTHSGEQFYELAINHIVEKNLEQSGNAINPSDESVELCPINEKIDNQWDLQSSRTRTDLIDFTNQANRERDKGETFINLELDQSKNVHLTLMDDFQTHSIESNLGALNNHRELTNNTNEHTQTPMVRLVQNEEGEQFFELIRDSIDFDDNNEMKIVQDKDFPNENYGDSQNNINDISSKKCTKQKVPREKSSRINESKEKYECNVCNKKFSTASNLKQHVGIHFLDQQKFQCKECGISFAWKSTLNKHIASNHRPDGPQKFVCEICPKVYNTLSQVNEHVKRDHLKERNHVCSECGKCFFKRFDLKSHIRTHTNERPYICQACGKSFHHQSHIIRHERIHSGERPYSCNYCEKTFTQPGSLKAHQQRHRDITKVDILDYRIDEDDPIIPNAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01002255;
- 90% Identity
- iTF_01000747;
- 80% Identity
- -