Mbra001685.1
Basic Information
- Insect
- Microctonus brassicae
- Gene Symbol
- ZBTB41
- Assembly
- GCA_940306215.1
- Location
- OW675801.1:15255326-15258156[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.2e-05 0.0033 17.9 0.6 1 23 52 74 52 74 0.97 2 22 4.2e-07 4.3e-05 23.9 1.2 1 23 80 102 80 102 0.99 3 22 1.8e-06 0.00019 21.8 0.1 1 23 108 130 108 130 0.98 4 22 0.0023 0.24 12.1 3.3 2 23 137 159 134 159 0.91 5 22 2.6e-05 0.0027 18.2 5.7 1 23 164 186 164 186 0.97 6 22 1.4e-05 0.0014 19.1 1.5 1 23 195 217 195 217 0.98 7 22 9.1e-07 9.3e-05 22.8 1.5 1 23 223 245 223 245 0.97 8 22 6.1e-05 0.0062 17.1 1.3 2 23 252 273 251 273 0.96 9 22 4.3e-06 0.00044 20.7 3.3 1 23 279 301 279 301 0.98 10 22 7.7e-06 0.00078 19.9 0.6 1 23 307 329 307 329 0.98 11 22 0.019 2 9.2 2.3 1 23 391 413 391 413 0.96 12 22 1.5e-07 1.6e-05 25.2 1.4 2 23 420 441 420 441 0.98 13 22 1.7e-06 0.00017 22.0 4.2 2 23 471 492 470 492 0.97 14 22 0.00021 0.022 15.4 4.8 2 23 498 519 497 519 0.97 15 22 0.0026 0.26 11.9 0.1 1 23 524 546 524 546 0.97 16 22 1.5e-05 0.0015 19.0 2.6 1 23 554 576 554 576 0.98 17 22 0.071 7.3 7.4 1.9 1 23 582 605 582 605 0.94 18 22 0.0001 0.011 16.3 0.6 2 23 617 638 616 638 0.96 19 22 5e-06 0.00052 20.5 2.0 1 23 644 666 644 666 0.96 20 22 2.6e-08 2.7e-06 27.7 0.2 1 23 672 694 672 694 0.98 21 22 2e-07 2.1e-05 24.9 0.9 1 23 700 722 700 722 0.98 22 22 0.00031 0.032 14.8 0.9 1 22 728 749 728 749 0.97
Sequence Information
- Coding Sequence
- atgATGGCCAAGAAAAAAACTCAAATCCCTGAAGATCCTATAGCAACTGATAAGGATACCCaagacaataattttattaagatGAAAATAGACAATGAAATCTTAACCAATTCTGGAGATTTGCAAAGCCATGACGCTATTCCAATGGAGATCTATCAATGTCAAATATGCAACAGACAATTTAGTTCGAAGAATCTCTTTGAGGGCCATATGATAGCTCACAGCGACGTCCGTCCCTATCAATGCGACATTTGCAACAAATCATTTAAACGTACAAATACGTTGGCAGTACATCGTAGAATTCACACACGCGAacgtaattttatttgtgatgtTTGCGGTCGAGCTTTTGTACAAGCCTCACAATTGGGAATGCATCAGCGTCGACATTTTGAAAAATACACGTGTTTTTGCGAATTATGTAACAAAGGCTTTTTCACAAATGCTGAGTTACACGGTCATATGAATATTAAGCATGGCGCTAAAGAGCACGTTTGTCATACTTGCAATAAATCATTTCCAAATAATCATACATTGGTACGTCACGTTAAAATTCACGATCCGAATTTTAAACCCATTAAACATCAATGTGAATTttgtggaaaaatatttgcttATAAAAATTCGCTTATGGTACACGTGAAATCTCACACAGGAGAGAACAAATATGACTGTCATCTTTGTGGTAAATCTGTGTCATCCAAGAGTTCATTACAGGACCATTTGCGGTTACATGGCGGTGAAAAGTCGCTCATTTGCGATGTTTGCGGGAAAGCCTTCCACAAACGAACAACATTAGTCGTTCACAAACGAACGCACACCGGTGAAAAACCATATAACTGTGACACTTGTGGTAAATCATTTACCCAACATTCAACCCTTGTCATTCACAAACGTTACCACACGGGCCAACGTCCCTACCAATGTACATTATGCACTAAATCCTTTGTGTCACGAGCACTTCTCAATGCACATAACAAAGTTCACGTTGGAGCTGTTCAACCCACataCAGCCATCTGACTGATGAACGAAGTCCAGTAACGGCTAAGAAAAcattggtgaaaaaaaaaagcaacgaAATCATTCCAATGACTACCATTCATGTTGGACCAgaagtaattaaaattgaattggaTTCTGAAAGTCAACAAGAGGACTTACCTCTGGTTTATCATTGTAAGCACTGTAGCGTTTATTTCGCCACCCAAGCACTGCTGGATAGTCATGAGATGGAGCACAAACCTAAACGAAAAAATACATGTGAACAGTGTGGTCGAGTATTTCGCACGTATGTTAATTTACGAAAACATATGAAAATGCACATGGGACGAAAGTCGAAAGTTAATCGTGATACAGCGTCAACACAATCAACCATGAAAATGAAACGAGAAAAGAACGATTCCGAATTAGAATGTAAAATATGCAAAAAAGTTTTTCGCCATCGAAGCAATTATCAGAAACACTTATTACGACATACAGCTGGTGATTTAACGTGCAAACATTGCCCAAAAAAATTTCGTCTTTTTCGTGATCTTACTCGACATGAAAAAACTCATTTTTTCCCAAGTTACATGTGCAAAGAATGCGATTATGAAACAACTGTGCTTGCTGCTCTCAGCATTCATATGGTgaaacatacaaataaaacagATCTTCCattcaaatgtaataattGCGATAAACACTTTAGGAAAGCTATTGATTTACAAGAACATTACAATATTCATTCTGGTGATAAACCATTTGTTTGCCAATTATGTGGAAGTGCATTCTATCTTCGACGACAGCTCTCGGCACATTGTCGTCGATTACATCCAGAAATGAAAGCGAATAAGGTTACTAGTACAACATGTGACATTTGCGGACGTGTCCTTGCGACAAAACGTTCGTTATTCCGTCATAAAGAGAGCCACAATCCTACAAAACTTTATCTGTGTGATTTTTGTGGTAAAAGTTTGAGTAGTGCGGAGCATTTGAAAAAACATCGACGTATACATACTGGTGAAAAGCCATATGTTTGCGACATATGCGGTAAAGGATTCACCGATTCAGAAAATTTACGGATGCATAGACGAGTTCATACTGGAGAGAAACCATATAAATGCGATCAATGTCCAAAAGCATTCTCTCAGCGATCGACACTCACAATTCATCGTCGTGGTCACACTGGTGAAAGACCGTATGTTTGTCAAATTTGTCAGCGTGGTTTTTCATGTCAGGGTAATCTAACGGCACATCAAAAAACCACatgtgtttaa
- Protein Sequence
- MMAKKKTQIPEDPIATDKDTQDNNFIKMKIDNEILTNSGDLQSHDAIPMEIYQCQICNRQFSSKNLFEGHMIAHSDVRPYQCDICNKSFKRTNTLAVHRRIHTRERNFICDVCGRAFVQASQLGMHQRRHFEKYTCFCELCNKGFFTNAELHGHMNIKHGAKEHVCHTCNKSFPNNHTLVRHVKIHDPNFKPIKHQCEFCGKIFAYKNSLMVHVKSHTGENKYDCHLCGKSVSSKSSLQDHLRLHGGEKSLICDVCGKAFHKRTTLVVHKRTHTGEKPYNCDTCGKSFTQHSTLVIHKRYHTGQRPYQCTLCTKSFVSRALLNAHNKVHVGAVQPTYSHLTDERSPVTAKKTLVKKKSNEIIPMTTIHVGPEVIKIELDSESQQEDLPLVYHCKHCSVYFATQALLDSHEMEHKPKRKNTCEQCGRVFRTYVNLRKHMKMHMGRKSKVNRDTASTQSTMKMKREKNDSELECKICKKVFRHRSNYQKHLLRHTAGDLTCKHCPKKFRLFRDLTRHEKTHFFPSYMCKECDYETTVLAALSIHMVKHTNKTDLPFKCNNCDKHFRKAIDLQEHYNIHSGDKPFVCQLCGSAFYLRRQLSAHCRRLHPEMKANKVTSTTCDICGRVLATKRSLFRHKESHNPTKLYLCDFCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICQRGFSCQGNLTAHQKTTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -