Basic Information

Gene Symbol
nfxl1_1
Assembly
GCA_030347275.1
Location
JAQQBS010001425.1:3726487-3728932[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.91 7.8e+03 -3.0 1.1 15 19 127 131 126 131 0.81
2 20 0.12 1.1e+03 -0.2 0.8 4 10 162 168 161 168 0.95
3 20 8.9e-08 0.00076 19.4 16.7 1 19 176 193 176 193 0.99
4 20 4.6e-06 0.04 13.9 16.7 4 19 232 247 230 247 0.94
5 20 0.78 6.6e+03 -2.8 0.3 7 11 251 255 251 255 0.80
6 20 2.1e-05 0.18 11.8 10.3 1 19 282 301 276 301 0.86
7 20 0.025 2.2e+02 1.9 11.0 1 18 337 354 326 355 0.86
8 20 0.3 2.5e+03 -1.5 7.4 1 12 389 400 389 400 0.89
9 20 1.6 1.4e+04 -3.8 1.3 6 10 410 414 410 414 0.96
10 20 2.2e-07 0.0019 18.1 15.8 1 19 420 438 420 438 0.93
11 20 0.93 8e+03 -3.1 0.7 6 10 466 470 465 470 0.91
12 20 0.00012 1 9.4 8.0 9 19 485 495 483 495 0.90
13 20 0.015 1.3e+02 2.7 5.9 4 12 507 515 505 515 0.89
14 20 0.73 6.2e+03 -2.7 5.8 14 18 547 551 547 552 0.89
15 20 1.4 1.2e+04 -3.6 0.6 9 12 569 572 569 572 0.77
16 20 0.16 1.4e+03 -0.6 0.5 6 10 578 582 577 583 0.85
17 20 0.00056 4.8 7.2 5.9 1 12 588 599 588 599 0.95
18 20 2 1.7e+04 -5.2 2.7 5 10 612 617 610 617 0.70
19 20 0.002 17 5.5 17.3 4 19 627 642 625 642 0.93
20 20 1.2e-05 0.11 12.5 9.3 1 16 687 701 687 707 0.90

Sequence Information

Coding Sequence
atgcGAAAATTCAAACGTGCTCAGGCACAAAATCAAGCGTCAATTGAACGACacttggataaaaataaagtactTGATTTATCATCCAGTGATGAAGAGAACGaatcaacaaatgaaatattacaacGTGCTGTTAATGAAACATTATCATCATATCAATATGAAGGTGGTGACTCGGAAAAAGCATTATCATACCTAACCGATGTATTTCAATCAGGCGGAGCAATatgtttaatatgtatatcatCAGTGAAAAAAACTGATTCGATATGGAACTGTTCACTATGCTTTTCATTCATGCATTTACCGTGTATTCAACATTGGATACGGGATAGCTTGACGTATAAGCACGAAAAAGGTATAAAGCCATTGTGGGCATGTCCAAAATGTCGTGCGGAATATCCAGAAGATGAAATAcctaaagaatataaatgtttttgcaataaattaaCTGATCCAATTTATCAACCGTGGAATATTCCACATTCATGTGGAGAAACTTGTGGCAAACCATTGCAGCCATTATGTGGCCATAATTGCGTTCTTCTTTGTCATCCTGGACCATGTCCACCATGTCCAAAAATGGTAACTGCTAATTGTTACTGCGAAAAAGCACCCGCACAAACACGACGTTGTAACGCAAAAGAATGGAGTTGtggaaatatttgtaataaaatttactccAATTGTCCACACAAATGTCAATCTGAGTGTCATTCAGGCACATGTCCACCGTGTTCAGCGACTGTAGAAGCGCCATGTCACTGTAAAAATGAATCATCATTGAAACAATGCAATGAATCAATTTgggaatgtaaaaaaaaatgtggaaaattattttcctgtaAAATACACGAGTGCGAGGCTTTTTGTCATCGACCAGGCGATTGTGGTGATTGTCCATTGGCAAAAAATCGTACATGTCCATgtggaaaaaagaaatataatgttTCATGCAAACAAGAAACTGTACCAACGTGCGGCGACACGTgtggaaaaatattagattGCCAATCGCATTATTGTAATATGCGATGTCATACAGAACGTTGTGGACAATGTCTTGAGGTCGTAACTAAAACATGTCGTTGCGGAAGTTATACAAAAGAAATAGCATGCGCTAAAGAATttcattgcaataaaaaatgtacacAAATGCGTTTATGCAATCGTCATccgtgtaataaaaaatgttgtgattgtttattaacaaataatttcaatgtatgtgaaaaaatttgtgatacAACATTAAATTGTCGAAAGCATAAATGTCCAGCGCCATGTCATAGTGGACCATGCTATCCATGTCCACGTACAATTGTAATTCAATGTCGTTGTGGTAACAGTAAAATAACTGTACCATGCGGTACAAAACGTATCAAACCGCCGCactgtaaaaaattatgtaaaattccGCCAGTTTGTCATCATTTAAAGCGTGAATCCCACAAATGTCATCAAGGCGCGTGTCCGCCTTGTaagaaaatttgtaatttaacaTATAAACAATGTGATCATCAGTGTCCAGCTGTTTGTCATACAAAAATTTGGATCAAGGTGCAAATTAATGGCGCAATTGGTAAACCAATGGGTCCATGGGATACACCAAAAGAAGTAATGCAACAAAAAACACTTCCATGTCCGCCATGTGAAGTTCCCGTGATGGTAACGTGCCTCGGGGGCCATGAAACATTACCCTGGCCATGTCACAAAGCCATTTCAAGCTCATGCCAACGTCCTTGCGGACAATTACTTAAATGTACTAATcacaattgtgaattaatttgccATAAAATTGGTAGCTTGAATAATGAGGGATTAAATTGTATGAATTGTGAATTACCTTGTGCATTACCACGACCACAAGGTTGTCCACATCCATGTCCACGTGTTTGTCATCCAGCTCCATGTCCATCATGCAAACAAATTGTACGTATATCGTGTCATTGcggtattaataatttatacaaacgtTGTTTCGAATTGACAAATGCAACGGCTGATGAGCGcgatgaattattgaaatgtgGCAATCAATGTccgaaaatttattcatgtggACATCGTTGCGTTGATAATTGTCATTCGGGTAATTGTCGTAGCTCGGAGAATTGTAATAAACGTGTTAAAGTCATGTTATAA
Protein Sequence
MRKFKRAQAQNQASIERHLDKNKVLDLSSSDEENESTNEILQRAVNETLSSYQYEGGDSEKALSYLTDVFQSGGAICLICISSVKKTDSIWNCSLCFSFMHLPCIQHWIRDSLTYKHEKGIKPLWACPKCRAEYPEDEIPKEYKCFCNKLTDPIYQPWNIPHSCGETCGKPLQPLCGHNCVLLCHPGPCPPCPKMVTANCYCEKAPAQTRRCNAKEWSCGNICNKIYSNCPHKCQSECHSGTCPPCSATVEAPCHCKNESSLKQCNESIWECKKKCGKLFSCKIHECEAFCHRPGDCGDCPLAKNRTCPCGKKKYNVSCKQETVPTCGDTCGKILDCQSHYCNMRCHTERCGQCLEVVTKTCRCGSYTKEIACAKEFHCNKKCTQMRLCNRHPCNKKCCDCLLTNNFNVCEKICDTTLNCRKHKCPAPCHSGPCYPCPRTIVIQCRCGNSKITVPCGTKRIKPPHCKKLCKIPPVCHHLKRESHKCHQGACPPCKKICNLTYKQCDHQCPAVCHTKIWIKVQINGAIGKPMGPWDTPKEVMQQKTLPCPPCEVPVMVTCLGGHETLPWPCHKAISSSCQRPCGQLLKCTNHNCELICHKIGSLNNEGLNCMNCELPCALPRPQGCPHPCPRVCHPAPCPSCKQIVRISCHCGINNLYKRCFELTNATADERDELLKCGNQCPKIYSCGHRCVDNCHSGNCRSSENCNKRVKVML

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00997401;
90% Identity
iTF_01002454;
80% Identity
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