Maet012612.1
Basic Information
- Insect
- Microctonus aethiopoides
- Gene Symbol
- -
- Assembly
- GCA_030347275.1
- Location
- JAQQBS010001424.1:4568795-4577421[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 4.1e-05 0.0037 17.6 0.7 1 21 20 40 20 41 0.96 2 17 1.6e-05 0.0015 18.9 0.4 2 21 148 167 147 168 0.94 3 17 0.00065 0.059 13.8 5.7 1 21 186 206 186 207 0.95 4 17 0.00077 0.069 13.6 2.6 1 21 213 233 213 234 0.95 5 17 0.00085 0.076 13.4 1.4 3 21 291 309 289 310 0.95 6 17 1e-05 0.00094 19.4 1.0 1 23 318 341 318 341 0.98 7 17 0.00054 0.049 14.0 0.4 1 21 363 383 363 384 0.96 8 17 1.1e-05 0.001 19.3 3.0 1 23 392 415 392 415 0.98 9 17 0.28 26 5.5 1.3 1 14 454 467 454 470 0.87 10 17 0.0004 0.036 14.5 2.5 1 21 494 514 494 515 0.95 11 17 0.014 1.3 9.6 0.4 1 21 552 572 552 573 0.95 12 17 0.06 5.4 7.6 0.1 1 15 581 595 581 597 0.90 13 17 2.3e-05 0.0021 18.3 0.9 1 21 631 652 631 653 0.96 14 17 2.2e-05 0.0019 18.5 2.1 1 23 661 684 661 684 0.98 15 17 7.5 6.8e+02 1.0 1.3 1 13 732 744 732 747 0.78 16 17 0.44 40 4.9 0.6 1 21 768 788 768 789 0.93 17 17 0.014 1.3 9.6 5.5 1 23 797 820 797 820 0.98
Sequence Information
- Coding Sequence
- ATGACTTGCTACTGGAATCCCCAGTCTcgaataaatcaatcaaagaaaaataaaccatTCGTTTGCTCCAACTGCGGTGCAAGTTATTCAAAAAGTTCATCATTAACCTCGCACTTGCGTCATGATTGTGAATTAGGAGAGAAAAAAGATCTTCGTCTTGGTCATCGAAGCTACGTAAAAAATTTGGACATCACTGATGTATCCAAATTATTGGATCCGACAAAGTTATTGGCAGTACCTGTAGCTACTGTAAAACCATTTACTTGCAGCAGTTGTGATACATCGGATTCACTTTCCTTTGAGAGCCTTCTACAGCAACTACAGGAAAATCATTGTCGATTCTGTTATCGTTTAATGGATACAGCAGCAACAGAagaacatgaaataaattgccaTGAAAATCCAGAATCATctaatttttcaacaaaagaATCTCAAAGTCAATGTGAATATTGTAATCGTACATTTGCCACTAAAGGTACATTAAGCCGTCATTTAATGTATTTCTGTACAATGAATCGTACATCGGCGTCATTTCAATCGGACATACGTCAATTTATATGTCAACGTTGCGGCACATGCTTCAAACGAAAAAGTCATCTTGATGAACATACACGTCATGATTGTGGTAGAACACATCAATGTGAATTTTGCAAGAGGATGTTTGCGTATTCACGAAGTCTCAAACAACACTTGAAGCAAAgtattttatttacaattggtAACGAATGGATACCACAACATATTGAGGTTAACAATTCTTTGATGACCAACGCTGGAGTTTTTGTAAATGAACCAACATCTATTGttactcaaaataatttttcaacatcgAGAGGTCAAACAAATGTATCATTACGACGTTGGGCCTGTCCTAAATGCCATCATAGCTACAAAAATGCTGCTGATATGAAGAAACATTATCGTTTTTGGTGTGGTCAATCGCCACGATTCACGTGTCCATATTGTGGTAAAAATGGCAAAACTTCATCGAATATATATTCCCACATACGAAGGAATCATCCGGGCAACAGACGATATCAAACTCCTACACGATCACTGAGAATGCATCACGCTGGATTGAGTTTTCCCTGTCCAAAGTGTTCCAGTGTTTTTGGTCAAAAACGAAGCTTAACAACTCATCTACGATACGAGTGCGGACAACTGCCACGATTCAAGTGTCCTTATTGCCCACatgtatctaaaaaaaaatcaaatgttcAAAAGCACATTCGACGAATGCATCAAAATGATGTTGTTTTTGTGCTAGATATACTTCAACGTCAACAGTATTACAATCAAACATTGGATACATATCTACCATGGACACCGCAAACGTCTCAATCTACTGTTGAAGAATTTCGTTGTCACAAGTGCAATGGAACATTCAGACaTTACAAAGCAGTAAGATTTGGTCGGTGGGTGCGTAGACGTCAACGGCGGGCCAATCAACTTCTGATCGATCCAAGTGCACCGAAATTTCCATGCACCAATTGCCAAAGTGTCTTCAGCAGGAAACATAATCTTCAATATCACCTAAAATTTGAGTGTGGTCAAATGCCACGTTTTAATTGTCCCTATTGCGCTTATCTATCTGtgaaaaaatcacaatatttGATGGCATCTGATCCATTGGTTGCTTCAACAATGAAATATCCATGTCCAAATTGTTCATCAGTCTACAGTCGTGATTTCACTCTAAAAAGTCATCTAAAATATGAGTGCGGTTTGGCGCCACGATTCAAGTGTCCATACTGTAATTGGATGTCAAAACGAGCAGGAAATATAATAGaCTACTTTAGTGATCCATTGTCTATAATGCAGAATTCGGAATATCTTCTCATGCAGTTGAAGGATGGTCAAAATGATCTTGCTGTCGCTGCTAAACGATTTGTTTGTCCCAACTTGTGTGGCAGCTCATTCAGTCACTCATACAGTCTTACTCGTCATCTCAGATACGAGTGCGGTCAACAGCCGAGATTCAAATGTCCatattgtgaattatattaCAAGAGAACTTCTAATGTTACTCAGCATATTCGCACACGCCATGCAAATTGTAAAACATAtgcaattgatattattgataataaaattgtgggAATCGCCAGATATCTTCAAGCATCATCAATGGCATGGTATCCACATAAATATCCGAGAAAAGACTACCACACATCATTCCGAAATGAACGTTACTGCTGTCCAAAATgtagCAAATTGTCCAACACAAGTGATGACATTGAATTTCAAAGGAAATGGATCAAGGACAATCATAccttattcaatattatcagTGGGAAATATCATTGTCCCAATTGCAATAATGGTTATGGTCGAAGAGACACTATGCTTGGTCATTATCGATATGAATGTGGTAAAGCACCACGGTTTAAGTGTCCTTACTGTCATTTGTGCAGCAAGAAAACGtcgaatatttatcaacatgtTAGATCAGTTCATCCAAATAAAACGGTGACTTTGGTGAAACTTTATTGA
- Protein Sequence
- MTCYWNPQSRINQSKKNKPFVCSNCGASYSKSSSLTSHLRHDCELGEKKDLRLGHRSYVKNLDITDVSKLLDPTKLLAVPVATVKPFTCSSCDTSDSLSFESLLQQLQENHCRFCYRLMDTAATEEHEINCHENPESSNFSTKESQSQCEYCNRTFATKGTLSRHLMYFCTMNRTSASFQSDIRQFICQRCGTCFKRKSHLDEHTRHDCGRTHQCEFCKRMFAYSRSLKQHLKQSILFTIGNEWIPQHIEVNNSLMTNAGVFVNEPTSIVTQNNFSTSRGQTNVSLRRWACPKCHHSYKNAADMKKHYRFWCGQSPRFTCPYCGKNGKTSSNIYSHIRRNHPGNRRYQTPTRSLRMHHAGLSFPCPKCSSVFGQKRSLTTHLRYECGQLPRFKCPYCPHVSKKKSNVQKHIRRMHQNDVVFVLDILQRQQYYNQTLDTYLPWTPQTSQSTVEEFRCHKCNGTFRHYKAVRFGRWVRRRQRRANQLLIDPSAPKFPCTNCQSVFSRKHNLQYHLKFECGQMPRFNCPYCAYLSVKKSQYLMASDPLVASTMKYPCPNCSSVYSRDFTLKSHLKYECGLAPRFKCPYCNWMSKRAGNIIDYFSDPLSIMQNSEYLLMQLKDGQNDLAVAAKRFVCPNLCGSSFSHSYSLTRHLRYECGQQPRFKCPYCELYYKRTSNVTQHIRTRHANCKTYAIDIIDNKIVGIARYLQASSMAWYPHKYPRKDYHTSFRNERYCCPKCSKLSNTSDDIEFQRKWIKDNHTLFNIISGKYHCPNCNNGYGRRDTMLGHYRYECGKAPRFKCPYCHLCSKKTSNIYQHVRSVHPNKTVTLVKLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -