Basic Information

Gene Symbol
Jarid2_1
Assembly
GCA_030347275.1
Location
JAQQBS010000001.1:4214375-4220472[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 7.8 1.7e+04 -3.8 0.2 52 82 153 181 145 182 0.59
2 2 7.5e-23 1.6e-19 70.0 0.1 6 89 1343 1424 1339 1424 0.94

Sequence Information

Coding Sequence
ATGGTACTGGGTAGAAATgataagagaaagagaaaggagGGTGATTTGGTGGACCTCATGGATCCACTTTCAGAATCTCCCAAAagagcTAAAGTTCATGCTCAGAGAAAATTTGCTCAAGGTGCAGCAACTGTATTTACTTCACCTCAAACTCTTgtgaaggaaaaagaaaaatctaaaCCTTCATTGGTCACTGAATTGATAACACATAAACGTCCTAATACAGAGGATTTTTTAACATTCCTTTGCTTTAGAGGTACATCGATATTGCCACctagtttgaattttttcaatgttggtcagaaaaaagataaatctGAGTCAAAGTCGtcgaaaaaatcaaacaataatagtcaattaatatcaaatacaaCTGCCACTGCAATTGGAGTACTCAAAGTTGAATCACATCACAATTCAGTATCTCTAAGTAATAAATCCACCGATGTagataagaaaaaagtaacaaatgacattaaaaagagtgtaaacaaatataaaacaacaacTTCAACAATTCAagcattgaagaaaaaataccaAGAGCAACGTTTAGCTAAACAaagaattggaaataaattcaaaactcAATGTGTAATGAGAACGCGTTCGGCCACTGGTCGAACtatattaaaatcaacaaCTAAAATAACACCAAGAAAATTTATACGACAAATTGAACCAAAACGTCATTGTTTACGGAGCAATACACTTATAGAAAAATCACGTAAAGCTATTCCACAAAAGAGTAAAATAATAGCGAAGTCAAAGAAGAAATCTGTTGTGAAAGAACAGAGCAGTGAATCATCATCTACAGAATCCTTATCAGAGGATGATCATAAACCTAAAGTTAAATCACAACAACAACCTAAACGATCGTTAAAAACTAATCAGAAAAATACTTGTCCGACAAATAAGTTGGAATTACGACGAGTGACAAGATCACACAGTGAAGTTGCGTCATCAAaccaaaaaatatcatcacaGCGTCCATCGAGAAAAACTAAGGAGGCTGCAACTGTTTACATGGAAATACTCAGTAGAAAATTAGTCAGTCCAGATTTAGAGGTTGATGAAAGTTTGTCAACAGACAGTTATCCAGAATTGCCAAATGCACGAAAAACTTTGCAAacggaaaatgaaatgaaaattaaaagtaaatctATTACAAAGACgaataaagtgaaagaaaCGAAACGCGATACATCAGTAGGAGGTAAATCTGGTGATAAAttgaaaactgaaaaaaattcattgaaaactaaaaaacaaattaaaccacaaaaatatattgatagtGAAAATGAATCAGTGAGTTCGGAGGAGAGTAATATAACGCGGCCAATAACAAGACGTACTAGTGCACATTCAATTGCGCCAATAGTGAATCCACCCACTAGTCGAAGTTTACGTTCATCAGCTCGAAATCCACCGCAAAAATCCGAGACTACTCCAAAATTATCACCTCGGGACAATAGTAAAACATTGATAAAACGAAAACGCGAACAAATAACGAACAAATCATCATCGGGTggcgaaaaaaaatgtgcaaaagaaaaaaaattaaagaacaaAGAAGAAACACAAGAATCTGAAGATGAATCACTGGGTTcagttttgaataaaataaagaaaaaacgagAATTAGCTGAAGCAGCCGAGGAAAAAATACTTCAAGAGAAAAAATCACTGAAACACGTGGAAGTAACAGTAAAAGTtgattcatcaaaaatatccGATGATGAAGGATCTTTTCGTGGTTTTACCACGAAAGCTATTACAAAAGTATTAAATTCATGCTCGAATCAAGTCAGCGTGAATTTAGTAAtgcctgaaaaaaataaagcgaaAACTAcgataattgaaaaacaagaaataattcCATTAGAGATTACGTCTCCAGCAGAAAATGTGCAATCAAAAGTTGAAGCTCCTGGACCATTAATTCCTCCAGCAGAAATAGTGAAATCTGAGAAAAAGGAGTCATTATCATCTAGTAACGTTCAAGTAGGCTCATTATCTTCCATACCCAGTTTATCAGAATCTGAACAAAAATGTATTCACGTTGCAGCTAGTAGTCCCACTCCTATCATTGATATGCCACCATCTGCAACGTTAGGTCGAAAAGAACGTGTAAATATGTCCACggaacaaatagaaaaatggcTAAATGAAAGTTCAATGGCAAAAGATGAGAATAATGTTGAAATGGAAACAGTAtcaacattttcatttgaagtatcggaaaaaaataaacctgaTGTAAGTCATTTGTCCATTCCAACGCGTATTCAGCATTTGGTAAGACCAGTTAATGTGGCAATTGCAAAAATGGCAGAGAAAATGAATCCAAAAAATCGTCGTGGTGATCAAATGAATTCATCAGCAATGGTAACTGGCACGGGAATAGCACTAGCAAAAGTACCAATAACCACTAATTTAATACcaacaaatagaaataaaataaatgctgaTATTAAGGAAATAATAAAGGGACGAATTGCAAAAGCTATTTGCGTTGCAAATAAAGAAACGAATGTATGTGATGATAACAGTGATGTAAGTTCACGTGCAGACGGGACAACATCTACCGAAGGTTCGCCAGATAAAaaatcaatggaaaaaaaatcaatctaTCAGCAGCGTAAAACATTTTTACCAAAGGTAAAGGAACGTAAAATCGCGAAACCAAGTGTTAATGCATTCTCACCTGAAAATGAAAGCAGTGTTTATGCTTTTGAAAGTGATCCAGAAGCGCCCGTAAATACACCATTCAGGAGAAAGCAACGCGATAGTAAATCTGGTGCTTCAGGATCATCAGATATAGAGATATCACATGCAGAAAGTGAAGATGGTAATGTTAAAAGTCCATGCAAATCTAcagaaaaagatgaaaaagaattatcaaaatcaaaaaatgttGGTACAAGCAATGATGATGTAGACATTGTTGGTGCAATACAGTCGATAAATAGCTCTGctgatattataaatcaattaaataaatttcaaatgccggaaaattttcgaaatttatcaaatatacaaattttgcCATTTGGAAAAATTCCAAATGTATGGAACAATGTCAATTGTAGCGCGTCAATTGCTGTACAAGTAAATTTTGATGATCAATCACAAGATCAGCATGCAAATTCATTAAATGTCGATGGTGGACAGCAAAAAAGTACGGAAATATCAACGCAAACTGAAAgcacaaatgaaaatgatgatgacaGTGATGCACACGTATTTTATATTCCTTTACAAACTGTCGCACGAAATGGACCAAATATGGTTCAGGGTCAGCCACTTATTCAGGGTGTAGCAGTAAAACTTGGCACTGAAGGGCCCAATGGACCCAATCAACGTGTATTATTGCGAGCACAGTTAGTGACAAAACCACCATTGGCCGTTGCTCGGTGTCCGCCAGTTGGAACAGTTCAACCAACAACGAGAACACCACCATCTGGTACAAGTGATCCAATTCCATCAACATCCGCATCAGCGATTGTATCACAGCCATCAAATAAACCCACTTCTCTTGCGTCACCTCAACCTCTGATAATTCAAAAAGctgagaaaattattgataataataaacaacaacAAACAACAAGTACTTCTGTTCATGTTAATACAGAAAAAGTTCAAAAATCGCCAAAGGTATCACGTGAAAGAAAAAGTTCTATTGATACAACAAAAGcgacgaaaaaaaatcaaacaaaagttAAAAAAGGTAGTGAAGTAATGTCGACAATTACTCCAACATTCCCAAGTATGGAAGTGAAGGGCGAGGCACGTTTAGTTGAAGCTCCTACGTTTCATCCATCagaaaaagattttcaagatccattggaatatattgataaaattcgtCCGATCGCTGAAAAATATGGAATTTGCCGAGTAGTACCACCATCTAATTTCAAACCTGAATGTAAAGTTTCAGATGATATGAGATTTACTGCTTACAATCAATACATCCATCGTATGCTTCATCGTTGGGGTCCAAATGTTAAAGAAATGAtggcaattaaaaaatatttagcaaCACAAAGTATAACATTAAATCAACCGCCGTGGGTGGGTGGAATGGAAGTTGATTTGCCACATTTATATCAAACTGTTCAGAGTTTAGGTGGTTTAAAGGAAgttattgaaaagaaaaaatggcaAAAAGTTGCAGATGGTATGAAAATACCAAAATCAGCTCAAGATCGTGTTACAAAATTGGATgatatttattgcaaatatttattgccaTACGATACACTGTCGACAAtggagagagaaaaattatttgatgaagtAGAAATGGAATGGGGAAAAAGAGAGAGTAAAGCGTTACATCGACTTAATGAATCTCTATCAACTGATAATGAGGACGATGAAGATGAGGATAGTTCTGATGAAATAGAGGAGTGTATTGTTAAAGGTAGAAATATGCCGTTAAATGCTTTCTATCGAATTGCGCGTAATACTCAACGAATGTGGTTTGGCGAAAGCCAAGGCGGAGCGTGTGAAGCCGACGGTGCATCTGCCATTGAAGTTGAAAATGCATTTTGGAAACATGTTGCTGAACGTAAACGTCATGTTTGCGTTCATGCAGCGAGTATTGATTCAAGTGGTCGTGGATTTGGTTTCTCTGTAGCTAAAAATAGTCCATTCGCACGTCATCCATGGAATTTAAAAGTATTGACAAACAATGCCGGCTCAGTTTTGCGTGCATTGGGACCATTAATGGGCGTTACTGTACCAACACTCCATGTAGGAATGCTATTTAGTGCATGCTGTTGGTATCGTGATCCACACGGTTTACCATGGATTGAATATTTGCACACTGGTGCAAAAAAAATCTGGTATGGAATTCCAGATGAACACAGCGATACATTTAGAGACGCATTATCAAAGATGGTGCCACgtttttgtaaaaatcaaaCTATTTGGTTGCCATCAGATACGGCAATGGTACCGCCGGAAATGTTAGTTAATAATGGTGTACCATTGTGTCACACTGTTCAAGAACCTggacaatttataattgtatttccAAAGGCATTTACATCGAGCATTTGCACGGGCTATGTCGTCAGTGAAAGCGTTTATTTTGCTCAGACAACGTGGCTGGAGCATGctgaacaaatttttaaaGATCTACGAGATAGCTGTGAGCCATCAATGTTTTCTTTGGAGCGATTGCTTTTTAGTATTATCAATGATTCAAGATCACACATTGATATTTTGAAacagattttacCAGCAGTAACGAAAATCCgagaaaatgaattgaattatcgACACGAATTGGAGTACTATGGATTaacaaaaacagaaaaattgtcCTTGCCAGGAAGTGGTAAACGCAAAAAGGGACAAAAAGTTAAGGAAGATGAAAGTGATTATGAGTGTGAAACTTGTCGAGCAAATTTGTTTGTATCATTAGTTACTAATTCGCAAGATGATAGTGCATATTGTCTTCCACATGCGTTACAATTAATTGGACGAAAGAAACAAGTTCTGAAACATTGTACATTGAAGTATACTTATAGCGAGGAAGAATTGGATGACTTAATTCACAAACTGGAGGATAGAATCGAAGCCAAATCTAAAAAAACTAATCAAAACAGGCAAATTAAGTAA
Protein Sequence
MVLGRNDKRKRKEGDLVDLMDPLSESPKRAKVHAQRKFAQGAATVFTSPQTLVKEKEKSKPSLVTELITHKRPNTEDFLTFLCFRGTSILPPSLNFFNVGQKKDKSESKSSKKSNNNSQLISNTTATAIGVLKVESHHNSVSLSNKSTDVDKKKVTNDIKKSVNKYKTTTSTIQALKKKYQEQRLAKQRIGNKFKTQCVMRTRSATGRTILKSTTKITPRKFIRQIEPKRHCLRSNTLIEKSRKAIPQKSKIIAKSKKKSVVKEQSSESSSTESLSEDDHKPKVKSQQQPKRSLKTNQKNTCPTNKLELRRVTRSHSEVASSNQKISSQRPSRKTKEAATVYMEILSRKLVSPDLEVDESLSTDSYPELPNARKTLQTENEMKIKSKSITKTNKVKETKRDTSVGGKSGDKLKTEKNSLKTKKQIKPQKYIDSENESVSSEESNITRPITRRTSAHSIAPIVNPPTSRSLRSSARNPPQKSETTPKLSPRDNSKTLIKRKREQITNKSSSGGEKKCAKEKKLKNKEETQESEDESLGSVLNKIKKKRELAEAAEEKILQEKKSLKHVEVTVKVDSSKISDDEGSFRGFTTKAITKVLNSCSNQVSVNLVMPEKNKAKTTIIEKQEIIPLEITSPAENVQSKVEAPGPLIPPAEIVKSEKKESLSSSNVQVGSLSSIPSLSESEQKCIHVAASSPTPIIDMPPSATLGRKERVNMSTEQIEKWLNESSMAKDENNVEMETVSTFSFEVSEKNKPDVSHLSIPTRIQHLVRPVNVAIAKMAEKMNPKNRRGDQMNSSAMVTGTGIALAKVPITTNLIPTNRNKINADIKEIIKGRIAKAICVANKETNVCDDNSDVSSRADGTTSTEGSPDKKSMEKKSIYQQRKTFLPKVKERKIAKPSVNAFSPENESSVYAFESDPEAPVNTPFRRKQRDSKSGASGSSDIEISHAESEDGNVKSPCKSTEKDEKELSKSKNVGTSNDDVDIVGAIQSINSSADIINQLNKFQMPENFRNLSNIQILPFGKIPNVWNNVNCSASIAVQVNFDDQSQDQHANSLNVDGGQQKSTEISTQTESTNENDDDSDAHVFYIPLQTVARNGPNMVQGQPLIQGVAVKLGTEGPNGPNQRVLLRAQLVTKPPLAVARCPPVGTVQPTTRTPPSGTSDPIPSTSASAIVSQPSNKPTSLASPQPLIIQKAEKIIDNNKQQQTTSTSVHVNTEKVQKSPKVSRERKSSIDTTKATKKNQTKVKKGSEVMSTITPTFPSMEVKGEARLVEAPTFHPSEKDFQDPLEYIDKIRPIAEKYGICRVVPPSNFKPECKVSDDMRFTAYNQYIHRMLHRWGPNVKEMMAIKKYLATQSITLNQPPWVGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSTMEREKLFDEVEMEWGKRESKALHRLNESLSTDNEDDEDEDSSDEIEECIVKGRNMPLNAFYRIARNTQRMWFGESQGGACEADGASAIEVENAFWKHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHSDTFRDALSKMVPRFCKNQTIWLPSDTAMVPPEMLVNNGVPLCHTVQEPGQFIIVFPKAFTSSICTGYVVSESVYFAQTTWLEHAEQIFKDLRDSCEPSMFSLERLLFSIINDSRSHIDILKQILPAVTKIRENELNYRHELEYYGLTKTEKLSLPGSGKRKKGQKVKEDESDYECETCRANLFVSLVTNSQDDSAYCLPHALQLIGRKKQVLKHCTLKYTYSEEELDDLIHKLEDRIEAKSKKTNQNRQIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00451718;
90% Identity
iTF_01001042;
80% Identity
-