Mpol014140.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- RREB1
- Assembly
- GCA_949715475.1
- Location
- OX454417.1:977726-982938[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.014 1.4 10.6 0.6 1 21 186 206 186 208 0.95 2 13 0.00045 0.046 15.3 0.2 1 23 218 240 218 240 0.98 3 13 3.2e-05 0.0032 19.0 7.5 1 23 246 268 246 268 0.98 4 13 0.094 9.5 8.0 4.2 2 22 425 445 425 445 0.95 5 13 0.051 5.2 8.9 0.1 1 23 651 673 651 673 0.97 6 13 0.0003 0.03 15.9 0.6 1 23 682 704 682 704 0.96 7 13 0.0011 0.11 14.1 2.0 1 23 710 733 710 733 0.97 8 13 0.0064 0.65 11.7 2.2 1 23 1045 1068 1045 1068 0.96 9 13 0.00051 0.051 15.2 0.7 2 23 1357 1378 1356 1378 0.97 10 13 0.2 20 7.0 6.3 1 23 1384 1407 1384 1407 0.97 11 13 0.63 63 5.5 5.9 1 23 1471 1494 1471 1494 0.93 12 13 0.082 8.3 8.2 0.9 3 23 1542 1562 1540 1562 0.92 13 13 0.0032 0.32 12.7 4.7 1 23 1568 1590 1568 1590 0.99
Sequence Information
- Coding Sequence
- atgacGGAGCaacagcatcatcatcatcagcaacAACTCCAACGACCAATCGGTATCGATCTTTTGGAACAACAAAATAGACGTCGTCGACGTGCGTCAATCTCATCGGAATCCTCGATGGAAGCAATCGATCTCGCATGCACGCCCAAACGTATCACAAAACATAACGGTTCCAGTCCGACGAGTAGTCGATCCGAGCACATTGATTCCGATAATTTCGAATCGGATGCCGAAGATTTTTCAACCAGTACTTACAAGAAGCAATTGTCGCAACACAAAAATTTCGACCACGAACGTCGAAGCTCCCGCaacagtagtagtagtagttcgATCGGCGGTAATGTTAGGAAGAAGTTTCGAAGCAGTACGCCGAATCGTGGaagtaacaacaacaacagcactGTTGCGTCAACTACAGCATATAACAGCAGTATAGCATCCAGCTTGCCGAATGATAGGACACAGAATGAGTCCGGCTTTGTCGATGTCAGTAGCAGTCAACATTTGAATTCTAGTCCCGAACCACCGAGTGCCACGGATCGTGATGATGTCAAGTATATTTGCCCTATATGTGAGGTGGTGTCCGCCACTCCGCATGAATTCACCAACCATATTCGTTGCCATAATTACTCATCGGGTGATACTGAGAATTTCACGTGCCGTATATGTTCGAAGGTCCTTTCGTCAGCCTCTTCACTAGATCGTCATGTCCTCGTGCATACAGGAGAGCGGCCATTCAATTGCAAATATTGTCATCTAACTTTCACGACCAATGGAAATATGCATCGACATATGCGCACCCATAAGCAGCACATGCAGCAACGTAATGCCAACATTTCCGGAGGCGGTGTGGGCAACGGTAACAGCAATCATAGCAGCAACAATAACCGAAATCTTGCACCCCCTGGCAACGGTGGAAGTGGAGGAGGTACGAGCAGTGGTAATGGTGACGCTGAGAGCGATGAAAGCGACGGTTGCTCAACCGATTCCAGTGCAAGTAGCTCAAATAAAAACGccaaatacaacaacaacaataataacaaCAACCAAAATTACAATAAACGAAAAAGTACCGAAGAAGAGCGGACTGCCGGTACCCTGAAACGTCGCGTGAAAACCACTATTAACAACAATATTATTAGCGAATCTGAATTGGAATACACGCCTGGTAGCCAACAAAAATATTCTTGCCCGCTATGCAATCGAAACGACTTTGCAGACATGTTTACACTTGGCTTGCACATGGATCGCGAACATCCTGGCATACCGGCCAAATGTCGTCAATGCGAGATGGTCTTCAAAAGTCATAAGTCCTTGAACGCCCACCGTTGCACACAACAGCAAAAAATCAATGTAACACAAGGCTTCAAGGATATGACTTTTGTTGATTTCTCTAGTGAAAAGTTTCCGCTTATTGCCAAGTCTTTGTGCGAACAATCAATTCATACGCCAATAACGAGTCAAAAATTTGAATGTCGGAAATGTTTGCGAGCCTTTCCGTGTGCCAGTGCCGTGGATATTCATGCCAAAGATTGTGGCGATTCGCCGGCCCGTGACTATTCGATTCGAAAACGTGGCTCGAGTGAAAGTTCCGAAGAGGAGATTCGTCGAGATGAATTTTTTGCTCATTTAGATTTACGTAACAAGTCGGCCATGAGTTTGGCCAGTACAATGTCATCTCCGCGAACATCTGAAAAATCAGATTCAAATGTGAAAACGGATCACGCACGAAACGCAAATTCatcatataataataattttaacgaGTCCAAAGATCTCGCCGAtattcagtcaattttgaacgtGACTTCATCGTCTAATAGTTTTCTGCGTAATTTCGAGAACGTTGTTAACGCGCCCCCTTCAACTGACTATACTCTGGGCAAGGACGAAGAGGAAGCACAAGACGCTTTTACGTCAGAATTTCGAAAAATGAAATTGCGAGGAGAGTTTCCGTGTAAGTTGTGCACTGCGGTTTATCCGAATTTGCGGGCGTTGAAGGGACACAACCGGGTGCACTTAAGCGCAGCCGGGGCTGGTCCTTATCTGTGTAATATGTGTCCATATTCCATTCACGATAAGGCCGCTCTGATTCGTCACATGCGAACACACAACGGCGACAGACCTTATGAGTGCGCCGTCTGCAATTATGCGTTTACGACAAAAGCCAATTGTGAACGACACTTGCGCAATCGTCATGCCAAAACAACCCGAGAAGAAGTCAAGCGCGCCATCATCTATCATCCATCTGAGGATTCGAGTTGCGAGGATCCAATTAAGAAGCTACAAATGTTCTCTTCGCCAGAATTTGACGATGACGACCATCCAAGTGCCCCGAAAGATCGCTCCACGCCCGTGTCACACTTGAAGGAAATGCTACAATCGACAAGCCCTATAAAAATTCAGGTGAAAAGTCTCGACAAATTGATGGATACCTCCAGCGTATCCGTCAAATCCACTGAGGAAAAGAGCAGTAGCGAAAAAGACACGAGCACAACATCCATCGAATCAGCAGCACGTCCCATCGATCTCAGTATGGATGTATTGGATTTGAGCAAAAAGGCAAAGATTGACGAACCGAAACCCGCTGAAAAGCCTGAGTCGACACCCGAAGATCTCACAACATTGGAGAAAAATCACCAGTGGCTTCTAGCTCAACAGCAAATCTTCAAAGATTCCCTATCCCAAATGGATCCAGCacactatcttcaattgtcgcaGCTCTATCGCAACCTGATGTTTCCATCTATACCGCCATTTCTGTTCCCGAATACATTTTTGccaaataattttggcgatttGAGCAAGTATCCGCCAATGCTGTTGAATCCATTGTTTCCCGGAGCTCCAGAAAATGTGCCTCAAGAAACGGCTGGAATGCGGCCGACCGTACCGCCACCTAATTCGGGAGCGAGTCATTCACCCCTAAAAGTGTCTGCTCCGCCCGCTTCGCTGCAACTTCCACCATCAATGCCACAACAATTGACACTCCCGCGTCATCCCTTGTCCGGTACTCAACCATCTCCAACCATGCTGTCTCAGATGCAAAATACAGGACCAGTGAAGATGGTCATAAAGAATGGAGTGTTAATGCCCAAACAAAAGCAGCGTCGCTATCGCACTGAACGACCCTTTACATGCGAACATTGTGCCGCTCGTTTCACGCTTCGTTCAAACATGGAACGTCACGTAAAGCAGCAGCATCCTCAATTCTGGGCACAACGCCAGCGCAGCGGTCATCATATTATGCGACGTGGTGGCTCGGTAATGTCGCAGATGAGTTCATCTTCAATTTCGCCTCAAGGTTCCGGGCTACCACCGAACCATTTTTCCGTGATCTCCGATCAAGTCAAATATGCCATTCTGGCACACCAGCTGAAAGCACCTAAGGACTCGGATATTCTGCAACAGGCGTTGACACAGAACAAGGTGAATTTGGATAGCAATCAGTTAGGCATGTCCCACAACATTCAGTCGAATATGATGGGTAGCCATGGTTTCGAAGACGATGACCCCAAGCTGATCATTGACGAAGGTAATGAGGGCAACGATGAGGCCGAAGAGGAAGAGGAGGACGAAGATGACGACGACATGTATGACGAACCGAAACCTCAAGATCTCTCTTCAAGTTTTAACCATGCTGCGGCCAAACAGGTAGCCGAAAACATTCTCGAGCAAGCCAGAAAAGCAAGCTCTCAAATCACTTCGACTGACGATCCTGAGTCGAGTGCACAGCCTAATATGGATGCATCAACGAATATGCTCGCGCATGCTGAGTCGGTTGGCAAGTGTTTAAAAAAAGTCGCAAACTCGTCGTTCAAGGAGGATTCGTCAGACCTGGTGCCCGTTTCTAAACTGGTCGATAATGCCACAAATTCAATGTCGACATTCAACAGCTACTTTCGCCCGTCCGATCTGGCCAATAATATGGAGCAAagcgatgaagagggactcgtAGCATCCGGAAGTACGTCGGAAGGCAACAATTCAGGCAATGAGGAGCCCCAAGGAAGCAACGGTCACGAAGGAAAACGCAAATCCGCCTATAGTCTGGCACCTAATCGGGTGTCTTGCAACTATTGCCAAAGAACGTTCCCGTGGACAAGTTCCCTGCGTCGTCATATCCTAACTCACACCGGGCAGAAGCCGTTTAAATGCTCACACTGTCCGCTACTTTTTACTACAAAGAGCAATTGCGATCGACACCTCTTGCGCAAACATGGAAACGTTGAATCGGCCGTTTCTCTTTATGTTCCTATTGCCGATATTCCCGACCCAGTTCCCATTCCTCGGACAGAAGAGCCTGTTGAGGAGCCGCACAAACACCATTCGAACGCAGTGCACAGTCTAAACTTGACTGTGCCTAATTTGAAATCTGTCGAGCCGTTGATGTCTTCATCGGATTTGCCATTCAAATGCCATCTATGCGACTGTTCGTTTGCGGATCGTAATCAATGTTTAGATCATATCAAAGCCAGTCACGCACAGGAATTCGCTTTGCTCTTAGCCAAAGGAGCGATTGACACTGAAGCCGAACAAAATCAGATCCACTCAACCGAGGATGATGAACGAGGTGGTGAGGGCCGCGGCAAATATCCCGACTATGCCAATCGTAAAGTTATGTGCGCATTTTGCATGAGACGATTTTGGTCTACCGAAGATTTGCGTCGTCATATGCGCACACATTCCGGCGAGAGACCCTTCCAGTGCGAGGTATGTCTGCGAAAATTCACCTTGAAACATAGCATGTTGCGACATATGAAGAAACATAGTAACGGTCATAACAACCATCAGTTGAATCATCTGAATAGCGGTTCGGATTTGTCGGAAGATGAACAGCCACCGCAATCCACTggtttgtttcacaaaaatccgTTGCTGACACAGAAAATCCGCGAGGCTTTGAGTCGTGCCGAGGCTTGGCGGCAAAGCAATTTAACCGGCGACCAAAAGGAGAAAATTAACAATCCGATTGCCACAGAAGAGAATTCTGATTTGATTAGTGATCTTTTGGGCATAACTGGACAAGGAATTCTCAACAAACTTCTTTCGTCACCCGATGAAGCCGCTAAATTGTTGGGAGTGGATAAGTAG
- Protein Sequence
- MTEQQHHHHQQQLQRPIGIDLLEQQNRRRRRASISSESSMEAIDLACTPKRITKHNGSSPTSSRSEHIDSDNFESDAEDFSTSTYKKQLSQHKNFDHERRSSRNSSSSSSIGGNVRKKFRSSTPNRGSNNNNSTVASTTAYNSSIASSLPNDRTQNESGFVDVSSSQHLNSSPEPPSATDRDDVKYICPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHMQQRNANISGGGVGNGNSNHSSNNNRNLAPPGNGGSGGGTSSGNGDAESDESDGCSTDSSASSSNKNAKYNNNNNNNNQNYNKRKSTEEERTAGTLKRRVKTTINNNIISESELEYTPGSQQKYSCPLCNRNDFADMFTLGLHMDREHPGIPAKCRQCEMVFKSHKSLNAHRCTQQQKINVTQGFKDMTFVDFSSEKFPLIAKSLCEQSIHTPITSQKFECRKCLRAFPCASAVDIHAKDCGDSPARDYSIRKRGSSESSEEEIRRDEFFAHLDLRNKSAMSLASTMSSPRTSEKSDSNVKTDHARNANSSYNNNFNESKDLADIQSILNVTSSSNSFLRNFENVVNAPPSTDYTLGKDEEEAQDAFTSEFRKMKLRGEFPCKLCTAVYPNLRALKGHNRVHLSAAGAGPYLCNMCPYSIHDKAALIRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTREEVKRAIIYHPSEDSSCEDPIKKLQMFSSPEFDDDDHPSAPKDRSTPVSHLKEMLQSTSPIKIQVKSLDKLMDTSSVSVKSTEEKSSSEKDTSTTSIESAARPIDLSMDVLDLSKKAKIDEPKPAEKPESTPEDLTTLEKNHQWLLAQQQIFKDSLSQMDPAHYLQLSQLYRNLMFPSIPPFLFPNTFLPNNFGDLSKYPPMLLNPLFPGAPENVPQETAGMRPTVPPPNSGASHSPLKVSAPPASLQLPPSMPQQLTLPRHPLSGTQPSPTMLSQMQNTGPVKMVIKNGVLMPKQKQRRYRTERPFTCEHCAARFTLRSNMERHVKQQHPQFWAQRQRSGHHIMRRGGSVMSQMSSSSISPQGSGLPPNHFSVISDQVKYAILAHQLKAPKDSDILQQALTQNKVNLDSNQLGMSHNIQSNMMGSHGFEDDDPKLIIDEGNEGNDEAEEEEEDEDDDDMYDEPKPQDLSSSFNHAAAKQVAENILEQARKASSQITSTDDPESSAQPNMDASTNMLAHAESVGKCLKKVANSSFKEDSSDLVPVSKLVDNATNSMSTFNSYFRPSDLANNMEQSDEEGLVASGSTSEGNNSGNEEPQGSNGHEGKRKSAYSLAPNRVSCNYCQRTFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIADIPDPVPIPRTEEPVEEPHKHHSNAVHSLNLTVPNLKSVEPLMSSSDLPFKCHLCDCSFADRNQCLDHIKASHAQEFALLLAKGAIDTEAEQNQIHSTEDDERGGEGRGKYPDYANRKVMCAFCMRRFWSTEDLRRHMRTHSGERPFQCEVCLRKFTLKHSMLRHMKKHSNGHNNHQLNHLNSGSDLSEDEQPPQSTGLFHKNPLLTQKIREALSRAEAWRQSNLTGDQKEKINNPIATEENSDLISDLLGITGQGILNKLLSSPDEAAKLLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00322926;
- 90% Identity
- -
- 80% Identity
- -