Basic Information

Insect: Microchrysa polita
Gene Symbol: -
Assembly: GCA_949715475.1
Location: OX454419.1:75028757-75031908[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0094 0.95 11.2 1.5 2 23 303 325 302 325 0.95

2 9 0.45 46 5.9 0.3 6 23 334 351 334 351 0.98

3 9 7.8e-05 0.0079 17.7 0.5 1 23 357 379 357 379 0.99

4 9 2.9e-06 0.00029 22.2 2.0 1 23 387 409 387 409 0.99

5 9 0.00039 0.039 15.6 0.3 1 23 417 440 417 440 0.96

6 9 0.039 3.9 9.3 0.8 2 23 447 468 446 468 0.95

7 9 1.8e-05 0.0018 19.7 1.6 1 23 507 530 507 530 0.97

8 9 2.2e-06 0.00022 22.6 1.1 1 23 536 558 536 558 0.97

9 9 2.5e-05 0.0025 19.3 4.2 1 23 564 587 564 587 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0094	0.95	11.2	1.5	2	23	303	325	302	325	0.95
2	9	0.45	46	5.9	0.3	6	23	334	351	334	351	0.98
3	9	7.8e-05	0.0079	17.7	0.5	1	23	357	379	357	379	0.99
4	9	2.9e-06	0.00029	22.2	2.0	1	23	387	409	387	409	0.99
5	9	0.00039	0.039	15.6	0.3	1	23	417	440	417	440	0.96
6	9	0.039	3.9	9.3	0.8	2	23	447	468	446	468	0.95
7	9	1.8e-05	0.0018	19.7	1.6	1	23	507	530	507	530	0.97
8	9	2.2e-06	0.00022	22.6	1.1	1	23	536	558	536	558	0.97
9	9	2.5e-05	0.0025	19.3	4.2	1	23	564	587	564	587	0.98

Sequence Information

Coding Sequence: atgctTTGTCGTATGTGCTTGCTTGAATCTGAGAAAACTTTGTGCATTTTTGAACAGGGCTCTGGACAGTTTCAAATAGCACCGACCATTGGTCGACATTTTTGGTTCGAGCCGGCGAAGAATGATCCAATTTCCACCAAGATATGCATTACGTGCTGGTCTGCAATTTCCGATTTCCATTCATACTATGTGAGAATCGAAGTAGCGCACCGTCAATTGGCTGAGTTTTCAGCAGTAAAAGAGGAGTCTATAAGTTTGGAGCACTTAAAAAATGAATATACCGACGAGTATATGGATCACAAAGATGATAGCATAATAGAGAATGCAGCCCAGAACACGACGTCTAAAACGGGAATAGCAGAGAGTACCTGTCCGGTTTTCGTGGACGTTAATCATGAAGAAAGTGATAGCGATGGTGATCCCAGCCAGAAGTTTTTCGACGACTATAGAGATTATAGAAACGACTGTTCGTCAGATGAAGAATCACTAGCCAGGCGAATTTTGCGCACAAAAGCTGAACATATTAGTCTCAACAAAGAGCCGGAAAAACGTCGACTTGGACGCAAGCCGGGTGGCAAGAATAAACCCAAAACATCTATTGTTAGCGCATCTgacattaaatttgaaaaacacAGTATCGAGGCACAGCCTTCAAATCCTTCAATCACTACCGACAATGATGCATCCCTTTTAGCTATAGTGCAAAATTGTTCGGCCGTTCAAATTGAAGAGAATGAACCCGACTGTGATCAGTTTGAATCAACAGATATGCTAACGAAGCTAAGTCGTGGtacaaaaaacaaattagaaaTTATCAAAAGCAGCGAACGGATGGCTGGGAGTGCGCCTCATTTAGAAAGTAAGGAAAAGTACAAAGAGTACGATCAGGTTATTTCGGAATTTCTTAGATGTGAATTGTGCTCTACGTCCTTCAATACATTCGCTGAAGTTAAACGACACTTTCAAAGAACGCATAATATAATGGGCTATGTGGTCTGTTGCACGGAAAAATTCTATAAACGTGTTTCACTGTATGAACACATACAAAAACATAAGAATCCGGAGACTTTCAAGTGCCAGCTTTGTAACAAAGTGTATGGTAGTGCACAAGTATTGAAAATTCATTTACGGACACACGATGCTTCTTTCGAGAAATCGTATCAATGCGATAAATGTCCACGACGATTTGCCAATTCAACGTATTTGAATAGACACAAACTTACACACATTCCCAAGGAGGAGCATACATTTGCCTGTGATATTTGTAGTAAAACATTTCCATCCAAGAGTGTGATGGAAATACATAAAAAATCggtgcacgaaaaactgtatTCGAAAATGTGTCACATTTGCGCTAAGGTTATCAATGGCAAATCTCTCTTTGCCAAACATCAGCTGGAACACGCGGGTATTGTTGATCCGAAAGTGCAATGCGAACTGTGTGGCATGTGGCTGAAAAACGCATTTCGACTTAAATTGCACAAGGTGAGACGTCACAGTGAAAAGAATAGCGGCGATCATGTATGCCATATTTGTGAGAAAGTTTTGAGTTCGCGTGATGGTCTAACTACTCACATTCGTAAAGTACATTCGTGCAAGGGAAAGTTTGCATGCAGTGTGTGTACAAAGAGCTTCAAATCCTCAACAGCTTTAAAGGAACACATGACAACACACACGGGTGATTATTTGTATACTTGTCCGCATTGTCCGAAAATGTTCAACTCAAATGCCAACATGCATTCACATCGTAAAAAAGTGCATCGTCAAGAGTGGGAGGATAGTCGAAGGAGTCGCGGACTTCCTGTCAATACAAATTGTAAGAAGGCGCAAAAGCAGCCCGACAAGAGTGATTCACAAAATGCGCTAGACTTTACTGCTCAGCAGAAACAAGCAAACAGCAAACTGTTTGATTTCCATTGA
Protein Sequence: MLCRMCLLESEKTLCIFEQGSGQFQIAPTIGRHFWFEPAKNDPISTKICITCWSAISDFHSYYVRIEVAHRQLAEFSAVKEESISLEHLKNEYTDEYMDHKDDSIIENAAQNTTSKTGIAESTCPVFVDVNHEESDSDGDPSQKFFDDYRDYRNDCSSDEESLARRILRTKAEHISLNKEPEKRRLGRKPGGKNKPKTSIVSASDIKFEKHSIEAQPSNPSITTDNDASLLAIVQNCSAVQIEENEPDCDQFESTDMLTKLSRGTKNKLEIIKSSERMAGSAPHLESKEKYKEYDQVISEFLRCELCSTSFNTFAEVKRHFQRTHNIMGYVVCCTEKFYKRVSLYEHIQKHKNPETFKCQLCNKVYGSAQVLKIHLRTHDASFEKSYQCDKCPRRFANSTYLNRHKLTHIPKEEHTFACDICSKTFPSKSVMEIHKKSVHEKLYSKMCHICAKVINGKSLFAKHQLEHAGIVDPKVQCELCGMWLKNAFRLKLHKVRRHSEKNSGDHVCHICEKVLSSRDGLTTHIRKVHSCKGKFACSVCTKSFKSSTALKEHMTTHTGDYLYTCPHCPKMFNSNANMHSHRKKVHRQEWEDSRRSRGLPVNTNCKKAQKQPDKSDSQNALDFTAQQKQANSKLFDFH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -