Mpol027887.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454419.1:88405807-88419104[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.01 1.1 11.1 3.1 2 23 212 233 211 233 0.95 2 18 1.1 1.1e+02 4.7 1.6 1 23 240 266 240 266 0.91 3 18 3.3 3.3e+02 3.2 1.9 2 23 308 329 307 329 0.85 4 18 0.054 5.5 8.8 2.2 3 23 338 359 338 359 0.93 5 18 0.00088 0.089 14.4 1.3 2 23 366 387 365 387 0.96 6 18 0.04 4.1 9.2 1.6 1 23 393 415 393 416 0.95 7 18 8e-05 0.0081 17.7 0.7 1 23 422 444 422 444 0.96 8 18 4.1 4.1e+02 2.9 1.6 1 23 494 516 494 516 0.97 9 18 0.04 4.1 9.2 1.5 1 23 521 543 521 543 0.98 10 18 0.0036 0.36 12.5 0.8 1 23 559 584 559 584 0.97 11 18 0.023 2.3 10.0 0.8 2 23 591 613 591 613 0.94 12 18 0.0078 0.79 11.4 1.2 1 23 618 641 618 641 0.95 13 18 0.0011 0.11 14.1 0.5 2 23 647 669 646 669 0.97 14 18 9e-05 0.0091 17.6 0.1 2 23 673 695 672 695 0.94 15 18 1.1 1.2e+02 4.6 1.8 1 22 701 722 701 724 0.84 16 18 6.8e-05 0.0068 17.9 0.4 1 23 730 752 730 752 0.98 17 18 3e-07 3.1e-05 25.3 1.4 1 23 758 780 758 780 0.99 18 18 0.12 13 7.7 0.1 1 23 786 811 786 811 0.97
Sequence Information
- Coding Sequence
- ATGTCGGATAGCAGAAAGAAGCACGCAGTACCAGCACGACAAAGTGCAGCCAAGATCTTGCCTGACGATTACAAATGCATAATTTGTAATGATGATGTCGGGGAATCCCCACAACCAGTATTTGATGAAGTGGGAAAGGAGCTGGAATTGCAGAAATTACTACTGCAGTGCTTCAACGTAACAGTCgttgaaaagaaaaatgaagTTCAATCTCTATGCGAAGCATGCTTGAACGACCTTATCGAAACAGTGGACATTCAACAAAAGGAAGTGGAGGATGAAGAAGCCAATAGAAGTTTACATCCGGGTACATCCAAAGATCCTTACGGTTCAGATGCTGATGAGCTTGAATACAGTTTGGACAAGTTGGAATCGGCCTTGTTGAACTCGGAAGTGGAAGATGATGAAGATGTCTATGACTTTGAAATGTTGGAGGAAGACGAAGAAACTATTACTCCTGATAATGTGGATGTGGAACCAAAGGAAGAAGTTAACACGGATCTGGAATGCGAAGACgatgaaatttatgaaaatgtcgaTTATCTCGAAACTGTTACGGACTATGACTTCAGGGCATTTAAGGAATCTTGCACAAATATTCGGTATAATGATTTGGATTTTCCCGCGGAATTGTGCTGTAAGatttgcgATGAATACTTCACCAAACACATCGACTTAATGGAGCATCAACAACTGCATTGCACCGATGATGGATTCTATCAATGCTGCCTTTGTGACGGATCAGTTGAAACGTTTGAACATTTGAGTGATTTGGCCTATCATTTGGTGTACAAACACTACGATCTGAGCAAAATATTGCTTTATCTTCAGTGCTCGGTCTGTATGAAACGTTTCAGTAACTTTCTGGTGTTCAATAAACATTCGTGTAACGACAGTAAATCATTGTCAAGATCATTGAAACAGTGCGAGCAATGTGGCGAGGATTTTCAATCTAACAAGAGaTATCGGTTTCACTTGCAATTTCATCTGGATAATCATAGACCAAGAGGCTGTATGATATGCGataaaatgttcatgaatgacAGCCATCTGTATGAGCACGTCCACTACGAACATGAGGAGGATATTGGCTTAACATGTTGCAGATGTGACGTAACATTTACCAatgttgaaaatttgaaggctcACGAAAAAGTTCACGAGCTggtcagatcgtataaatgtcAGCTTTGTCCACGATCGTATTTGTACAATCAGCAGTTGAAAGATCATGTGCTTGCCCATCACACCAAAAAGAAACCATTTCAATGTAAAATTTGTGGAAAAGTCGTGAATAAACTATCCGTACTCAATAAACATATGACATTTCACGAAAAGCCCGAAGAGAAACAGATCATGTGTTGCAGTATTTGCGGTATAGTGGAAGAAACGGCCGAGGAAATTGACttccacattaaaaatttacaCGAAGACAGAATAGCTGAAGCGGAAATTCTCTTGATTACCCTCGATATAGCGTACTCTTGTGAATTTTGCGAAGATGCCTACAGAAGTGTTGAAAGATTGTGCGAACATCGCGAGAAACATTCTAAAGACAGATTCTATTGCAATATGTGTCCATTGGAATATGATGAATACAAAAAGCTGAAAACTCATAAACTGACACATGTTAACTATGTGGATAAGAGTAAAACGTTTCCGGTCATGCGACACTATGTTTGCGATAAGGCGaatTGCAGAGCAACTTACAGCCAATGGACTACTCTTCGCAGCCATAAAAGGGTAAAACACGACAACCCGAGCAGCAATGTTTGCACCACGTGTGATATTGTCTTCAAAAGCGCTGATAGTTGCAAAGAGCATATCCAAAATGTACACGAAGGTGCCGTTCACAGATGTCCGTTTTGCGAGAAGAACTTCATAACGAAAATGGCCATGTCCGTGCACGTAGCTCGAAAGCACAATACGCCACGTGTTCAATGTGACCAGTGTCAGATGGAGTTTACCGGCCAACAATTTCTGGAAAAACACATCCAAACAACACATTGCCCGGTCGAATGCACGCAATGCGGTAAAGTGTTTAAGAATGGTAAAAATCTGGTGGTTCACGAGCGTGCGGTGCATAATAAGGAAAAACGATATTTTTGCTCGTATTGCAGTAAGGGATACTACAATCAATGCGATGCATTGGAGCATGAGGAACAGGTTCACCGGAAAATTAAAAGATATCAGTGCCCAATGTGCGATTACACGTCCGTGTATAAGCAAACCTTGACCATACATATACGCGGGCATACAAAAGAAATGCCATACAAATGTAAAATATGCCCGAAAGCGTTTCGACGATCCTACGGTCTTTCGCTGCACATGAAACGACACTACGACATACGAAATTTTGTATGTCCTTACGAAGGATGCGGATCGGCTTATCCTAACCAGGGAATTTTGAATTCACATTTGAAAAAGAAGCATCCGAATGGAGAAAACAACATTTCACGAAAACGACGTACAATGGGCCTCACAGATCTTGTGCCGCAGGAAGAGATTTTGCCCGATCCGAAACCACCCGCTCCTAAGAAATCGCGACGACGTTATGATGTGCCGCTGACAAATGTATTtatcgatgatgatgatggtttggATGATGGTGTTATTGGTGAGCCACAAAGTAATGTTCACGTTAAACATGAATCTTTACCGGAAGCACAAGTTGAGGGTCTGGATAGCGATCCGGATAATCCGGTTGCATATATACTTGGAACGAATGGCTCTATCGAGCAAGCCGTTATTGTACAATACAATGAAATGGATCATGATTATGTCGGAAAGACTAATGATAAGATTATTTATGGTGATGTGATTGAAGAATATGTGGTTGAATGA
- Protein Sequence
- MSDSRKKHAVPARQSAAKILPDDYKCIICNDDVGESPQPVFDEVGKELELQKLLLQCFNVTVVEKKNEVQSLCEACLNDLIETVDIQQKEVEDEEANRSLHPGTSKDPYGSDADELEYSLDKLESALLNSEVEDDEDVYDFEMLEEDEETITPDNVDVEPKEEVNTDLECEDDEIYENVDYLETVTDYDFRAFKESCTNIRYNDLDFPAELCCKICDEYFTKHIDLMEHQQLHCTDDGFYQCCLCDGSVETFEHLSDLAYHLVYKHYDLSKILLYLQCSVCMKRFSNFLVFNKHSCNDSKSLSRSLKQCEQCGEDFQSNKRYRFHLQFHLDNHRPRGCMICDKMFMNDSHLYEHVHYEHEEDIGLTCCRCDVTFTNVENLKAHEKVHELVRSYKCQLCPRSYLYNQQLKDHVLAHHTKKKPFQCKICGKVVNKLSVLNKHMTFHEKPEEKQIMCCSICGIVEETAEEIDFHIKNLHEDRIAEAEILLITLDIAYSCEFCEDAYRSVERLCEHREKHSKDRFYCNMCPLEYDEYKKLKTHKLTHVNYVDKSKTFPVMRHYVCDKANCRATYSQWTTLRSHKRVKHDNPSSNVCTTCDIVFKSADSCKEHIQNVHEGAVHRCPFCEKNFITKMAMSVHVARKHNTPRVQCDQCQMEFTGQQFLEKHIQTTHCPVECTQCGKVFKNGKNLVVHERAVHNKEKRYFCSYCSKGYYNQCDALEHEEQVHRKIKRYQCPMCDYTSVYKQTLTIHIRGHTKEMPYKCKICPKAFRRSYGLSLHMKRHYDIRNFVCPYEGCGSAYPNQGILNSHLKKKHPNGENNISRKRRTMGLTDLVPQEEILPDPKPPAPKKSRRRYDVPLTNVFIDDDDGLDDGVIGEPQSNVHVKHESLPEAQVEGLDSDPDNPVAYILGTNGSIEQAVIVQYNEMDHDYVGKTNDKIIYGDVIEEYVVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -