Mpol018672.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- RGM1
- Assembly
- GCA_949715475.1
- Location
- OX454417.1:96754692-96756620[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00032 0.032 15.8 4.0 2 23 122 144 121 144 0.94 2 11 0.0062 0.63 11.8 0.5 1 23 174 196 174 196 0.97 3 11 0.00027 0.028 16.0 4.1 1 23 244 266 244 266 0.97 4 11 0.0002 0.02 16.5 0.2 1 23 272 295 272 295 0.96 5 11 0.00068 0.069 14.8 0.3 1 23 301 323 301 323 0.92 6 11 8.9e-06 0.00089 20.7 4.0 1 23 329 352 329 352 0.98 7 11 0.95 96 4.9 0.9 1 19 444 466 444 468 0.88 8 11 0.0011 0.11 14.1 1.6 2 23 473 494 472 494 0.96 9 11 0.0079 0.79 11.4 0.5 1 23 500 523 500 523 0.95 10 11 1.2e-07 1.2e-05 26.6 0.4 1 23 529 551 529 551 0.98 11 11 0.0022 0.22 13.2 0.4 1 23 557 580 557 580 0.97
Sequence Information
- Coding Sequence
- ATGCTGCCCCAACAAATTTGCCACAATTGCGAAAGAGACCTCAAAGTTGCGTACAATTTCAAAATTCGCTACGAAACGAGCGATAAATGTTTTCGTGACAGACTTATTTGTAAAATTGAGAAAACGCCTGAACGGATACAATTTGAACCCATTGATCGCAACGCAACGGATCCAATAATTAATTTCGAGGGCATCACTgttaaaaaagaagaaatggaaaattcatTTATAACCGAAAACGAATACAAACACGATTCGGAAATGGCGGTTGTGGAGGAAGTAGACGAGGCATATTTGGACGAGAAATGTTCGGACATGGTAAAATTAGAGCCTGATTCGGGTCATAGTTCTCAGAAGCCGGTGACGTGTGAAATATGCAGAAAACACTTTACGGATAAATACACTTTAGAAAATCATGTAAAAGAATGTCATGAACTCAGAAACATATCAGATGCAAGTGAATCTGATGACGAAGCAAGCTTCATCCAAGATCTGGATACGCACAACACACAATCCATTTACGACTGTGATCAATGCCCTTCGACGTTCAAAACCGACAATGAACTTATTCTGCATAAAACCACACATAAAACCGAAGAATTGCACGAACAAAGTAACAACACCTCGAACATAACGGGAAAGCCTTATGAATGCAAATTTTGTGGCCTGGAAAATGAAGAGTATGTAGAGCACATACGACACGTTGACACTCATACCGGTAGAAAACGATTTACATGTGATGTGTGCAATAAAGACTTCACTTCAAAATGTAGTCTCACAACACATAAACTTCTTCACACGAAAAACAAACCCTATCCTTGCGATTTGTGCGAGAGGGCTTACAGTCAAAAAAGATATTTAAGAGAACACGTACTATCCGCCCATACAAAAATAAAACCTTATGCCTGCATACAGTGTGGGGTGGCATTCccatcaaatttcaaattaaaaatgcatATGCGTAAACATACTGGCGAACAACCGTATAAATGTAAGCTATGCGGAAAACGTTTCAGTTTTACAAGTTCTTGGAAATCACATATGAAAAGGCGGCATGGTGCAAGTAAACGAAGCAAAATGGTCGTGTCTGAGGATGATACAGTAGAGAGTCCAAAAGGAGTAGAAAAACGAAGCAAAATTGTCGTGTCTGAGGATGATACAGTCGAGAGTCCAAAAGGAGTAGAAAAACGAAGCAAAATTGTCGTGTCTGAGGATGATACAGTAGAGAGTCCAAAAGGAGTAGAAAACCGAAGCAAAACTGTCGTGTCTGAGGATGTTACAGTAGAGAGTCCAAAAGGAGTAGAAAAACGGGAAAAATTGAAACCAGCTTATAAATGCGTATATTGTGGCATTGAAAACGGAAAATTTTCAAGTCATTTGAATCACCTTCGAATCCATAAAGATGAAGAACCGCTTGTTTGCAATATATGCAATAACACTTTCATCTCAAAAGCCAAATTCGATAATCATATGTGTATTCACAGCAACAGTAAGCCTCATGTGTGCAGAGTGTGTTCAGTGGgttttaattcaaaatattatCTAGACCAGCATGTCAGAGCCGCTCATGAGCATCTGCGAACTTTTGTGTGCAAAGAGTGTGGGCAGGCGTTCGCAAGAAACGCTAATTTAAAAACTCACATGAGTAGACATACTGGCGAAAAGCCTTTTGAATGTAACCTATGTGATGAGCGTTTCATAGGTCCAATCCAGCAGACCAGACATCTACAGAAAAAGCATGCAGACCGACAAATCGATGTCGTTTCTAAGAATGACAAAGCCGAGGCTGCAATGGAGTGCGATAATAGCGATGATGACGAGGTAGATGTCATTGTAATGAAAATAGAGGAGGAAGAAGAATTGCAGTGA
- Protein Sequence
- MLPQQICHNCERDLKVAYNFKIRYETSDKCFRDRLICKIEKTPERIQFEPIDRNATDPIINFEGITVKKEEMENSFITENEYKHDSEMAVVEEVDEAYLDEKCSDMVKLEPDSGHSSQKPVTCEICRKHFTDKYTLENHVKECHELRNISDASESDDEASFIQDLDTHNTQSIYDCDQCPSTFKTDNELILHKTTHKTEELHEQSNNTSNITGKPYECKFCGLENEEYVEHIRHVDTHTGRKRFTCDVCNKDFTSKCSLTTHKLLHTKNKPYPCDLCERAYSQKRYLREHVLSAHTKIKPYACIQCGVAFPSNFKLKMHMRKHTGEQPYKCKLCGKRFSFTSSWKSHMKRRHGASKRSKMVVSEDDTVESPKGVEKRSKIVVSEDDTVESPKGVEKRSKIVVSEDDTVESPKGVENRSKTVVSEDVTVESPKGVEKREKLKPAYKCVYCGIENGKFSSHLNHLRIHKDEEPLVCNICNNTFISKAKFDNHMCIHSNSKPHVCRVCSVGFNSKYYLDQHVRAAHEHLRTFVCKECGQAFARNANLKTHMSRHTGEKPFECNLCDERFIGPIQQTRHLQKKHADRQIDVVSKNDKAEAAMECDNSDDDEVDVIVMKIEEEEELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00999994;
- 90% Identity
- -
- 80% Identity
- -