Mpol018652.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microchrysa polita
Gene Symbol
ZNF407
Assembly
GCA_949715475.1
Location
OX454417.1:96635142-96636566[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 4.4e-05 0.0044 18.5 0.8 1 23 116 138 116 138 0.99
2 10 0.0074 0.74 11.5 0.7 1 23 145 168 145 168 0.94
3 10 0.00022 0.022 16.4 3.3 2 23 174 196 173 196 0.95
4 10 8.8e-07 8.9e-05 23.9 2.3 1 23 202 224 202 224 0.97
5 10 0.004 0.4 12.4 0.5 3 23 232 252 230 252 0.98
6 10 0.21 22 6.9 1.9 2 23 283 304 282 304 0.94
7 10 0.0012 0.12 14.0 1.3 1 23 310 332 310 332 0.95
8 10 4.4e-05 0.0044 18.5 2.2 1 23 338 361 338 361 0.96
9 10 8.4e-07 8.5e-05 23.9 3.0 1 23 367 389 367 389 0.98
10 10 4.4e-05 0.0045 18.5 0.4 1 23 395 418 395 418 0.97

Sequence Information

Coding Sequence
ATGCAATGCGAAACTACTGATAAATCATTACGTGCAAAACTGGCTCGCAGAATTCCATCAGAGGAGGGGGGAAATTCGGAAATGTTTGCATTTGAACCAGTCGTAGTGAAATTAGAGAGTATTTTtattaaagaagaagaaaaattcgGTGAATCTAGCTTGAATTCATCCGTTCCGGAAATCAAACTGAAAGACGAGTCCGAAACGAGTGACTTAGACGACACAGCATTCGTCGGGATAGACGACGGGAGTTTGGATGTGATGTCTCAGAATTCAATTAATACAGAATCCGATCCGGTTCGAGTTGATGATGACACGCTGAATCCTGAAAAGGTCACACAGCCATACACCTGCCCAACATGCATGACATCATTTACGGACAGTGAGGAGTTCAACATCCACCTGAAAACGCACCGTACGAGTAAATTGCGTTATGAGTGTCCGCATTGTGATTTACGATTCCAGGCAATCAGTACACAAAAACGACACATTGAAAATGTCCACTCGGGCAAATCGTGGCCGTGTGAAATATGCAACAAAAAACTTTCCAGTAAGCACACCTTAACGAGTCACATTAGAGAATGTCACGAAAAGAAAAACGGACACGAATGTAAGATTTGTGGCAGAGTGTTTTATCGCCGTTCAAACATGGTAACGCATATGAAATTGCACGCTTCGGCATTCATTTACGGATGCGATCAATGTCCATCGACGTTCAAGACACTGATATCTTTAGGCAATCACAAAAGAACGCACAAATCGAAAGAAAAGAACGATCAGCAAGAAGCAGGCAAATCGAAAATATCGGATCTGGAAACTGCTCCTCAATCTAACAACACGTCGCTAATATGTGAACATTGCGGCAAGAAGAGTCAACGACTTGCCACTCATTTGGCGCATTTGCGAGTGCACACGGGCGAGAAGCCATTCGTCTGTACGGTGTGCAATAAGGCGTTCAATCAACGTACATCACTTGATTTTCATAAGCGTGTTCACACGGGCGAAAAGCCTCATGTTTGCGAATTTTGCGGACTGAGTTTTCGACAAATCGGTCACCTTAAGACACACTTACAATCCATTCACGAACAGGCTCGACCGCATAAATGTAGTCATTGCGACAAAGCATTTTCATCGGCCGGCAATTTGAGAACGCACGCTCGATTACATACGGGCGAGCGACCGTTTGAATGTCAGCTGTGTCCGCGACGTTTTATTGATATAAACGGTTTGAAGAGACATCGTCGTAGCGGACATAAGGATGTGACTGAATGTAAGGATATGAAAGTGGAACAGGATTCAATAGAAGATGATGAAAAGAAAGTTCTGGAGGAAAATTGTGACGAGAAAAAGGATGATTAA
Protein Sequence
MQCETTDKSLRAKLARRIPSEEGGNSEMFAFEPVVVKLESIFIKEEEKFGESSLNSSVPEIKLKDESETSDLDDTAFVGIDDGSLDVMSQNSINTESDPVRVDDDTLNPEKVTQPYTCPTCMTSFTDSEEFNIHLKTHRTSKLRYECPHCDLRFQAISTQKRHIENVHSGKSWPCEICNKKLSSKHTLTSHIRECHEKKNGHECKICGRVFYRRSNMVTHMKLHASAFIYGCDQCPSTFKTLISLGNHKRTHKSKEKNDQQEAGKSKISDLETAPQSNNTSLICEHCGKKSQRLATHLAHLRVHTGEKPFVCTVCNKAFNQRTSLDFHKRVHTGEKPHVCEFCGLSFRQIGHLKTHLQSIHEQARPHKCSHCDKAFSSAGNLRTHARLHTGERPFECQLCPRRFIDINGLKRHRRSGHKDVTECKDMKVEQDSIEDDEKKVLEENCDEKKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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