Mpol020310.2
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454418.1:28349233-28350852[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.13 13 7.6 0.1 3 23 57 77 55 78 0.93 2 11 0.0039 0.39 12.4 5.1 1 21 142 162 142 163 0.95 3 11 0.036 3.6 9.4 4.8 1 21 195 215 195 216 0.94 4 11 0.011 1.1 11.0 1.8 2 23 279 300 278 300 0.94 5 11 0.066 6.6 8.5 1.2 1 23 342 364 342 364 0.90 6 11 2.9e-06 0.00029 22.2 1.3 1 23 370 393 370 393 0.98 7 11 7.1e-05 0.0072 17.9 1.0 1 23 399 421 399 421 0.98 8 11 2.6e-05 0.0026 19.2 0.3 1 23 427 449 427 449 0.99 9 11 2.2e-05 0.0023 19.4 0.5 3 23 457 477 456 477 0.98 10 11 1.2e-06 0.00012 23.4 1.8 1 23 483 505 483 505 0.97 11 11 1.2e-05 0.0012 20.3 0.0 1 23 511 533 511 533 0.98
Sequence Information
- Coding Sequence
- ATGAGTCTGGGTGCCATTGAATTCATCACGCCCGAAAGTGTTAAACTAAAATGCGAAATCATCAAACAAGACGAAATCCCGACCAGGGAATGCACCGCCGCCGACGGTACATTGAACACAAAATGTGGCGAAATATTCACCTCCAACAATTCCGATTTTACATTGATTTGTGCATTTTGTGACGCTCCTTTTGTCAATATTGTTGAATTTGGAATGCATCTACGCAGGCATCATGCTACATGCGATGGTTTGGCCGACGAAAAGTCCTGCATCTACTGGGACAACGACGAGTCCAAGGCAAGCATTCATAGTTTTGGCGAGGCTGGTGCTGCAGATGGTGCAGCCGTGCTGGACACTGACTTTTTGGAACCGGAAGAACCGGATCAGATCATCTGCTCGGCGACGTCGGCAGACGAGAAGggttttcattgtgaaatgtgCAATCGACAATTCAGGCAATCGCGAGCCTTCAAGAGTCATATGTGCAATCCGGAAGCATTTCAAGTGGTCGAAACTATGATTGACTCGCTTGAAATTGAGCCGCAGGTCGAGGAGGGAAAGGAGCAGTCATCGCCTGAGAAATTCACTTGCCCGGATTGCAATCGACAGTATCAGTCACATCGTACGCTTTTGCGACACAAGTGCAAGGCTACGAAAAATGTGAAGTCTCCGCCACACACTTCGAAAATTGAAGTGATCGATTCGGAAGAGCCTCAGGCGCAACCGACAATCCATCTCGACGAAGAAGATAATGATGCCAACGACGACTCTCTTCAAGTATCCCAGCCAGAGGCAACGACTTCCCGAGCTGAGAAAGTTTCCAATCCAGACCTCTACTGCGACATTTGCAACCGCCAGTTCAAATACAAGAGCATTTTCAAAAAGCATGGTATGCAGCATGCCGTCGCTCCGACTGCTCTGCGAAACGATCCCGACTATCTCAAATGCATCTATTGCAGTCTCAAGCTGGAAAACACCGCCGAATGGATGAAGCACGAAAGCACTCACACCGATGCCACTCCGTTCCTTTGCTCCTTTTGTCCGAAACGCTTTCGAACTCGTCTCGAAGCTGACATGCATACCAACAGCCATACGGGCAATCGCCCATTCAAATGTGATCAATGCGGGGCATCCTTTGCCCACTCCAACAACCTGTCCACTCACATCAAGCGAGTGCATCTTCGCCTCACTCCGTTCTCATGCAGCATGTGTGACAAGAAATTCCTGCGAAACGTTGAGTTGCGAATTCACATACGACAGCATACAGGCGAAAAACCGTATCAGTGCGAGGAATGCGGTCGCAGCTTTATGATTGCCGTACAGTTGAACGAGCATCGGAAGAAGCATAGCAACGTGCGGGATGTGCTGTGTCCAGAGTGTCCGATGGCGTTCTTTACGAAGAAAATGTTGCGCAAGCATATGATCAAGCATTCAACGGAACGGCCGCACGTTTGTAGTACTTGCGGACGGACGTTTAGTCGCAAGAAGGCTCTTATGGTGCACTTGAAGATTCATCAGGATACGAAGGAGTATGTTTGTGCAATATGTGGTAAGGCATTTGCCCAGCCGGCTGGATTGTATTCGCACAAGAAGTCGCATTTGCATTCGACGGAATCGTAG
- Protein Sequence
- MSLGAIEFITPESVKLKCEIIKQDEIPTRECTAADGTLNTKCGEIFTSNNSDFTLICAFCDAPFVNIVEFGMHLRRHHATCDGLADEKSCIYWDNDESKASIHSFGEAGAADGAAVLDTDFLEPEEPDQIICSATSADEKGFHCEMCNRQFRQSRAFKSHMCNPEAFQVVETMIDSLEIEPQVEEGKEQSSPEKFTCPDCNRQYQSHRTLLRHKCKATKNVKSPPHTSKIEVIDSEEPQAQPTIHLDEEDNDANDDSLQVSQPEATTSRAEKVSNPDLYCDICNRQFKYKSIFKKHGMQHAVAPTALRNDPDYLKCIYCSLKLENTAEWMKHESTHTDATPFLCSFCPKRFRTRLEADMHTNSHTGNRPFKCDQCGASFAHSNNLSTHIKRVHLRLTPFSCSMCDKKFLRNVELRIHIRQHTGEKPYQCEECGRSFMIAVQLNEHRKKHSNVRDVLCPECPMAFFTKKMLRKHMIKHSTERPHVCSTCGRTFSRKKALMVHLKIHQDTKEYVCAICGKAFAQPAGLYSHKKSHLHSTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -