Mpol011747.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microchrysa polita
Gene Symbol
-
Assembly
GCA_949715475.1
Location
OX454416.1:93772929-93785871[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.14 14 7.5 3.8 1 23 299 321 299 321 0.98
2 11 0.62 62 5.5 0.1 1 21 326 346 326 350 0.89
3 11 4.3 4.4e+02 2.8 5.8 1 23 479 502 479 502 0.88
4 11 2.2e-06 0.00022 22.6 1.8 1 23 508 530 508 530 0.98
5 11 0.00061 0.061 14.9 1.3 1 23 536 558 536 558 0.94
6 11 0.0038 0.38 12.4 3.9 1 23 564 586 564 586 0.98
7 11 1.2e-06 0.00012 23.4 2.4 1 23 592 614 592 614 0.99
8 11 2.6e-06 0.00026 22.4 1.1 1 23 620 642 620 642 0.98
9 11 2.8e-06 0.00028 22.3 0.4 2 23 649 670 648 670 0.97
10 11 1.3e-05 0.0013 20.2 0.3 1 23 676 698 676 698 0.98
11 11 9.2e-07 9.3e-05 23.8 2.4 1 23 704 726 704 726 0.97

Sequence Information

Coding Sequence
ATGGGAAGCGAAGAAATTGCAAATCAAGATCGATTATCACTAAAAGATTCACATATTTGTCGATTGTGTGCTGAAGAAAACGCCAACGGCTACCCACTCTTTGAACATAGTGAAAACGGCGAGCAGGATTTAAGTGCACTTATCAACATGTATCTGCCGTTGAAGATTATCGACGATGGTAAATATCCCCGGTGGATATGTCCAGGTTGTCGTCTACAAGTCGAATCTACAGTCGAATTTTTCAATCTTGTCGTATACGGGCAGGAAATGTTACGTATTTGCTACGATACGCAATGTAAGCTGGACAAAGCTTCTGAAAATATGCTGGTGACGCTTGATCCGAACGTAGACGACAGTCGTGTCCTTATTAGCACTGCAGGTTCAGTCGCAAATTTATCTTTCCATgttgatttggttgaaaaaatgTCCTTGACCACAACCGCGGATCCAACATGCGATGACAATTTGGAAAAGCCGAAACGTAAACGGGGCCGACCACCGAAACCTCCCGCTTCAACGGAACCTAAAACAGATACTCCTGTAGAAAACACTCAAGAAGAAGTGGCAGAAGTATGCACTGACTCTACCGATGAGACAATTGTTGCCGGTCGTCGACGACGACAAATCAAAATTCCATCACGTTTTCAGGAAGCTGTTCAGGGGAAAGAACTTGAAAAGATCTATATGGAATCTGGAATTATTGAAAGTGAGACGTATATTGGATCGGATGTCGAAGAGGGTGTAGAAATCACGGCCAGTGGCGAGAGTTCATCAGTGTATCCCGTTGAAGTAATAGGACACTTGAAAGACAATGATGGATGGAATCTAGGGGATCTGGTTGTAGTTAACAACAAACTGCAAAAGACAACGAAGAAGTCAAAGAAAAAGACACGATTCATGTGTGATATTTGTAAAGTATTCTTCTGTTATGAACAAAAGTTCCTGCAACATCGTGCGACGCATTACAAAGTTCGATTCGAGTGTATAGAATGTGCCGAGAGTTTTATGCAACGAAATAGTTTAGCACAACATCAAGCAGAAACGGGGCATCAAGGTGAAGGCATTATTGAAGGTTTTCCAatTATTGTGGAAGATCCTCCTATAGATGAAAACCAAGAGCAACTGGCAAATCAATCTTATAACGTAGACGGACTTCTCGACAATGCCCCTGATTCGGTTCACTGCGACGAACAAAATAATCAACACATAACGGATACTCTATATGAAAATGAAGAAGTATCGTGCGATTTGCGTGCCTCCGACCATGGTGAGGACAATCCGATTAGTTCCTTCGGAGTTTCAATACATTTTAAAGACCAATTGGTTAGTTTCGACAATACGTGCGTGGAGCAATCGATAAATGAAAGCATCGAACTTGGAAACGCTGAATTGAAAACGGAATCTCATAATCAAGACGAATCCTTAGACCATTTTTATAACTGTAACATTTGCCATCGCGAATTCACTTGTAGGCAATCATTCCTTTATCATAAGGAAAGTGAGCACAATGATGGTCGGAGGTTTGTTTGCAGTAAATGCAGTAAATCTTTTAAAAATAAGATTTTGTTGCAAAGGCATCAGTTGGTACACTCAAATGTGAGACCGTTTGCTTGTGATATATGCGGAGCATCATTTAAAACGAAAACACATATGATTTATCACAAGGTGTCTCATACGGGCGAAAAGAAGTACCATTGTACCGTTTGTCAGCAATCTTTCTTGTACAAGAACAGTTTGACGCTACACATGAGATCTCATACGGGACAAAAACCATTTAAATGTTCGGTTTGCGAGAAAACATTCTCACAACATGGAAACATGCAGGAACACATGCGCATTCATACAGGCGAATGCCCATTTGAATGTCCTATCTGTGAACGTAAGTTTAAGACAAGTTCACAAGTTCGTATGCATATAAAAAGACATGAGGCAGTCAAGCCCCTAAAGTGTAATATATGCGATAAGGCTTTTGTTCAAATAGTTGAATTGCGCAACCACCAGCGTCGTCACAGAAACGACAAACCTTATAGTTGTGTTGAATGCGGAAAGGGTTTTATTGATTCAAACGCCCTGAAGAAGCACTTCCGCCTGCATACTGGCGAGAGACCGCATTCTTGCACGGAATGTCCTAGACGTTTTGCTGATCGATCGAATTTGAAGAAACATTTGAAAATCCATGAGAACAAGCGCGCCCAATTCATATCCACGAAATCATCAAATTTGATAAACGGCATAGACGATCAAACAATGGATGACTACACACAATCGTCTGCTCTTAGTCGTGATAATTTCATTTTAGCTAGTACCGATGTAAACGGCATTGTGGGCGATAACCCTATGTGGGATTTAGTCGAAGAAGACGTACGGCTAGATGATGATAAAACGACTGCTATGCCTATTGTCGATACTACTACAAGCGGCCAACAGTTGGTAAACATCACCTTTCAAGATCCTGATGATCCACTTCGAAGCAAAACCACCCTTTTTGTGGTTCAAAATACGGCAACTGATCCTACAATCGACAAAATCAGCTCCCTTCAGGAAGCTTTAACATTAGCGGAATCCTGCAGCACCGAGCAAATgCTTTCAAACTCCAACATGTTCCTAACAAACAGCGAAACAGATTCCAATGCGAGGCAAACGGTTATTTTAAATATTCCGAATTCGGTTGATTTCAACTTGGAAGAGGCTTGTGAGCTGTTTCGTACCGATGATGACGATAGACACGATAGTGATGTACATTTAATTATGAATGGAAAATCAAAAGTAGAATTTGTAAGTTACACGGATTCATTAGATATACCAGACTGA
Protein Sequence
MGSEEIANQDRLSLKDSHICRLCAEENANGYPLFEHSENGEQDLSALINMYLPLKIIDDGKYPRWICPGCRLQVESTVEFFNLVVYGQEMLRICYDTQCKLDKASENMLVTLDPNVDDSRVLISTAGSVANLSFHVDLVEKMSLTTTADPTCDDNLEKPKRKRGRPPKPPASTEPKTDTPVENTQEEVAEVCTDSTDETIVAGRRRRQIKIPSRFQEAVQGKELEKIYMESGIIESETYIGSDVEEGVEITASGESSSVYPVEVIGHLKDNDGWNLGDLVVVNNKLQKTTKKSKKKTRFMCDICKVFFCYEQKFLQHRATHYKVRFECIECAESFMQRNSLAQHQAETGHQGEGIIEGFPIIVEDPPIDENQEQLANQSYNVDGLLDNAPDSVHCDEQNNQHITDTLYENEEVSCDLRASDHGEDNPISSFGVSIHFKDQLVSFDNTCVEQSINESIELGNAELKTESHNQDESLDHFYNCNICHREFTCRQSFLYHKESEHNDGRRFVCSKCSKSFKNKILLQRHQLVHSNVRPFACDICGASFKTKTHMIYHKVSHTGEKKYHCTVCQQSFLYKNSLTLHMRSHTGQKPFKCSVCEKTFSQHGNMQEHMRIHTGECPFECPICERKFKTSSQVRMHIKRHEAVKPLKCNICDKAFVQIVELRNHQRRHRNDKPYSCVECGKGFIDSNALKKHFRLHTGERPHSCTECPRRFADRSNLKKHLKIHENKRAQFISTKSSNLINGIDDQTMDDYTQSSALSRDNFILASTDVNGIVGDNPMWDLVEEDVRLDDDKTTAMPIVDTTTSGQQLVNITFQDPDDPLRSKTTLFVVQNTATDPTIDKISSLQEALTLAESCSTEQMLSNSNMFLTNSETDSNARQTVILNIPNSVDFNLEEACELFRTDDDDRHDSDVHLIMNGKSKVEFVSYTDSLDIPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-