Mpol005851.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454415.1:112759631-112770950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 1.3 10.8 0.4 1 21 239 259 239 260 0.96 2 12 0.0019 0.2 13.3 0.6 1 23 267 290 267 290 0.96 3 12 0.00034 0.034 15.7 2.5 1 23 298 323 298 323 0.97 4 12 5.3e-05 0.0053 18.3 0.4 1 23 362 384 362 384 0.98 5 12 0.096 9.7 8.0 0.2 1 23 390 412 390 412 0.95 6 12 3.9e-05 0.0039 18.7 0.8 1 23 418 441 418 441 0.98 7 12 1.1e-06 0.00011 23.6 0.3 1 23 447 469 447 469 0.98 8 12 4.7e-07 4.7e-05 24.7 0.8 1 23 475 497 475 497 0.98 9 12 0.31 32 6.4 0.2 1 23 526 547 526 547 0.93 10 12 7.3e-06 0.00073 21.0 0.3 1 23 553 576 553 576 0.97 11 12 6.7e-05 0.0067 18.0 2.4 1 23 582 604 582 604 0.96 12 12 0.011 1.2 10.9 3.0 1 21 610 630 610 631 0.93
Sequence Information
- Coding Sequence
- ATGCAGGAAGAATTTGAGGTGAAGAAGTGCTTGGATCCTGAGCCTGATATTTTGAAATCAGAAACAACTACTTTGCCGGCCATAGACGAGGGAACTATTGAAGATAAGTGCCGGGCATGTACCCGCAATTTATCAGTTCTTAAGTACAATCTGTTTGAACCATTCGAGATATCGGAACAATTTACACGGTTATCAACCACTCGActCGATCCTGACGATCTTCTTCCAAAGTCCATATGCCTAGAGTGTTTTCATCGCCTGCAAGAAGTTGAAAGTTTTCAAAAAACATGTCGTGCATCCTACGACCTTTTCGTTCATTTCATTGCAAACAATTTAAAGAACGATTCTCCAGAGACAACATTTGAATCCCTACTACCAGCAAAAGTTACAAATCCACTTGAAAACTCAACAGATACACAAGCAAGTTCATTTGCCTTTGAAGAAGTAGTTATACAAAATATCAAGAATGAAGATGAATATGATGTCAAAagcgacgacgacgatgaccAATCTACCAATTCTCTGTCAGGCGAATCTGATACAGACGAAGACGACACACTCCCATCACCTCAGGTAGAATGTACAATCAATGAGGGCGGCGACCAGCAAGCAACTGCACAGCCAAAACAGAAACGAAAATATCGCAAAAAGAAGAAACCAAGGAAAACGAGAGTGAGAAAGGAAGTTGGACGTACTCAAGATCCAAATGCACAGTTTACATGTGAAAAGTGTGGCGATAAATTCGATAGTGAAATTCACTATAATGCACATTTGCGATTAAAGGAAGGAAAGAAGCCTTATCCGTGTCAGCAATGTACACGCGAATATGTATCACTAAATCTTCTGGAGAAACACATTCATATTGAACACTCGGCCAATCTGCCGCCCAATTACGAGTGTAAGATCGGCGACTGTACTCTGAAATTTCGAAGTAAGCACGCGTTGACCAATCATCAATTGAAGAAACATGCCGATGTTCTGCAGGCGAGAGAAAAGCGACGGGTCGTTTGCGTAACGTGTGGTAAATGTTTGTCTGGCGGAACCATACGGgaacaCGAATTGATGCACAAAGGACTGGCTCCGTTTCCTTGCGACATGTGCCCGAAAAGCTTCATAAGCAGCATTCGATTGGAGAAGCATAAGCTCACGCACTTGAACATTAAGGAACACGCGTGTCCGATATGTGGCCTTAAGATGAGATCTAAAAATGATGTGGACGGTCATATGAATGTGCACACCCGTATACGCAAATTTCCGTGTGAGCATTGTGAAACGGCTTTCCTAACAAAAGCAAATCTCCAACGACATGTCCGCACCGTCCATTTTCGAATTAAAGAGTTCGTTTGTACGTATTGTGGCGAATCGTTCGGACAATCGATCACATTACAACGACACATGATGCTACACACGGGCGAGAAACCGTTCAAGTGTCCTTATTGCGGCAAGGGATTCGTACAGAAAAGCAAAATGAAGGCTCATGCACGAAATCACAAGGAAAAGGGCGATGAACTTTTGCCCGATGTTGTGACGGAAGAAGACAAGCCCAAAGAAGATGTAGCGGAAGGATTTAGAAATTTCGCATGTGAAATATGCGACGAAAAGATGACTTACAAAGAGCTGAAAAGTCATATGGCCGATCACAAACGCGATCAGAAGTACATATGTGAAATATGTAATACGATGTTTAAAGAGTCCAGATCCCTGGAAAAACACATGCAAATCGTTCACGAGGGCATCAAACCGCATGCATGCAAATTTTGCGATAAGACATTTGGTGCGGCGTCAACGTTGCGCAATCACACAAGGACACATACAGGCGAAAAGCCGTATCATTGTGTACATTGTGAAAAGCGATTTATTACACGTTTTGCGTTGCAGTATCACGAGAAGAAGCGTGAAAGAGATATTGCCAAAGGGAAAATACCGTGTAGTAAGGATGGACCGCCGCCTGATGCAAAGGCCAAACGAAAAAGAAAGCGAAAGTCGGATAGAAAAAATGTTATGAATACGAGCATGACAACGTCGAATAGTGAAATTGAATTACCGAGCGCTGATATGCCACTGACGAATGTTGTATCAACGCCCACCGTAGTACAGATAGAAATACTACACACAGACAGCGAACACACTGCATCGTACAATCAGTATGACCCGATGCTGGTGTAG
- Protein Sequence
- MQEEFEVKKCLDPEPDILKSETTTLPAIDEGTIEDKCRACTRNLSVLKYNLFEPFEISEQFTRLSTTRLDPDDLLPKSICLECFHRLQEVESFQKTCRASYDLFVHFIANNLKNDSPETTFESLLPAKVTNPLENSTDTQASSFAFEEVVIQNIKNEDEYDVKSDDDDDQSTNSLSGESDTDEDDTLPSPQVECTINEGGDQQATAQPKQKRKYRKKKKPRKTRVRKEVGRTQDPNAQFTCEKCGDKFDSEIHYNAHLRLKEGKKPYPCQQCTREYVSLNLLEKHIHIEHSANLPPNYECKIGDCTLKFRSKHALTNHQLKKHADVLQAREKRRVVCVTCGKCLSGGTIREHELMHKGLAPFPCDMCPKSFISSIRLEKHKLTHLNIKEHACPICGLKMRSKNDVDGHMNVHTRIRKFPCEHCETAFLTKANLQRHVRTVHFRIKEFVCTYCGESFGQSITLQRHMMLHTGEKPFKCPYCGKGFVQKSKMKAHARNHKEKGDELLPDVVTEEDKPKEDVAEGFRNFACEICDEKMTYKELKSHMADHKRDQKYICEICNTMFKESRSLEKHMQIVHEGIKPHACKFCDKTFGAASTLRNHTRTHTGEKPYHCVHCEKRFITRFALQYHEKKRERDIAKGKIPCSKDGPPPDAKAKRKRKRKSDRKNVMNTSMTTSNSEIELPSADMPLTNVVSTPTVVQIEILHTDSEHTASYNQYDPMLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -