Mpol020272.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454418.1:28015502-28018215[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0099 1 11.1 3.0 2 23 87 109 86 109 0.96 2 14 0.00026 0.027 16.1 1.6 1 23 121 144 121 144 0.95 3 14 0.021 2.1 10.1 3.9 1 23 207 232 207 232 0.97 4 14 0.00024 0.024 16.2 2.0 1 23 244 267 244 267 0.96 5 14 0.042 4.2 9.2 1.5 1 23 294 317 294 318 0.96 6 14 0.00055 0.056 15.1 0.2 2 22 339 359 338 361 0.89 7 14 9.8e-05 0.0099 17.4 0.5 2 23 375 396 374 396 0.96 8 14 0.0014 0.14 13.8 1.7 1 23 401 423 401 423 0.95 9 14 6.3e-05 0.0064 18.0 6.3 1 23 429 451 429 451 0.98 10 14 4.2e-05 0.0042 18.6 1.4 1 23 457 479 457 479 0.98 11 14 0.86 87 5.0 2.3 1 23 485 507 485 510 0.78 12 14 0.00035 0.035 15.7 0.5 1 20 513 532 513 535 0.94 13 14 2e-06 0.00021 22.7 0.6 1 23 541 563 541 563 0.98 14 14 4.8e-06 0.00048 21.6 1.3 1 23 569 591 569 591 0.98
Sequence Information
- Coding Sequence
- ATGAATCGATGCCCTCTGCCTAAGATAAACGAAAACTGCCAAGTTTATTCTATTCAATCAAGACCCGGATTGGTGATTAAAGCTGTAACATCATTAAGTCAGTCAAGAAGTAAATCGCTGGATCCCAACTTTGACGAAATTATTCAATCGGTCAGGAGCGCTCACGAAACCGAAGAAAATTTCATTTCTGAAGATGAAGCCCAAGACAACGTGGACCAATCCGAATCGGAGCATATTGATGACAGTGAAGAGACATTAAAATGCAATATTTGTGAACGTACTTATTTGCATCGTTATTCTCTGATAAGACACAAAATGAAAATGCATCAATTTTCCGAGCGACTACCGAAACGACCGAATTTCAATTGCAATATATGTAACCGAAGGTTCGTGCAAAAGCGGAAGATGTTGGCGCATATAAAGGATTTTCACGACAATGTGGAAACAGAGATCGTTGAAAACCCCCAAGAAATGGAAGTGTCAGATCAGGAAGAGGCGGGATCCGATGATCGCTGTGACGGTTCTATGGATTCTAAAACCGAACCGAAGGACAAACCTGTGGAAACACTCGAGGATCAACAAAAATCACTTGGTTCCGTGTCCGTTAATGGGCAGAAATTTAAATGCGATGTGCCCGACTGTGAACATGATTATAAAAGTCACAATTCCCTTTTACGACATAAGAGAAAAATGCACGGAATCTGGAAAGATCAACGTAGAAAAGAGCAATTCGCTTGTAAGATATGCGACAAGAGATACCAAAATTTCACCAATCTTTTTACGCATCAAAGTAAAGCTCATGGCATCCAGATGACCAAGGCCATGGCAATGCAATCTAAAGAGAATTATACAATCGTCTATCCCGACGCAAAAGAACAATTCCCTTGTGATAAATGTAATCGCGTTTATTTATATGAAAGTTCACTTGTCGAGCACAAAAAGAAAGGTCACCATAAAGTCATCCCGCCGCCTCCGACTTTGCCGACAAACGAGTCTCCGATTGTACAGGGAAAGGAATGTGCCATCTGCGGTGAAATGTTCTCAAATACAGATAAACTAAAAGCCCACAAATTTGCAGCTCATGGAATTCCAATTACAGTTTTGCCTCCACTGGACCCGTTGCAATGCAAATATTGTGAGGAAAAGTTTGAAAATAAGGAATTACTTACGTCCCATGAGGCCACACATCCTAATTATCAGTTTCCATGCAAAATTTGCAAGAAAACATTCAGATCTCGACTTACACGCCTCGAACATATGTCCTTGCATACCGGCGAATATCATTTTAAATGTTCGCATTGTCCAAAATCGTTTGCCTGCCGTTCCAACTTGTTTCGTCACATACAATCGCATTTGGAAATAAAAAAGTATAAGTGCAGCTATTGTGATAGACGTTTCGTGCAGAGTAGCGCGAAAAAGGTCCATGAGCTTACACATACCCGCGAGAAGATGCATCAATGCGAGGAATGTGGTGAACGATTCCTTTTGGCGAATAGATTGAAATTTCACTTGCGCCGACACAAGAATATTCGCAAGTATAAGTGTAAAGTTTGTTCCAAGGCGTTTTTTGAAAGGGGCCAATTGCTGAATCATATGCCTGTGCATACGGGGGCGAAGCCATTTAAGTGTGAGACTTGTGGAAAAAGTTTTCCGCGTCGAACCGCATGGAGATCGCACATGCTTTTAcattcggatgaaaagaaaTATGCTTGCACGGTGTGTGATAAGCGATTCGCTCAACACGGTGGACTCTATTCGCATATGAAAACGCATAAAAAGGAGATGGAAATGCCATAA
- Protein Sequence
- MNRCPLPKINENCQVYSIQSRPGLVIKAVTSLSQSRSKSLDPNFDEIIQSVRSAHETEENFISEDEAQDNVDQSESEHIDDSEETLKCNICERTYLHRYSLIRHKMKMHQFSERLPKRPNFNCNICNRRFVQKRKMLAHIKDFHDNVETEIVENPQEMEVSDQEEAGSDDRCDGSMDSKTEPKDKPVETLEDQQKSLGSVSVNGQKFKCDVPDCEHDYKSHNSLLRHKRKMHGIWKDQRRKEQFACKICDKRYQNFTNLFTHQSKAHGIQMTKAMAMQSKENYTIVYPDAKEQFPCDKCNRVYLYESSLVEHKKKGHHKVIPPPPTLPTNESPIVQGKECAICGEMFSNTDKLKAHKFAAHGIPITVLPPLDPLQCKYCEEKFENKELLTSHEATHPNYQFPCKICKKTFRSRLTRLEHMSLHTGEYHFKCSHCPKSFACRSNLFRHIQSHLEIKKYKCSYCDRRFVQSSAKKVHELTHTREKMHQCEECGERFLLANRLKFHLRRHKNIRKYKCKVCSKAFFERGQLLNHMPVHTGAKPFKCETCGKSFPRRTAWRSHMLLHSDEKKYACTVCDKRFAQHGGLYSHMKTHKKEMEMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -