Mpol014554.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- znf423
- Assembly
- GCA_949715475.1
- Location
- OX454417.1:10327909-10345192[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.016 1.6 10.5 0.8 1 23 93 116 93 116 0.91 2 21 0.046 4.7 9.0 1.8 1 23 120 142 120 142 0.95 3 21 0.003 0.31 12.7 3.9 1 23 148 171 148 171 0.95 4 21 0.00061 0.062 14.9 0.7 2 23 180 201 179 201 0.94 5 21 0.09 9.1 8.1 2.1 1 23 278 301 278 301 0.93 6 21 0.0028 0.28 12.9 0.4 1 23 305 327 305 327 0.96 7 21 0.036 3.6 9.4 2.3 1 20 333 352 333 352 0.97 8 21 0.0018 0.18 13.5 0.9 2 23 365 386 364 386 0.94 9 21 0.0036 0.36 12.5 0.5 1 23 441 464 441 464 0.93 10 21 0.0017 0.17 13.5 0.2 2 23 469 491 468 491 0.90 11 21 2 2e+02 3.9 0.4 1 23 497 520 497 520 0.87 12 21 1.4 1.5e+02 4.3 0.5 2 19 529 546 529 550 0.88 13 21 0.0017 0.17 13.5 1.8 1 23 566 589 566 589 0.95 14 21 0.03 3 9.6 1.1 1 23 597 619 597 619 0.90 15 21 0.00011 0.011 17.3 0.2 1 23 625 647 625 647 0.97 16 21 3.2e-06 0.00033 22.1 1.0 1 23 653 675 653 675 0.98 17 21 0.00016 0.016 16.7 2.6 1 23 681 703 681 703 0.97 18 21 0.22 22 6.9 1.8 2 23 709 730 708 730 0.95 19 21 0.0021 0.21 13.3 0.1 1 23 736 759 736 759 0.93 20 21 0.0028 0.28 12.9 1.1 1 23 767 789 767 789 0.97 21 21 5.4e-05 0.0054 18.3 2.8 1 23 795 818 795 818 0.95
Sequence Information
- Coding Sequence
- ATGACCCAGGACCCGATTGATACCAGTGCCGTACGTACAAGAAAATCGTCCCGAAAATCACCACGCATCAAACACGACGATTTTAAAAATCACGAAGAAATTGATTTTGAAGACAATAATTTCAAACGCGTTCATTTCGAAGAAATCCTCCTTGAAGATATACCAAAATTGGAAGCAATCGAACACGAGGGCGAACAATCAACCGATCGTCGTGCGACAAGCAAACGAACCAATAATTTCGGAACGCAAAAGCATTCAAGTAAAGTTTTCCGACAATATCCTTGCTCGCAGTGTTCGAAACGTTTTTcAACGATACAGGAGCAGGCGCGACATGTGGGAAAGTTTCATAAGAACATATTCATGTGCAAATATTGTGGAATGGAATTTGAAATGCGACATTTGCAACGAGAACATTTATCCGAACATTATGATATAGCACCGTTTCCTTGTGAGCAGTGTGATAAAAAGTTTTTCACAAGACGTTGCCTAAACTTGCACACACAACAAATTCATTTGGACAGGAATCCATCCGATCTTCCGTGTACCATATGCGGAAAAGGATTCAAAACTGAGGAGCAATTGCAATGTCATTATGCAATGCACTCGGGTGATAAGAATcatttgtgtgatttttgtgAGGATTCTGCACGCAGTAATCCTGGCAAGGATGATTCAAAGATGGGCATTGAAAATAATCAGGCAGAAgaatttacaatcaaagaaaAGCTGGTGGCGGGGTCCATAGATCTGAAGGATGAATCAATTCTCCACGAAGACAACAACGATATAAAAAAATCATCCCGAAAGAAGAAAACAGAAAGCAACAAGCAGTACTGTTGCAGTCAATGTTCACAGGAATTCGTCACTCTTTTGGATCTTAGCAAACATGTGGGAAAGTTTCATAAGCATATCTTCATGTGCAAATATTGCGGCCTGGAATTTGAAACGCGAATTTCGCAACGAGCGCATTTATTGGAACACGATGACATAGCACCATATCCTTGTGAAAGATGcgacaaaaaatatttcacaagACGTTGCCTAACCTTGCACATATGGGAAGCTCATTCATGCAGAAATCCAACAGATCTTCCATGTACACTGTGCGGAAAAGGATTTGAAACGAAAGAGCAGTTGCAATGTCATTATGCAATGCATTCGGGTGATAAGAATCATTCTTGTGAGTTTTGTCGTGACGATAACGTTGCGACTATGGGCTCTAAAAATGTTCGCCTAGAAGAGCCCAGACACGAAGATGTTAAGCCATCAGAAGCGGAAATTAGCATCCCTGTGAAGAGCGTACGCgaagcgaaaaaaatatttaattgcaGTCAATGTCCGCAAAAGTTCTCCACTCTACTCGAGCTTAGCAAACATGTGGGCAAGTGGCATAAGAATATAATCATGTGCAAATATTGCGGGAAGGAGTTTGAAACGCCATATTTGCGTCGATTGCATCTATCGGACGTACACGGCGATATAGCACCATATGCATGTGATCAATGCGATGGAAAATATTTCACGAAAAATGGCATGATGTTGCACAAAGAGCAAGTTCATTTGCAGACGAATCCATCATATCGTCAATGTGGAATATGTGCGCAAGTATTCGATACGAGACAACAATTGGAGTGCCATTATCCGATTCATACGGGTGATAAGAATCACTCTTGCGAGTTGTGTGATGCCACTCCACACCAATGTAAATATTGCAATAAAGCCTACTTCTCAATTAGCGGACTGCGCTTGCACACAAATGAAGTTCATCTTGGCCTAACCACCGCCAATTTTCTGTGTACCGTTTGCGGAAAAGGATTTGCCAATAAGCAACGATTAGAATGTCACTATGCCGTTCATGCCGAAGTGAAACCTTTCGCTTGTGAGGCGTGTGATAGACGTTTCACAACGGTCGTTTCACTGAAAGTCCATCTTCGCATTCATAACAACATTCGACCATACGTATGCCAAACGTGTAACAAGGGCTTCACCTACAATAGTTCGCTGAAGGTGCACGAACGTATACATCGGGGTGAGAAACCTTACAAGTGTACGGTATGCGATCGAGCTTTCCGTCAACAACACATTCTACGAACACACATGACGCTGCATACGGGCAAAACGGTCAAATGTCCACAATGTGATAAGCTGTTCAGTTGTCGGGGATTTATGTTAATACATTTGCGCAATCACACTGGCGAGCGGCCGTATTTGTGTGCGGAATGCCCGCAAAGCtttaagaaaaagaatgagttaGATGCTCATGTCATTTCACAACATTTGGGCGATAATCGACCCAAATATACGTGTAACGTATGTTCGAAAGAGTACTTAAAAAAGGAGTCACTAGAACGGCATATGTACGAGCACCGGGGTACGAAACCGTTTAAATGTCGTGAGTGTGACAAGGGTTTCGTGCGAAAGTATAAGTACCGCAAACATCTCATGGATTCTCATTCGATACAGCTGGATGACATCGAGGACAAATAA
- Protein Sequence
- MTQDPIDTSAVRTRKSSRKSPRIKHDDFKNHEEIDFEDNNFKRVHFEEILLEDIPKLEAIEHEGEQSTDRRATSKRTNNFGTQKHSSKVFRQYPCSQCSKRFSTIQEQARHVGKFHKNIFMCKYCGMEFEMRHLQREHLSEHYDIAPFPCEQCDKKFFTRRCLNLHTQQIHLDRNPSDLPCTICGKGFKTEEQLQCHYAMHSGDKNHLCDFCEDSARSNPGKDDSKMGIENNQAEEFTIKEKLVAGSIDLKDESILHEDNNDIKKSSRKKKTESNKQYCCSQCSQEFVTLLDLSKHVGKFHKHIFMCKYCGLEFETRISQRAHLLEHDDIAPYPCERCDKKYFTRRCLTLHIWEAHSCRNPTDLPCTLCGKGFETKEQLQCHYAMHSGDKNHSCEFCRDDNVATMGSKNVRLEEPRHEDVKPSEAEISIPVKSVREAKKIFNCSQCPQKFSTLLELSKHVGKWHKNIIMCKYCGKEFETPYLRRLHLSDVHGDIAPYACDQCDGKYFTKNGMMLHKEQVHLQTNPSYRQCGICAQVFDTRQQLECHYPIHTGDKNHSCELCDATPHQCKYCNKAYFSISGLRLHTNEVHLGLTTANFLCTVCGKGFANKQRLECHYAVHAEVKPFACEACDRRFTTVVSLKVHLRIHNNIRPYVCQTCNKGFTYNSSLKVHERIHRGEKPYKCTVCDRAFRQQHILRTHMTLHTGKTVKCPQCDKLFSCRGFMLIHLRNHTGERPYLCAECPQSFKKKNELDAHVISQHLGDNRPKYTCNVCSKEYLKKESLERHMYEHRGTKPFKCRECDKGFVRKYKYRKHLMDSHSIQLDDIEDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -