Mpol031187.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454420.1:56060506-56076742[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0003 0.031 15.9 5.4 1 23 179 202 179 202 0.96 2 15 4.9 4.9e+02 2.7 0.1 2 10 229 237 228 245 0.86 3 15 0.095 9.6 8.0 0.6 2 23 277 298 276 298 0.95 4 15 0.00088 0.089 14.4 1.2 1 23 374 397 374 397 0.97 5 15 0.0032 0.32 12.7 0.2 1 21 404 424 404 425 0.95 6 15 3 3.1e+02 3.3 0.9 1 20 434 453 434 457 0.83 7 15 8.5e-06 0.00086 20.8 2.4 1 23 477 499 477 499 0.98 8 15 0.003 0.31 12.7 5.2 1 23 508 530 508 530 0.98 9 15 0.26 26 6.6 7.3 1 23 539 561 539 561 0.96 10 15 4.3e-07 4.3e-05 24.9 1.8 3 23 571 591 569 591 0.98 11 15 3.3e-07 3.3e-05 25.2 1.4 3 23 608 628 606 628 0.96 12 15 7.6e-05 0.0077 17.8 2.2 1 23 634 656 634 656 0.99 13 15 4.5e-06 0.00046 21.6 1.7 3 23 664 684 662 684 0.96 14 15 1.6e-07 1.6e-05 26.2 1.6 1 23 690 712 690 712 0.99 15 15 0.00027 0.028 16.0 0.1 1 23 718 742 718 742 0.93
Sequence Information
- Coding Sequence
- ATGGCTGTCGTGGAGATGGtcaatttgaatttgaacaGTTTGTGTCGAACGTGTCTGGTGCACGGCGATAGCATGAACAATTTGGATGGGATCGTGGAAAGTGTACACATGTCGCTGAAGGAGTTATTGCTGGCGTGTTCACAGgtgaCCGACTTTAAAATAACTCCGACATTCATTTGCATTGAATGTACCGCTCAACTCATCAATGCCTACCACTTTAAAATCAAATGCGAAACAAGCGACAAAGTTCTCAACAGTTACATTAATGATGTAAAAAATTCCCCTCAATCAATGGCTATTGGCGAAAACTACAACGAAGATGTGTCACAAGACCCAATCGATATAACTGTAAATGTGGCAAATAAGGCTGTGCCACAAGAGACAGAGGttctcaaaaaaattaaatgcgaaagtgatgatgatgacgatgatgattaTTTCGATGATCATGCGGATACTAGTTACTTCGACGATACTAAACCGGACATTGACAAGGACAACAAAGATGATATTGTTGCTGCGCCCAAAAAGCGGCATCCATGTTTAATTTGCGATAAGGTATATAATCATAGAAAGTCGATGACGCGACACATGAAAAAATTTCACAGTATGGAAGAATTAGAAAGGGCCAAGGcTAATGCTTCTAAGAATAAACCGGAGATAGTCATGGGCGGTTATGGCGTAACATGCAACTTATGTGGAGAGGCGTTCGGCGAAGATGGTAAACTTCACAAGTGTAAAGAGATGATACCACGGAGAAGCCTAAGATCTAGTGGCCCCTTCACAGTTGAATCGCTCTTCTGTCAACCGAATGGACCGAAAAGAATCGAATGCAAAATCTGTTCTGTTACGCTAGCGTCCATACATAAATTGAGACAACATTTGCAAGACCATGCTACGACCACTAGCGCCCTAGTGGTAAATCTTAATCCCGATTTAAAAGCGAATCTCACACTATTAAACATACACACTATGGACGAGATTGTCGAATACATTTCAAATCGTCTTAACGAAGGCAAATTTTCCACATTCTACTCGATTATCAACGAAACGGGTAATGAAATGTCCGTAAGCGACTCTGAAACTGAATCGGATTCGGAGGATACCACCAACAACACATACCAATGTGAAATATGTTTGAAAAGCTTTGATCGACGCTATAAGATCCTATCCCATCAACAAAACGATCACACCAAGGAGGAGTTGGGATACCATTGTACGAAATGTCCATGGAAATTCGGTAATGCTCAACTTTTAGAGGATCACCTGAACTCAATGTGTGAAAATGAGGAGAAATGCTTCGAATGTGATGTGTGTAAGCTGAAGTTTATGTGGCAACACAATATGTACGCTCACAAGGTGGCTCAACATTCCCAAGTACCCGCTAAGAGTGACACCACGAAAGAAGAACAAGACAAAAGAAGGAAATATCCTTGTGATATGTGCGATAAGGTGTTCACCCGATCTAACCATATCAAACGACATAAACAAATTCATTTTAAAGTTGTCGACAAGCGCAAATATGCTTGTGATATGTGTGAAAGGGTTTTCACTCGATCTGAGCATTGCGAACGACATAAGAAAACTCATTATAAAAGTGACGAGAGACCCCAATTTGCTTGTGACGTGTGCAATAAAATGTTCCATCGGCAAGAGCATTGCGATCGGCATAGAATGAGCCATTTGCCGCCAAGTCAGAGACGATTTGGATGCGAAGTATGCAAGAAGCGTTTTAATCGCAGAGATAATTTGCGCGCGCACATGCGGAGGCACCAAGAGGACAAAGGAGAGCAGCCGGGTGAATCCGAAAACAATCATTTGTGCGCTTATTGTGGTCGTGGATTTAAGAATTCGTCGAATCTTATCGTGCACATGCGACGACACACCGGCGAAAAGCCGTATAAATGCGATCTGTGCGATATGGCTTTCCCGCGATCGTCAGATTTAACATGCCACCGGCGAACACATACGGGCGAGAAGCCGCATTTGTGCACAGTGTGCGGTAAAGGCTTTTCGCGATCCAACAAGCTGGTTCGACATTTGAGAATTCACACCGGAGTGCGTCCGTACAAATGCACCTACTGCGATCGTGCATTCACCCAGTCAAACGATCTTACGTTACACATCAGACGACATACCGGCGACAAACCATACGTTTGTGGAATATGTGGCGAACGATTCATTCAAGGAACCGCTCTGCAATCGCATCGACGTATGAGAGGACACTATGAGGATTCGGATCAAGCGGCTCCATTCGCCAGCTTGAGCATGCAAAATCCAAATCCGAATAATACACAGCAGCGTGTCAGTCGAATTGGTTCGCCGAAGAGGGAAGGCGACATGTCAGAACCCAAGCCAGTCGGCAGATCGTGTATACCGAGCTTATCTAGCTCGATAAAAGATGTTAAAAATGTGAGCGTTCTTTCCACCAATAATATTGTGCAGTCACACGAGGACAGTTCGCAAGCTTTGAATTTGGCTACTCTAACATCGGTGCCGTATTCGACAATTGCGTTTCCGGCAGGATTTCCACCTTTGcgataa
- Protein Sequence
- MAVVEMVNLNLNSLCRTCLVHGDSMNNLDGIVESVHMSLKELLLACSQVTDFKITPTFICIECTAQLINAYHFKIKCETSDKVLNSYINDVKNSPQSMAIGENYNEDVSQDPIDITVNVANKAVPQETEVLKKIKCESDDDDDDDYFDDHADTSYFDDTKPDIDKDNKDDIVAAPKKRHPCLICDKVYNHRKSMTRHMKKFHSMEELERAKANASKNKPEIVMGGYGVTCNLCGEAFGEDGKLHKCKEMIPRRSLRSSGPFTVESLFCQPNGPKRIECKICSVTLASIHKLRQHLQDHATTTSALVVNLNPDLKANLTLLNIHTMDEIVEYISNRLNEGKFSTFYSIINETGNEMSVSDSETESDSEDTTNNTYQCEICLKSFDRRYKILSHQQNDHTKEELGYHCTKCPWKFGNAQLLEDHLNSMCENEEKCFECDVCKLKFMWQHNMYAHKVAQHSQVPAKSDTTKEEQDKRRKYPCDMCDKVFTRSNHIKRHKQIHFKVVDKRKYACDMCERVFTRSEHCERHKKTHYKSDERPQFACDVCNKMFHRQEHCDRHRMSHLPPSQRRFGCEVCKKRFNRRDNLRAHMRRHQEDKGEQPGESENNHLCAYCGRGFKNSSNLIVHMRRHTGEKPYKCDLCDMAFPRSSDLTCHRRTHTGEKPHLCTVCGKGFSRSNKLVRHLRIHTGVRPYKCTYCDRAFTQSNDLTLHIRRHTGDKPYVCGICGERFIQGTALQSHRRMRGHYEDSDQAAPFASLSMQNPNPNNTQQRVSRIGSPKREGDMSEPKPVGRSCIPSLSSSIKDVKNVSVLSTNNIVQSHEDSSQALNLATLTSVPYSTIAFPAGFPPLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -