Mpol020240.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454418.1:27734825-27743121[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0069 0.7 11.6 2.0 1 21 50 70 50 71 0.94 2 20 0.13 13 7.6 1.3 1 23 182 205 182 205 0.92 3 20 1.2 1.2e+02 4.6 1.1 2 23 234 256 233 256 0.91 4 20 0.001 0.1 14.2 0.6 1 23 270 292 270 292 0.97 5 20 0.00045 0.045 15.4 4.8 1 23 298 320 298 320 0.99 6 20 0.035 3.5 9.4 1.7 1 23 363 385 363 385 0.91 7 20 7.6e-06 0.00076 20.9 0.2 1 23 393 415 393 415 0.98 8 20 3.9e-06 0.0004 21.8 0.2 1 23 513 535 513 535 0.97 9 20 0.00055 0.056 15.1 1.0 1 23 541 563 541 563 0.98 10 20 8e-06 0.00081 20.8 0.3 1 23 569 591 569 591 0.98 11 20 0.29 30 6.5 2.8 2 23 691 713 690 713 0.93 12 20 0.13 13 7.6 1.0 1 23 718 740 718 740 0.89 13 20 0.00022 0.022 16.3 6.7 1 23 746 768 746 768 0.98 14 20 2.1e-05 0.0021 19.6 4.1 1 23 774 796 774 796 0.99 15 20 0.00029 0.029 16.0 0.8 1 23 937 959 937 959 0.98 16 20 0.21 22 6.9 2.7 1 23 965 987 965 987 0.97 17 20 1.1e-06 0.00011 23.5 1.3 1 23 993 1015 993 1015 0.99 18 20 0.00062 0.063 14.9 0.3 1 20 1021 1040 1021 1041 0.97 19 20 0.00049 0.049 15.2 0.3 1 23 1050 1072 1050 1072 0.97 20 20 2.3e-06 0.00023 22.5 0.6 1 23 1078 1100 1078 1100 0.99
Sequence Information
- Coding Sequence
- ATgtcttttgaatttattgaaccCTCCTTAATCAAGGAGGAGGAAGTTTGTTTAAACGATTCTGAATTAGTCGAAAGCGACTATTGTATCGAATTCTCTACAAAGTGTGGTGAAATTTTCTTGGATCAGCAGAGGGAGTCTTTCACTTTTGTTTGTACATTTTGCCATCGACCGTTTAAGGATTTGTCCAGCTTCGGTGATCATATGCACAGTTGTAGCACACCGGCTAAGGCACAATTTGATGATCAGGTGTTTAGAGAATTCGAtgcttttaagaaaaaaagccAGGTCCAAGTGGACTCATTGGATtgtgaaaataaaaacactGAGAAGAATATTGAAAGTCCGTTGAATCTGATTGACCAGATAAAGgaagaaaattatgaagacgaaACACAATACTCGAACGACGAGCCGCCCCATTTCGAAGAGGTATCACTACAAGCTGAATCGGTTGATGAATCACTGCAAGCCTCAAGTTCCCAAATGTCTAaatctgaaaaaatgaaaaagaagtACTTCAAGTCGATGGACAACAGAATGTTCTGTTGCTTCTCGTGTGGTCAACTCTTCGCCGTAAAGGTGTCCCTTCGTAATCACTACCTTGCCGAACATCCCGATATGATTGAAAAGGATGACATTATCAAACGGGGAGCTTGCAAGATATATGAATTTGTTCCTAAAGTACCCAGCCAGATGTCGTGTGGAATTTGCCTGAAAACTTTTCACGAACCAACCGCATATCATTCCCACGTGGAGTATGATCATATTGACAAAAATATCGCTCCGCACACGGCCGACAGACCGTTTAGGTGTGATATTTGCGATCGAAgatttaaattgcgaaaaatCTTACAGGCTCACATAATGTTGCATGAAGACAAAAAAACGTTTCAGTGTAATGTTTGTTcgaaaaattttgaacattACGACACCTGGCATGCACACATGAAAACTCATAGACGAGTGGAGTCTGAAGCAACATCACCGTTAGAGACGGAGAGTCAAGTCAATGAGAGTCAACCAAAAGAGCCCCTAAAACCAAAAGAGCAGGAAAAAGAAACACTCGACACTCCCGACAGACCGTTTCGCTGTGATGTTTGTCAAAAAAGTTTCAAATTACGAAAAATATTAAATGCTCACAAGTTTCTGCATTTGGACAAGAAAAATTTCGAGTTCGAATGTAAAGTGTGTGGGAAAATGTTTGCACAGTATGCTGGCTTGTACGGACATATGAGGAGTCACAGAAGGATTGAGTATGTAGTTAAACTAAAAGCATCAGAGGAACTGAATCAGTCGAATCTGAAAGAGGCCGATGAACTGAAACATGAAGAAAATGAAACTCTTGATATGATGAAAGATGACTCGCAACACATTGAGAACAAATTTCCACCGACAGAATCAAATACAATGGAAACCAGTGCAAAAAAGATCGAATCCAGTAAAAATGAAACCGAAATAGAGACGGGTGAACAAATGCAAAATAAATCAACCACACACTCACAAAATCAGTCGAATGATAAAAACCTCAAGACTCATGTCTGTCCAGAGTGTGATAGAGCTTTCGTTTCTTATGGCAATTTGAAGGCCCACTTGGTTACGCATTCGAATGAGAGACCGTTTAGCTGTGATatttgcaatagaaaatttaaaatgaaaaggatTTTGAAGGCCCACATGTTGATACATTTGGACAAGAAAAAGTTTGAGTGCAAAGTGTGTTGGCGAACGTTTGCACAGTATTCCGGCTTGTATGCACATATGAAGATACACGACGAGGTCGAGGTTGTACTGACACAGGGGGAAAAGgagGACATTGACGAACAGTCAAATCTGAAGGAACCCACCAAACTAAATGATGAACTACTGGATACGAAGAATGACCCACCCAACAAATCCGTTGCCAATAAAACATTTTGCTGCTACTCCTGTGGACGACTGTTCGCAGCAAAGCTATCGTACCGGAATCACTATTTCGCTCATCATCCCGATATGATTGAAAAAGATGACATTGTCCAACGGGGACCTCTAAAGACTTTCGAATTTGTTCCCAAATTACCCAGCGAGATGTCATGCGGATATTGCCTGAAAACCTTCCACGAACCAAAAACTTATCACTCTCACATGGAGTTGGATCACATCGACAAAATATACTCTTGCGATATTTGCCCAGCGACATTCACAAAATCCTGTGAACGGGACTCTCACTTGGATGAACACGATGAAAGACAACTTCACCAATGTTCACATTGTGACAAGAAATTTGGCCGACTCAAACACTTGCAAATTCACGAACGCATTCACACGAAGATGAAATCCTATCAGTGCGACTATTGTGACCAATCATTTAAGTCGGAAATCAAATTTAAGCGTCATCGGCGCAAGCATAACAATCTGATTCTCAATCTGACGGAAACATCCTCACAAGAACCCAAACCCAGTGAGAGTACGGTTGAAGAACAAAACAAAGTCGGTCCAGAGGAGACGTTTTGCTGTTTATCCTGCTGCAAACTATTCATCACGAAACAGTTGTTTCGCAATCACTACTATACTCATCATCCCGACATGATTGAAAAGGACGAAATCGTCGATCAGGGAGACAGTAAGGTTCATGTATTTGTTCCTAAAGTGCCCAGCGAAATGTTGTGTCGCTTTTGCTTGAAAAAATTTCACGAACCCACCACTTATCAGACCCACGTAGAGTGCGACCACATCACGAAAAGATACTCATGCGATCGTTGTCCGGCAACATTTAAGTGTGGTCGCGACAGAGACTATCACTTGAATGTCCATGAGGGTAAAAAACCTTTCCAATGTCCTCATTGTCCGGCGAAATTTGCAAATCCCCAAAATCGAAGTAATCACATTCAAAATCATTTGAACAAGGACAAATTCATTTGTCGTTTCTGCAAGTGGAAATTTGCCCGAAAAGTCGACTGCCGAATTCACGAGCGTATTCATACGAACGAGAAACCGTATCAGTGCGAAGAATGCGGGGAAGCATTTATTTCGCGATCCCGATTGACGCATCATCAGCGAATGCATAAAAACATCAGGAAATACAAATGTACACAGTGTGATAAGGCGTTCTTTGCGTTATCCACGTTGAAGGCCCACATCACGTGTGCGCACACGACAGAGCGTCCGTTTAGCTGTAGTGTGTGTGACCGGAAATTTCGAGCGCAACCGGCCTTGCGCGCTCACAAGATGTTACATCTGGGCAAGAAAACGTTCAAGTGTAAATTGTGTGGAAAAATGTTTGCACAGTATGCCGGTCTGTATGCACATATGAAGTCTCACAATGAGGTTGAGTAG
- Protein Sequence
- MSFEFIEPSLIKEEEVCLNDSELVESDYCIEFSTKCGEIFLDQQRESFTFVCTFCHRPFKDLSSFGDHMHSCSTPAKAQFDDQVFREFDAFKKKSQVQVDSLDCENKNTEKNIESPLNLIDQIKEENYEDETQYSNDEPPHFEEVSLQAESVDESLQASSSQMSKSEKMKKKYFKSMDNRMFCCFSCGQLFAVKVSLRNHYLAEHPDMIEKDDIIKRGACKIYEFVPKVPSQMSCGICLKTFHEPTAYHSHVEYDHIDKNIAPHTADRPFRCDICDRRFKLRKILQAHIMLHEDKKTFQCNVCSKNFEHYDTWHAHMKTHRRVESEATSPLETESQVNESQPKEPLKPKEQEKETLDTPDRPFRCDVCQKSFKLRKILNAHKFLHLDKKNFEFECKVCGKMFAQYAGLYGHMRSHRRIEYVVKLKASEELNQSNLKEADELKHEENETLDMMKDDSQHIENKFPPTESNTMETSAKKIESSKNETEIETGEQMQNKSTTHSQNQSNDKNLKTHVCPECDRAFVSYGNLKAHLVTHSNERPFSCDICNRKFKMKRILKAHMLIHLDKKKFECKVCWRTFAQYSGLYAHMKIHDEVEVVLTQGEKEDIDEQSNLKEPTKLNDELLDTKNDPPNKSVANKTFCCYSCGRLFAAKLSYRNHYFAHHPDMIEKDDIVQRGPLKTFEFVPKLPSEMSCGYCLKTFHEPKTYHSHMELDHIDKIYSCDICPATFTKSCERDSHLDEHDERQLHQCSHCDKKFGRLKHLQIHERIHTKMKSYQCDYCDQSFKSEIKFKRHRRKHNNLILNLTETSSQEPKPSESTVEEQNKVGPEETFCCLSCCKLFITKQLFRNHYYTHHPDMIEKDEIVDQGDSKVHVFVPKVPSEMLCRFCLKKFHEPTTYQTHVECDHITKRYSCDRCPATFKCGRDRDYHLNVHEGKKPFQCPHCPAKFANPQNRSNHIQNHLNKDKFICRFCKWKFARKVDCRIHERIHTNEKPYQCEECGEAFISRSRLTHHQRMHKNIRKYKCTQCDKAFFALSTLKAHITCAHTTERPFSCSVCDRKFRAQPALRAHKMLHLGKKTFKCKLCGKMFAQYAGLYAHMKSHNEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -