Mpol023215.1
Basic Information
- Insect
- Microchrysa polita
- Gene Symbol
- -
- Assembly
- GCA_949715475.1
- Location
- OX454418.1:90745634-90774071[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0012 0.12 14.0 1.8 1 23 17 39 17 39 0.97 2 26 7.7e-05 0.0078 17.8 0.7 1 23 45 67 45 67 0.94 3 26 0.013 1.3 10.8 0.4 3 21 75 93 73 94 0.94 4 26 1.3 1.4e+02 4.4 0.2 1 20 302 321 302 325 0.89 5 26 0.00052 0.053 15.1 0.4 1 20 368 387 368 389 0.93 6 26 0.00062 0.063 14.9 1.7 1 23 396 418 396 418 0.96 7 26 2.2e-05 0.0022 19.5 1.1 1 23 424 446 424 446 0.94 8 26 0.062 6.3 8.6 0.9 3 23 456 477 454 477 0.97 9 26 4.4e-05 0.0045 18.5 0.2 1 20 484 503 484 505 0.94 10 26 0.001 0.1 14.2 1.7 1 23 515 538 515 538 0.97 11 26 0.0003 0.03 15.9 0.3 1 21 545 565 545 566 0.94 12 26 4.3e-05 0.0043 18.6 1.6 1 23 576 598 576 598 0.97 13 26 5.2e-05 0.0053 18.3 0.6 1 23 604 626 604 626 0.98 14 26 0.0051 0.51 12.0 2.5 1 23 637 660 637 660 0.97 15 26 0.01 1 11.1 0.2 1 23 695 717 695 717 0.90 16 26 0.007 0.71 11.6 0.6 3 21 725 743 723 744 0.94 17 26 0.0077 0.78 11.5 0.4 1 21 934 954 934 957 0.91 18 26 9.9e-05 0.01 17.4 0.6 1 20 1000 1019 1000 1021 0.93 19 26 0.00033 0.034 15.8 1.1 1 23 1028 1050 1028 1050 0.96 20 26 4.2e-05 0.0042 18.6 2.2 1 23 1056 1078 1056 1078 0.94 21 26 1.8 1.8e+02 4.0 0.2 3 23 1088 1109 1086 1109 0.96 22 26 4.4e-05 0.0045 18.5 0.2 1 20 1116 1135 1116 1137 0.94 23 26 0.00044 0.044 15.4 0.3 1 23 1147 1170 1147 1170 0.97 24 26 0.00017 0.017 16.7 0.3 1 21 1177 1197 1177 1198 0.95 25 26 2.5e-05 0.0025 19.3 1.7 1 23 1208 1230 1208 1230 0.97 26 26 3.2e-05 0.0032 19.0 1.9 1 23 1236 1258 1236 1258 0.99
Sequence Information
- Coding Sequence
- ATGGGGTCACTATCCAATCATCAAAAAGCACATGAAGGCGTGCTAAATTTTTGTTGTAGCTTCTGTGGAAAGGGCTTTCTTAATAAGGGTCAACTGCAAGTGCATGAACGCATACATACTAATGAGAAGCCCTTCAAATGCAATGTTTGCGGCAAATCATTCGCGTTCAGTGAAAGCCTTGTGACACATTCAACACTCCATACTGGCATCAAACCGTACGGCTGCGATAATTGTGGAAAGACATTTTCGTGTATAGGAAATTTGATGGCGCATCGGCGTGTACGTAAGGACACATGCGGCGCTGTTCCTTATTCGAGGAAAACCACTCGTATTGCTCAGAGACACAAAGCCAGACCAAAAAGAGATTATTACGCCGACCAGGTTGCAGAGAAAGTTGGGCTACCTACCGTAAAAGCTGTTCCGTCCAACTCTTTAGCCGTTGGCATAAATGTCAAAGATAGTGCGCATCTTGACGAGGAATATCTCGAAAACATGGATGACGAAAGTATTACAAATACAGATTCGAAGGATGGAGTGTTGGCTCAACCGTTTGAAGtggacgatgatgatgatgagtctTTGGCGGAAGCTGGCTGTTCGTATGAAGACGATCCATTGGACACAACCTACGACGAAATTTCTGAGCAACATATGGACTATTTACTGAAAGGCAATGCAAATATTGACGAAAAACTGACGGATGATAAAGCTTCAACCCTGGCTGAAATCGCTGAATATAAATTTGAATCAGTAGACGAGAAGAACTTCCAAGACGGCGTTACTTTGCAAGAGGATGCAATTATAAAATTCGAGATTGATACTGAAAATTCCGGATTGAATCTAAAGGCAGAGGAATTTGCATATTCTACAATAAACAACGTGATAGAGGATATAGAAGAAAGTTATAAATGCACGATGTGCGTATCCACTTTTAAAATAGAGAAGTTACTGTTGGATCATGTAGTTGATATACACAACCTCACGGATGATGCTGTTTATGTTTCGGAGCCTCAACAAAAACTACAAGTCTCAACGCTCTCAAAACGAAGCCCAAGAACGAAATCCAACGACAAAATTATCACCAGTTCGGATAAGGGAAGCTTCGAATGTAAGAAATGCAAGAAAAGCTATATCACTCGAGTAGCACTTAAGAATCACGAAGCGACAAATTGTGGTACAGCGCGGTTCAATTGTGAAAAGTGCGATAAAACATATCATAGTCGTGGGGCGCTGAAAATGCACCAAGTTGTACATTCCGGCAAATTGCCCTTCATGTGTTCACTTTGTGGAAAAACCTTTGCAACTAAATCACAACTTGTCCAGCACGATAGAAAGCATACAAATCCCAAACGTCATaaatacGGTTGTCCCATATGCAAATTGAATTGTAAGGCACAGAAAACTTTGGACGCTCATCTCCGCAAAGTTCATGGTGCCAACGCTGAACTTTACATATGTGAAATATgcggtaaaaaatataaaaacaagcaGAGTCTAAACAACCATGTCGAATCTTCTTGTGGCACAAAAAGAACCAAGAATTTCCCGTGCAACAAATGCGAGCAAATTTTTGAGACAAAACACAGTTTGGACACTCATCTCCAGAAAGTTCATGATGTCAAAGTTGAACTTTATGCGTGCGAAAAATGCGGTAAAACTTATCAGCAGAAACAGAGTCTAAAGATCCATGTCCAGTCGTCTTGTGGCACAATAAAATCAAAGGAGTTCCAGTGCAACGTTTGTAACAAATACTTTGCTCATCAGGGATCGCTATCCAATCACCTAAATGCGCATGAAGGCGTACTTAGCTTTCGTTGTAGATATTGTGGAAAGGCATTTCTCAATAAGGGTCAGCTGCAAGTGCACGAACGAATACATACTAATGAGAAGCCATACAAATGCGATGTTTTTCGTTGCGAGATATGCAAACAAATTTGTGAGACAAAATATAGTTTGGACACTCATCTCCAGAGAGAGCATGGCATCAACACTAAAGTTTACGTATGTGAAAAATGGGGTAAAACTTATCAACTGAAACAGAGTCCAAAGGATCATGAACGCATACATACTAATGAGAAGCCCTTCAAATGCAATGTTTGCGGCGAATCATTCGCGTTCATTGAAAGTCTTGGGACGCATTCAACACTCCATGCTGGCATCAAACCGTACGGCTGCGATAATTGTGGAAAGACATTTTCGTGTACAGGAAATTTGATGGCGCATCGACGTGTACGTAAGGACACATGCGGCGCTGTTGCTTATTCTAGGAAAACCACTAGTATTGCTCAGAGACTTAGATCCAGACCAAAAAACGATTATTACGCCGACCAGGCAGATAAAGTTGTTCCGTCCAACTCATTAGCCGTTGGCATAAATGGGGATATCGAAAACATTGATAACGAAAGTATTACAAATACAGATTCGAAGGATGGAGTGTTGGCTCAACAGTTTGAAGTGGACGATGATGATGCGTCTTCTACTGAAGCTGGCTCTTCGTATGAAGACGATCCATTGGACACAACCTACGACAAAATATCCGTGCAACATATGGACTATTTACTGAAAGGCAATGCAAATATTGAGGAAAAACTTTCGGATGATAAAGCTTCAACCCTGGCTGAAATCGCTGAATATAAATTTGAATCAGTAGACGAGAAGAACTTCCAAGACGACGTTACTTTGCAAGACGATGCAATTATAAAATTCGAGATTGATACTGAACATTCCGGATTGAATCTAAAGGCGGAGGATTTTGCATATTCTTCAATAAACAACGTGACACAGGGAATAGAAGAAAGTTACAAATGCACAATGTGCGAATCCACTTTTAAGACAGAGAAGTTACTGTTGGATCATTTAGTTGATATACACAACCTCACGGATGATGCTGTTTATGTTCCGGAGCCTCAACAAAAACTGCAAGTCTCAACGCCCTCAAAACGAAGCCCAAGAACGAATTCCAAGGACAAAATTGTCACCAGTAGCGATAAGGGAAGCTTCGAATGTAAGAAATGCAAGAAAAGCTATATCACTCGATCAGCACTTAAGAATCACGAAGCGACAAATTGTGGTACAGCTCGGTTCAATTGTGAAAAGTGCGATAAAACATATCATAGTCGTGGCGCGCTGCAAATACATCAAGTTGTACATTCCGACAAATTGCCCTTCATGTGTTCACATTGTGGAAAAACCTTTgccactaaagcacaacttgtCCAGCACGATCGAAAGCATACAAATCCCAAACGTCAAaaatacGGTTGTCCCATATGCGAATTGAATTGTAAGGCACAGAGCATTTTGGACGCTCATCTCCGGAAAGTTCATGGTGCCAACGCTGATCTTTACATATGTGAAATATgcggtaaaaaatataaaaacaagcaGAGTCTAAACAACCATGTCGAATCTTCTTGTGGCACAAAGAGAACCAAGAATTTCCCATGCAATAATTGCGAGCAAATTTTTGAGACAAAATACAGTTTGGACGCCCATCTCCAGAAAGTTCATGATGTCAAAGTTGAACTTTATGCGTGCGAAAAATGCGGTAAAACTTATAAACTGAAACAGAGTCTAAAGATCCATATCCAGTCGTCTTGTGGCACAATAAAATCTACGGAGTTCCAGTGCAACATTTGCAACAAATACTTTGCTCATCAGGGATCGCTATCCAATCACCTAAATGGACATGAAGGCGTGCTTAGCTTTCGTTGTAGCTTTTGTGGAAAGGGTTTTCTCAATAAGTATCAGCTGCAAGTGCACCAACGAATGCATACTAATGAGAAGCCATACAAATGTGATGTAAGTTTCAAAGAACATCCCATAACATATAGGATACTAtgctaa
- Protein Sequence
- MGSLSNHQKAHEGVLNFCCSFCGKGFLNKGQLQVHERIHTNEKPFKCNVCGKSFAFSESLVTHSTLHTGIKPYGCDNCGKTFSCIGNLMAHRRVRKDTCGAVPYSRKTTRIAQRHKARPKRDYYADQVAEKVGLPTVKAVPSNSLAVGINVKDSAHLDEEYLENMDDESITNTDSKDGVLAQPFEVDDDDDESLAEAGCSYEDDPLDTTYDEISEQHMDYLLKGNANIDEKLTDDKASTLAEIAEYKFESVDEKNFQDGVTLQEDAIIKFEIDTENSGLNLKAEEFAYSTINNVIEDIEESYKCTMCVSTFKIEKLLLDHVVDIHNLTDDAVYVSEPQQKLQVSTLSKRSPRTKSNDKIITSSDKGSFECKKCKKSYITRVALKNHEATNCGTARFNCEKCDKTYHSRGALKMHQVVHSGKLPFMCSLCGKTFATKSQLVQHDRKHTNPKRHKYGCPICKLNCKAQKTLDAHLRKVHGANAELYICEICGKKYKNKQSLNNHVESSCGTKRTKNFPCNKCEQIFETKHSLDTHLQKVHDVKVELYACEKCGKTYQQKQSLKIHVQSSCGTIKSKEFQCNVCNKYFAHQGSLSNHLNAHEGVLSFRCRYCGKAFLNKGQLQVHERIHTNEKPYKCDVFRCEICKQICETKYSLDTHLQREHGINTKVYVCEKWGKTYQLKQSPKDHERIHTNEKPFKCNVCGESFAFIESLGTHSTLHAGIKPYGCDNCGKTFSCTGNLMAHRRVRKDTCGAVAYSRKTTSIAQRLRSRPKNDYYADQADKVVPSNSLAVGINGDIENIDNESITNTDSKDGVLAQQFEVDDDDASSTEAGSSYEDDPLDTTYDKISVQHMDYLLKGNANIEEKLSDDKASTLAEIAEYKFESVDEKNFQDDVTLQDDAIIKFEIDTEHSGLNLKAEDFAYSSINNVTQGIEESYKCTMCESTFKTEKLLLDHLVDIHNLTDDAVYVPEPQQKLQVSTPSKRSPRTNSKDKIVTSSDKGSFECKKCKKSYITRSALKNHEATNCGTARFNCEKCDKTYHSRGALQIHQVVHSDKLPFMCSHCGKTFATKAQLVQHDRKHTNPKRQKYGCPICELNCKAQSILDAHLRKVHGANADLYICEICGKKYKNKQSLNNHVESSCGTKRTKNFPCNNCEQIFETKYSLDAHLQKVHDVKVELYACEKCGKTYKLKQSLKIHIQSSCGTIKSTEFQCNICNKYFAHQGSLSNHLNGHEGVLSFRCSFCGKGFLNKYQLQVHQRMHTNEKPYKCDVSFKEHPITYRILC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -