Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4.3e-13 5.3e-10 40.0 0.2 4 44 91 131 88 131 0.92

2 3 0.13 1.6e+02 3.2 0.0 28 38 161 171 154 177 0.90

3 3 1.1e-16 1.4e-13 51.4 0.0 2 41 195 233 194 237 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4.3e-13	5.3e-10	40.0	0.2	4	44	91	131	88	131	0.92
2	3	0.13	1.6e+02	3.2	0.0	28	38	161	171	154	177	0.90
3	3	1.1e-16	1.4e-13	51.4	0.0	2	41	195	233	194	237	0.95

Coding Sequence: ATGCATTCGGAAAAGGACATGGAATATCTGGAAGTCTACAGCTCGCACGCACAATACACAATTGAACAGCCCAGCAGCGACTACATTCTAGCCGAAAGTTCCGAGCCAACATTCGTTCTACCAGTGGACAAATGTGAACAAGAAACAATCACCAACGACGATCCGGACACGGCCGAAACATCCGGAATACAAGagggaaaatttaaaattatcaaAACCGAAAAGATTTTCAAACCCGACAATCTTCCGGACTACACTTCGCGTAGTGCAGCTTTTGAAGCGGCCGCCCAAGAGGTGCTAAATATGGGCGTAAGCTTGCAAAAGGCTGCAACCAAATATAATATCTCCAAAACAGTTTTATGGCGTCGTGTACGCAAGAGTACCGACTATAAAATTGAACGTGAACATCCAATGCTAAAGACTGCCATCGCGATGCTAGAAAGTGGTGAATCATTGAAGACAATCAGTCAGGCTATTAAAATACCAATATCGACATTGCATCGACATAAAGTGCGTCTATTGGAAGAGGGTCGGCTGCCGGAACATGTTCGTATTAAACGACGCGACTCGAAAGATAATCTTCGTGAACGGATTACAGAAGCGATAAATGCTTGTGCGCGTGGTATGTCACAAAATCAGGCTTCCGCCTTGTATTCGGTGCCAAAATCAACATTGTGGCGTCATTTACAGAAACACACTTGTCCGATGCAAGTGACTATTGACAATCAGATTGTTGACGATATATCGCCATCTATAAATATAGTTTCAACTCAAAGTGATGACATTGTTGTTCCCAAAGAAGAATGTACTAAATTGTATTCGTGA
Protein Sequence: MHSEKDMEYLEVYSSHAQYTIEQPSSDYILAESSEPTFVLPVDKCEQETITNDDPDTAETSGIQEGKFKIIKTEKIFKPDNLPDYTSRSAAFEAAAQEVLNMGVSLQKAATKYNISKTVLWRRVRKSTDYKIEREHPMLKTAIAMLESGESLKTISQAIKIPISTLHRHKVRLLEEGRLPEHVRIKRRDSKDNLRERITEAINACARGMSQNQASALYSVPKSTLWRHLQKHTCPMQVTIDNQIVDDISPSINIVSTQSDDIVVPKEECTKLYS

Sequence clustering based on sequence similarity using MMseqs2