Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 5.9e-11 7.4e-08 33.1 0.0 2 39 108 146 107 150 0.90

2 4 2.2e-13 2.7e-10 40.9 0.1 2 39 162 199 161 202 0.94

3 4 2.5e-18 3.1e-15 56.7 0.0 1 45 216 261 216 261 0.97

4 4 3.1e-18 3.8e-15 56.5 0.0 1 42 268 310 268 312 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	5.9e-11	7.4e-08	33.1	0.0	2	39	108	146	107	150	0.90
2	4	2.2e-13	2.7e-10	40.9	0.1	2	39	162	199	161	202	0.94
3	4	2.5e-18	3.1e-15	56.7	0.0	1	45	216	261	216	261	0.97
4	4	3.1e-18	3.8e-15	56.5	0.0	1	42	268	310	268	312	0.96

Coding Sequence: ATGAGAGCAAGGGAAGATACCCGTCATTTCATTGGTATCTGTCCCGTACTAAAGGAAACTAGGCGATCGTGTACTGGGAAAGATTACCTGAACGAGCAAGAAGTCAACGACCTGCTGAATGGATCGAATTGGGAGACCCTATATGAATATTGCAGAATCGCTCTGAACTATCGAAACCGAATATTAACTGataTCTACAACTCCGATACTAGCGAAGATTCTATGATGATTGGCAATCGTTCTGTTAATGAAAGCGATGGACCTCAGTATACAAACCTAGATCAAccagatattaaatttattgggCCGAAAACATGGACAACTGAAGATATGACCTCTGCATTAGAAGCATTGAAAAGTCATGATATGAGTTTAACGAAAGCTTCCATTACTTATGGCATACCATCTACTACGTTATGGCAGCGAGCTCATCGCTTGGGTATTGATACGCCCAAGAAAGAAGGAACTACAAAGTCATGGAATGAAGAATCATTGAATAATGCGCTCGAGGCTTTGAGGACAGGACAAATATCGGCGAATAAGGCATCAAAAACTTATGGTATTCCATCTTCAACTTTATACAAAATTGCACGTCGGGAAGGTATTCGGCTCGCCGCACCTTTCAATGCGGCGCCGACTGCCTGGACTCCTGATGATTTGGAAAGAGCTTTGGAAGCTATCCGATCAGGTGTAACCTCCGTACAGAAGGCTAGCAGCGAATTTGGCATTCCTACaggcacaTTGTACGGAAGGTGTAAACGAGAAGGAATTGGACTATCAAGATCAAACCCAACTCCATGGTCTGAAGATGCTATGAACGAAGCTCTTGTTGCTGTAagAGTTGGCCACATGTCCATCAATCAAGCTGCTATACATTATAATCTACCGTACAGTTCACTTTATGGGCGGTTCAAGCGGGGTAAATATGACTCAACATCTACTCTAATGCCAGGAAACCACACAGAATCTAGTAATAATGTTGATATAACAGAAAATAGCTTGGAGACCTCGGTATAA
Protein Sequence: MRAREDTRHFIGICPVLKETRRSCTGKDYLNEQEVNDLLNGSNWETLYEYCRIALNYRNRILTDIYNSDTSEDSMMIGNRSVNESDGPQYTNLDQPDIKFIGPKTWTTEDMTSALEALKSHDMSLTKASITYGIPSTTLWQRAHRLGIDTPKKEGTTKSWNEESLNNALEALRTGQISANKASKTYGIPSSTLYKIARREGIRLAAPFNAAPTAWTPDDLERALEAIRSGVTSVQKASSEFGIPTGTLYGRCKREGIGLSRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDSTSTLMPGNHTESSNNVDITENSLETSV

Sequence clustering based on sequence similarity using MMseqs2