Mdis009728.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010000440.1:2512615-2522792[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.32 64 5.7 0.9 2 21 620 639 619 644 0.92 2 9 6.2 1.2e+03 1.6 0.3 1 20 656 675 656 677 0.89 3 9 0.00033 0.067 15.1 1.5 1 23 709 731 709 731 0.98 4 9 7.1e-05 0.014 17.2 1.0 2 23 738 759 737 759 0.95 5 9 7.9 1.6e+03 1.3 0.2 1 23 798 821 798 821 0.91 6 9 8.6e-05 0.017 16.9 4.0 1 23 827 849 827 849 0.98 7 9 0.32 63 5.7 2.0 1 23 855 878 855 878 0.94 8 9 6.3e-05 0.013 17.3 1.7 2 23 885 907 884 907 0.96 9 9 0.001 0.21 13.5 0.8 1 23 913 936 913 936 0.97
Sequence Information
- Coding Sequence
- ATGGCAAAAAGTGAAACATTGAAAACTTTTAGAAAACCAGGGAAAAAGAAGTTACTATTCAACAAACGTGAAAATTTAGAGGAAAAATCCGGTTTTAACTCGACAAACAATCAACTCACCTATGAAACTTGTGATAAAGAGGAAACGAAACGATTACAATCAGATATTGCTGTTTATCGGTCAAATATTCCAGATACGGAAGCCatgaaaaaagttgaattttctTTTATGGGTGAGAAAAATGTACCACTCAAGAAAAGAAAAGGCTTGAAATGGTGTTCTAATAGAGATAATGCTGAAGTGTACAATCATTGCTTGGATTCTCCGAAACCACTGGTTATTGATGAAACCGAATTCGCTTCTCAACGAAATGAAGAACTTATTGAAAATTATGCAGgaaaatggaaaaatttcGACGAAAGACTTTTTTTTGATGACGTTCATAAGATTTTAACAATCCACACTATGCAAGTCTCAAACAGATCAAACGATGTAACTGAAGAAGTACCTgtatattttaaggataacgaAGTGGGAAATGAGGTTACAATCGAAAACGTCGAACTGACTGATCATATTAAATGTTCGGAATCCACTCCGGAAAAcGCAGCGAATTCAAGACCGTTATCTTCATCAGAATACGATCAAGTGCAACCGAATAAAACTCATATCGAGGCTGAATCACGCTCATTACATTTTGCGGGTGATAATCCTTCGGAACTTCGTTCCTGCCCATCGAATTTATCGAATGAAGTTCTCGTAGCTCCTGCAGAATTTGAATTACTCCCACCAGATCCGATGGAAGATGTTGGATTCATCTCGTATACGCCGAATTACGGAGATATTCTTTTGGAACTTACAGCGTGCTTGAAAGGTATTGAAGCGGGTAAGCCTGTTGCCGATTTCATTTCGAGGGACAAGAGTGTAGATATTTtatcatctttgaaaaatgatgAATGCGATAAGCTTTCAAAGAGGGCAGGTATTGGAAATATTGGTTTAAACAATGAGGTACAAGACGGTTGTCAGGATTGTCGGGAATTATATAAATCATCAcatgaagatgaaattttcagagatGATGGTGAAAATAGCCATTCAATTGATGCTACAGGAAATGAAGAACGTAATAAAACTCAACATGAACTCGAAGAGTCAATCGAAATAAGTAAAAATGATAaagataaaaaaaatgacgAAGATAAAATAAGTCAAATACCATCAAGTAAAAAAGGGcatacaaatgatgaaactgttATTATACCAACGAAAAAGATCAGAATAACACTAAATTCAGACGAAGATAATCATATAACAAACGAAACAGTTCAAAATAACACATCTAAagaaaatgataaaattttagaaaatccGTATAAATGTAAAACTGTGCGAAAATCTCCAGAGAAACACAACGATGATCCAAACAAAAACTCCCTACGAATAAGAAAAGAGTGCCAAATGTTCAATTTTTCCGGACGGAACTTACTAAACCCATCGAAAATTTTCCATACACCTCCGGACGTCGTTCCCTTACCGGACCTATTAACTCGTCCAGTGTCACGTCTGGATGAGTCAAGTGACGTTCCTAACGTGATCAGAATCGAAAAAAGCCCCCCCAAATTGATAAACAACGGCGAACCTCTCAGAAATGACATTTTCAGCAAATTTTCAGCATCGAGAAATCTATCGAAATTCGTGCAGAAAGAAGAGGACTCCAACGATGAATCTGTTTGGGACGGTGATGTCAAAGCAGATGTGAaagTGGAGCCAGAACCCATGGAAATCGAAGTTGTCCATTACAAAAAGGACCGTATCCCGAATAATTTGAGCCCGTTGTCAAAACCGAAAAGGAAATACTGTCCGTTCTGCAACGTGGGCTACACAAACGAAGTGGCCCTCGGAAGGCATCTAACACGATGCAAAATGCACCCGAAAAATCTGAAAGACGACCCTACCAAAGTGTTCCTTTGCAAATTTTGCAACTTGGGCATCACCGACGAAGTATATTTCAAGCAACACGAGGAAAAGTGCCAAAAGGAATTTTTGTACAAGCAGAATAGCAGaatttttccaACGTTGGATGAGAGTGTTATGAATTCGTTCATCAAGGAGAAACAAAGGTATAGTTGTCCGAATTGCGATTACACATCGAAGAACGTGGGACACATGAAAGTGCATAGGAGGATCCACAGCAAAGTATTCTTGTGTATCTGTGACGTATGTCAGAAGGGTTTCAACAGACTGGATGCTTTGCAAATTCATATGTTCAGGCATATCGACGTTGCAGAGAATGTCGAGGAGTTGGAGAAAGTTAAAGTGCAGAACGATAACGCATATAAAAGCACCTTATCGGTGATTATAAACAAGAAAACATATAAAGTGTACAAATACGCTTGTGTGAAATGCAGTTATGTAACACCGGTCGGGGAAAGCATGGATAAACACTTTAAAACCATGCATTTGAGTACGCCAAAGTTCCATTGCAACATCTGCGGGTTCAGCACTAAACTTAAATCGAATTTGAAACAACACCTGAATCGACACTTGAGAGTTAAAACGCACAAGTGTTCGTTCTGTCCTTACGAAACGGTAAGCACGAGTTACATAAGAAAGCACGAGAATCAGGTACATTTAAAGAAAGTTGTCACCAAATGCGAGGTTTGTGATTTCTCTACTTATCATAAAGACAATCTCAAGATCCATATGAATAGTGCTCATATTAAATCCGTCAAATATTCTTGTGATAAATGCAGTTATTCATCGTATATGAACTCGAACCTGATTAATCATGTTAAGTCAGTTCATGAGGGTAAGAAGAGgaggaaaaaacaaaaaaaatga
- Protein Sequence
- MAKSETLKTFRKPGKKKLLFNKRENLEEKSGFNSTNNQLTYETCDKEETKRLQSDIAVYRSNIPDTEAMKKVEFSFMGEKNVPLKKRKGLKWCSNRDNAEVYNHCLDSPKPLVIDETEFASQRNEELIENYAGKWKNFDERLFFDDVHKILTIHTMQVSNRSNDVTEEVPVYFKDNEVGNEVTIENVELTDHIKCSESTPENAANSRPLSSSEYDQVQPNKTHIEAESRSLHFAGDNPSELRSCPSNLSNEVLVAPAEFELLPPDPMEDVGFISYTPNYGDILLELTACLKGIEAGKPVADFISRDKSVDILSSLKNDECDKLSKRAGIGNIGLNNEVQDGCQDCRELYKSSHEDEIFRDDGENSHSIDATGNEERNKTQHELEESIEISKNDKDKKNDEDKISQIPSSKKGHTNDETVIIPTKKIRITLNSDEDNHITNETVQNNTSKENDKILENPYKCKTVRKSPEKHNDDPNKNSLRIRKECQMFNFSGRNLLNPSKIFHTPPDVVPLPDLLTRPVSRLDESSDVPNVIRIEKSPPKLINNGEPLRNDIFSKFSASRNLSKFVQKEEDSNDESVWDGDVKADVKVEPEPMEIEVVHYKKDRIPNNLSPLSKPKRKYCPFCNVGYTNEVALGRHLTRCKMHPKNLKDDPTKVFLCKFCNLGITDEVYFKQHEEKCQKEFLYKQNSRIFPTLDESVMNSFIKEKQRYSCPNCDYTSKNVGHMKVHRRIHSKVFLCICDVCQKGFNRLDALQIHMFRHIDVAENVEELEKVKVQNDNAYKSTLSVIINKKTYKVYKYACVKCSYVTPVGESMDKHFKTMHLSTPKFHCNICGFSTKLKSNLKQHLNRHLRVKTHKCSFCPYETVSTSYIRKHENQVHLKKVVTKCEVCDFSTYHKDNLKIHMNSAHIKSVKYSCDKCSYSSYMNSNLINHVKSVHEGKKRRKKQKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -