Basic Information

Insect: Micraspis discolor
Gene Symbol: Prdm1
Assembly: GCA_030674115.1
Location: JARTUT010001746.1:562892-586381[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.6e-07 3.2e-05 25.5 0.8 1 23 841 863 841 863 0.99

2 5 8.2e-06 0.0016 20.1 5.1 1 23 869 891 869 891 0.98

3 5 5.6e-07 0.00011 23.8 4.4 1 23 897 919 897 919 0.97

4 5 0.0056 1.1 11.2 4.7 1 23 925 947 925 947 0.98

5 5 0.0032 0.63 12.0 0.1 1 21 953 973 953 974 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.6e-07	3.2e-05	25.5	0.8	1	23	841	863	841	863	0.99
2	5	8.2e-06	0.0016	20.1	5.1	1	23	869	891	869	891	0.98
3	5	5.6e-07	0.00011	23.8	4.4	1	23	897	919	897	919	0.97
4	5	0.0056	1.1	11.2	4.7	1	23	925	947	925	947	0.98
5	5	0.0032	0.63	12.0	0.1	1	21	953	973	953	974	0.94

Sequence Information

Coding Sequence: ATGAACAGCGTTGATACCCTTCTTCAAGCTGCAAAGTACCTGGAGATCCAGGAGGCAATGCAGAAGAAGTTGGAGAAGGAGCGACTCAAGAATGCGGCCATCGTCGAAAGCGAGTTGAACATGATGAAACCCATGGTCGCGTCTACGTCGCATACCATGGGGCAACATCAAGCCGCCCTCCTGCTGACATCGCGCCTTCCTGCGCAGCAGTCCGTCATCCATCAGCGTGTACCGGCTCCAGAGTCCACTATAGTTCATGAGAAGAAACTACTGATTTCTgacggctcgaaggaccatgaATTGAAATTCAAACGCGTGGAATTAGTGGGAGGCATAATCCATACTCTATGTTCCGAAGAAGAGGCAGTAGTTCTTTTTCTTCTTACTGGACCTTGCTTAAGTCGCATAACTGATCCCAATACGCAAGTCAGTCAGGAATATGTTAGAAGACTTGCCCGAATCATAAAGCCCATGCGCGACGCAATGGACGGCAGTGAAATTCATTGTCCAGAAGATTTGGACATTGACAATATTTTCGAGGAGGATTTCGAAAAATATGTAACTTTTATAGTCCCCGATGTTGATGTCGATCCAAATGACCTGGATCGAGCTGTTGCATCCCTTCCTAGAAATCTGACTTTGAGGACTACACAAGCTATAGGAGATGTCTATCACAACAGAGAAGAGTACTATTATATCGATTGTTCCGATGTTTTGTCGTCGAATTGGATGAGGTATGTCAGTCCGGCCGTATCGAGAGAATCACAGAATTTAATAGCATGCCAGTATAAGATGCACATATATTTCTACGCCATCAAACCAATCTTTCCAAATCAAGAGCTTTGTGTTTGGTATTGCAAAGAATACGCTGAGAGGCTCAATTATCCAGCAACTGGAGACCAGATGGTTATCAGACTACGTAAACAAGCGTGTCACCAAAATGAAGTTCCGATTGGTTTCAAGCATCCCTCCCTGTTGATCCCATCAGATCAGCATTCGTCTCAGTCATTGAGAGTTCATCCGCATGATTCTGAAATCGTTATGCAACAACACGAAGAAGATTCATATTCGGGTCATTCATCTCAACAACAAGAAGAACGTCTGCTCAATGTTTCAGATAATATAGTTCCGACAGATGGCCAATTAGTTGTTGATAATATGGATCATCAATTTGCAGAACCACTCACCGTTGAACAGCACCGAACTAGAGTGCTAACTTCAAGATCGTATGCATTAGAAACTGTGCCACTGAGCCAAGATTCGACAGAAACTCAGAATGTCAATGAATCATTTGTGGAAGATTTGTCAATTGGGCAAAAAATTATAGGAGATTCATCCGTGAACAATGATCAGTCTCAAGTGATTAACCGAAAAGATTCTGATATTAAAATTGCAGAAACTGCAACCAAGAACATAAACACTTACGAACCTCACTGTTCTTCGCAGGAATTACTTGAAGGGAGCGTGGGATCTGATGAAGGATATCACAGTCATGCCTATCATGATGGACCCCTGGAAGACTCAAGTGATTGTGAAAGTGAGAATAATTATGTTCTTGACTTTAGTACAAAAACCTGTTCTGCAAAATCCTCTGTAATACTACCTGTATCGCTAGAACCAAAAAACGATTTtagaaaggtgaaaataaaaatttcgagGGCATACAACTATAAGCAGAATAAGAGTTGTATGGTTGAAGAACCAATTAATCACCTCAAAGATGGTCATACGATTGTACCTGATGTCAATGAGACAAATTCAACAACAAGAATAGTGAGTCCTCATAATACTGTAATTGTGTATGACTCTCCTCCATCAGAAGTTCCTATATCAAAGTACTATAATTCTGAAGAAACGAAACAGAGATTTTCCCCACCTCGATATTCTCCATCGAGTTCAAGCATATTAGAGAATATTTTGTCAAGAAATAGAAAAGATTCGAATAATAACGAAAGCATGgagttgaaaacaaaattaacacCTCTACCAACATCTCCAACCGAAATGGCTTATTCATACAAGAAGAGCCATAGATACAGTGCAGTGAGTCCCGATTCGAGTACAAGTATCACGAATAATATCGTCGAGAAAACGAGTATTAGACCAGCAAGTCCGTTACTTATGAAAGTAACGTCTAGCTCTTCTCCAGAGCATGATCTTATTAGGTATCAGACAAACAACATCCCGTCGCCGCCAGGCTTTTATACACTCTATGACTCGCCACCTCTAGTGCACAGTACATCACTAGATACTAATTCCTATTCTCCTACTTCATCAACAAACGGATTCATTACAAACCAACATCCAAACACAGCTGGCATGGCGATATCACCCCAGCACATCATCAATGGTAACCTTTCTCATCATATGCTGACCCCATTAACTCCACTGCAAGCTTTTAGCGACAGTTCATCTCCATTGTCGAAAACATCAGATGATTCCCTGAGCCCGAACTCGGCTCAATCTAGGGGATATAAGAGTCTGGGCTatccattgagaaagaaagaCGGAAAAATGCACTATGAATGCAACGTTTGCAGTAAAACATTCGGACAGTTGTCAAACTTGAAAGTTCACTTAAGAACACATAGTGGAGAGAGGCCCTTCAAATGCAATGTTTGCACTAAGTCATTTACGCAACTTGCTCATCTGCAAAAACACCACTTGGTACATACAGGCGAGAGGCCCCACGAGtgcaatatttgtaaaaagagGTTTTCGTCTACATCCAACCTCAAAACACACATGCGACTGCATAGCGGTACTAAGCCCTATCATTGTGAGAACTGCCCTGCAAAGTTTACCCAGTTTGTACACTTGAAACTTCATAAGAGGTTGCATACAAATGAAAGGCCTTATATCTGCGTAACGTGCAACAAGAACTACATAAGCGCTTCTGGACTGCGAACCCACTGGAAATCTACGAACTGCATGCCACAACATAAAGAACACGAAATAGAAGTTGATGGATTCCATAAAAATCCTTACGATACTTCGGAAAAAGACACAGttGAAGTTGTCAATGATGAGCTGGTAGAGTGTACGAGAGAAGCATTTGAAATCTCCAGGAACCAGAATTCACCAGCAATTGCGAAACAAATTCTCAATCCTTGCCATTCTAGGGCCAAACCTTTCAGTCCGGAACCTCAAGAATCCACAGAAATGAAGGGAGAGGAGAATAAACAAGTCGAGCCGGTCGAATACTATAAACCTCAACACGACTACAATACGGAATTCAATCAGAGCAGGAAAGATGGTCAATCtgaaatggaaatgcaagaacCTAAAATGCATTTTATGGAAAACGTTGACTTCTTGAGAGATCGAGATAATGAAAGGAGAGCCCTAGAAGTGCACAAATCTTCACAAATCCATTTTCTAGAATCAATGAACACAAAACGAGACTACAGAAGCGAAATAAAGGCCATGGAGTTCCATAAATCTCAACACATTCCGATGGGACATTCAAGTAGAAACACTGGTTTTTCCAGAGCAATCTCTATGCAACAGAgccatcatcatcatcatcgttCAGGAGGAAAAGAAACAAGGCCCACCGTGATATCTAGCTCTCCCTTACACATCATTGAATGTACCTAG
Protein Sequence: MNSVDTLLQAAKYLEIQEAMQKKLEKERLKNAAIVESELNMMKPMVASTSHTMGQHQAALLLTSRLPAQQSVIHQRVPAPESTIVHEKKLLISDGSKDHELKFKRVELVGGIIHTLCSEEEAVVLFLLTGPCLSRITDPNTQVSQEYVRRLARIIKPMRDAMDGSEIHCPEDLDIDNIFEEDFEKYVTFIVPDVDVDPNDLDRAVASLPRNLTLRTTQAIGDVYHNREEYYYIDCSDVLSSNWMRYVSPAVSRESQNLIACQYKMHIYFYAIKPIFPNQELCVWYCKEYAERLNYPATGDQMVIRLRKQACHQNEVPIGFKHPSLLIPSDQHSSQSLRVHPHDSEIVMQQHEEDSYSGHSSQQQEERLLNVSDNIVPTDGQLVVDNMDHQFAEPLTVEQHRTRVLTSRSYALETVPLSQDSTETQNVNESFVEDLSIGQKIIGDSSVNNDQSQVINRKDSDIKIAETATKNINTYEPHCSSQELLEGSVGSDEGYHSHAYHDGPLEDSSDCESENNYVLDFSTKTCSAKSSVILPVSLEPKNDFRKVKIKISRAYNYKQNKSCMVEEPINHLKDGHTIVPDVNETNSTTRIVSPHNTVIVYDSPPSEVPISKYYNSEETKQRFSPPRYSPSSSSILENILSRNRKDSNNNESMELKTKLTPLPTSPTEMAYSYKKSHRYSAVSPDSSTSITNNIVEKTSIRPASPLLMKVTSSSSPEHDLIRYQTNNIPSPPGFYTLYDSPPLVHSTSLDTNSYSPTSSTNGFITNQHPNTAGMAISPQHIINGNLSHHMLTPLTPLQAFSDSSSPLSKTSDDSLSPNSAQSRGYKSLGYPLRKKDGKMHYECNVCSKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGERPHECNICKKRFSSTSNLKTHMRLHSGTKPYHCENCPAKFTQFVHLKLHKRLHTNERPYICVTCNKNYISASGLRTHWKSTNCMPQHKEHEIEVDGFHKNPYDTSEKDTVEVVNDELVECTREAFEISRNQNSPAIAKQILNPCHSRAKPFSPEPQESTEMKGEENKQVEPVEYYKPQHDYNTEFNQSRKDGQSEMEMQEPKMHFMENVDFLRDRDNERRALEVHKSSQIHFLESMNTKRDYRSEIKAMEFHKSQHIPMGHSSRNTGFSRAISMQQSHHHHHRSGGKETRPTVISSSPLHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -