Basic Information

Insect: Micraspis discolor
Gene Symbol: ush
Assembly: GCA_030674115.1
Location: JARTUT010000871.1:387752-391025[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0014 0.28 13.1 0.0 1 20 87 106 87 108 0.94

2 9 0.0001 0.02 16.7 3.3 1 23 152 174 152 174 0.99

3 9 0.0023 0.46 12.4 1.0 3 20 196 213 195 215 0.93

4 9 0.13 26 6.9 4.8 2 21 500 519 499 520 0.93

5 9 0.0035 0.71 11.8 0.0 3 20 559 576 557 578 0.91

6 9 0.37 75 5.5 0.2 2 23 610 631 609 631 0.95

7 9 0.014 2.8 9.9 0.7 1 23 637 659 637 659 0.99

8 9 0.0001 0.021 16.6 3.7 1 23 717 740 717 740 0.97

9 9 0.014 2.8 10.0 0.9 2 21 822 841 821 842 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0014	0.28	13.1	0.0	1	20	87	106	87	108	0.94
2	9	0.0001	0.02	16.7	3.3	1	23	152	174	152	174	0.99
3	9	0.0023	0.46	12.4	1.0	3	20	196	213	195	215	0.93
4	9	0.13	26	6.9	4.8	2	21	500	519	499	520	0.93
5	9	0.0035	0.71	11.8	0.0	3	20	559	576	557	578	0.91
6	9	0.37	75	5.5	0.2	2	23	610	631	609	631	0.95
7	9	0.014	2.8	9.9	0.7	1	23	637	659	637	659	0.99
8	9	0.0001	0.021	16.6	3.7	1	23	717	740	717	740	0.97
9	9	0.014	2.8	10.0	0.9	2	21	822	841	821	842	0.93

Sequence Information

Coding Sequence: ATGTATCCATTGTGCAACACAACGCTGCTTGTTAATTTGGCTACAGATCCAGCTCAGCATCCCCAGTTGTTATCGCTGGCGTCTTCTAAACCTGAGTTAGAAATTACGCCATCTCCTTCTGAGTATCTCAACAAACTCCCTCCTGTAGTCCAGTCAGCCTTTGCTCGAGGTTTCTTTCTACCAACACCTATTCAACCACCTGAACCTCCTGTAAGGCCGGATTCTGCTGATGCTGCAAGACCTCCAGCCGTTCAAGTGTTTATTTGTCCTCCGTGTGGTATAAGGTTCTCAAATTTGAGCACACTTGAGGCTCATCAAACATTCTACTGTTCTCACAGACAAAATAAAACAGATGATGAGGCAAAAAATAATAGTGGAACAGAGCCTAGTGGTAGTCAGTCAGATCATGATGGTGTGGAACCTTCTAATAAGAATATAAGAACAGGCAAACAGTACACATGTACTCATTGTTCATATAGCGCTGATAAGAAAGTGAGTCTGAATCGTCATATGAGAATGCATACAGTATCTCCTAGTCCGACTAATGTTAATGTAAATAGCCAAGATGCTGACAATGATCGGTACTGTGCTGAATGTGACATCAAATTCAGCAATCAGAAAAACTATCGAGCGCACAAAACTCATTATTGTAACTCTAGGCATATAAATAAACCGGCTACTGTTTCATCGAAACCAGCCTCCAACACATCTAGTTCTTCGCCAGCTTCTCCAGTAGATGCAACCGGTAGGAATCCTTCTTCACCTAACGGATTTCCACCTCAACAGCCCTTCTTGGCCTTACCAACGAATCCCATAATAATCGTGCCATATTCATTGTTCAAAAGTGCTAGTCTTCTGCCTGGTTTCATACCACAATCTGTTGGAATACCAAATGCTGATACACCTTGTTTTCTTCTACCAAATGGTCAACTTCAACCGATGACTCCTTCTGTAGCTGCTAATCCTGCGGAAGTTTTAAAAACCATAAATAAAGTCAAGGAAGCTGTGATAACAAAGGAGAATGCATCAGCGCCTTTAGATCTGAGTGTTAAGAAATCTACAGACAATAAAAGCTCAACTAGTAGTGATATTGTAAACGataatgaaaaagaaaatatgAAACATTTTCCACCTTCCCCTGAAAAGATTGAATGTGTTCCTTCGATACCAAATTCTCCACCGTCTACTCCAAGATCACATTCTGGAACGTCGCCAGCACTCAGTGTGTCTCCAAAGAGAAAACATGACAATGAAACTTCCAGGAGTAGTAGTCCTAGAATGCCTAGATCTAATCTTAAATCTAATATACCAGTCGAAAAACCACATCCTAGTCTTGAAGCAAACATACCTTTCGATTTAACTGCGTCCATCCATCCCTTCTTATTACATCCTGGATCATTAGCACTTTTTTCACCGGAGGTCCAGATGAGGTTAGCCTCtgaaatgccaccagttccaccAGTAGCTCCTCAAGTTTTAGTTAAGCAAGGCGTTTCTAAATGCAAAGAATGCAACATTGTTTTCTGCAAGCACGAGAACTATTTGATACACAAAAAGCATTACTGTTCTGCAAGAACTCTGGAAGATGAAGCATCTAAAAACTCCGGCAGTCCTCCAGTGAGCCCAAGAAGTAACGATACATCTAGTCCTGCCACGCAATATCAACAACTGATCTGCGTTGCTTGTGGCATAAAATTCACCTCTTTGGATAACCTGAATGCCCACCAGGCTTATTACTGCTTGAAGAGGGCTGATGTTGATGTAAGGAGATGCACCAAATGCAGAGGAATCATGGAACCAGGCCACCATTGTCCAGTTGCTGGGTGGAAATGCCCTTGTTGCGATGTAATTAGTCCTACTTCTAATGCAGCTCAAAGGCACATGGAGACTCATACTGGAGTCAAGGCATATCGCTGTGCAATCTGTAGATACAAAGGAAATACCTTAAGGGGAATGAGGACCCACATAAGGATGCATTTCGAGAAGAGATCTCCTGATTTACAGGAGGAAAAATACATCACTTACATACTGGAAGATGATAGCACCCAGCCAGTAGAGATGAACGTCAATCCTGTATCAGTGATCCAGAATGCAGCAGATGAAAGAGAAATATCGCCAGCTTCAGAATCTAGACCAGACAATGCTCCCCATCAGTGCAACCATTGCTCGTACAGTTCACCTTACAAAGCAAATCTCTTACGCCATATGAAGATGGTACACAATAATGCACCACTTCAACCATTGGAGACAGTTCCAGTGAATGGTTCTTCCAAATCGATGCCAAATCTTGATGATGAAGAGGAAATAAAAGTTAAGAAAGAAGCTATCGAACCAGAAGTCATTATAGCACCTATTGAAGAGCCAATCAAAAGGGAAATATTAGAATCTGGAACTGAAGAACATAAAGTGAAGACCGAAAGAGATGAAGAAATGTCTCAAGAGGGTTCAAAGGCAGGTCCTAAATACTGCAAATCGTGTGACATTTCCTTCACTTACTATTCGacttttattgctcacaaaaagTTTTATTGTTCGAGCCATGCAGGCGAAATGACTGCAACGTCAACAAATAACAACAATAATACGCCTAGTAGAACTACAGAAACTTCTGTTCAGTGA
Protein Sequence: MYPLCNTTLLVNLATDPAQHPQLLSLASSKPELEITPSPSEYLNKLPPVVQSAFARGFFLPTPIQPPEPPVRPDSADAARPPAVQVFICPPCGIRFSNLSTLEAHQTFYCSHRQNKTDDEAKNNSGTEPSGSQSDHDGVEPSNKNIRTGKQYTCTHCSYSADKKVSLNRHMRMHTVSPSPTNVNVNSQDADNDRYCAECDIKFSNQKNYRAHKTHYCNSRHINKPATVSSKPASNTSSSSPASPVDATGRNPSSPNGFPPQQPFLALPTNPIIIVPYSLFKSASLLPGFIPQSVGIPNADTPCFLLPNGQLQPMTPSVAANPAEVLKTINKVKEAVITKENASAPLDLSVKKSTDNKSSTSSDIVNDNEKENMKHFPPSPEKIECVPSIPNSPPSTPRSHSGTSPALSVSPKRKHDNETSRSSSPRMPRSNLKSNIPVEKPHPSLEANIPFDLTASIHPFLLHPGSLALFSPEVQMRLASEMPPVPPVAPQVLVKQGVSKCKECNIVFCKHENYLIHKKHYCSARTLEDEASKNSGSPPVSPRSNDTSSPATQYQQLICVACGIKFTSLDNLNAHQAYYCLKRADVDVRRCTKCRGIMEPGHHCPVAGWKCPCCDVISPTSNAAQRHMETHTGVKAYRCAICRYKGNTLRGMRTHIRMHFEKRSPDLQEEKYITYILEDDSTQPVEMNVNPVSVIQNAADEREISPASESRPDNAPHQCNHCSYSSPYKANLLRHMKMVHNNAPLQPLETVPVNGSSKSMPNLDDEEEIKVKKEAIEPEVIIAPIEEPIKREILESGTEEHKVKTERDEEMSQEGSKAGPKYCKSCDISFTYYSTFIAHKKFYCSSHAGEMTATSTNNNNNTPSRTTETSVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00020830; iTF_00130821; iTF_01024384; iTF_00349551; iTF_00965469;
90% Identity: -
80% Identity: -