Mdis029687.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- Prdm4
- Assembly
- GCA_030674115.1
- Location
- JARTUT010001741.1:3254059-3258310[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.55 1.1e+02 4.9 2.4 2 22 241 261 240 261 0.95 2 10 9.4e-05 0.019 16.8 0.5 3 23 352 372 351 372 0.98 3 10 0.0085 1.7 10.6 8.7 1 19 376 394 376 397 0.93 4 10 0.00034 0.068 15.0 1.0 2 23 403 425 402 425 0.91 5 10 0.00059 0.12 14.3 3.0 1 21 429 449 429 450 0.94 6 10 1.5e-05 0.0029 19.3 1.3 1 23 456 478 456 478 0.97 7 10 0.001 0.21 13.5 0.3 1 23 484 506 484 506 0.97 8 10 0.0055 1.1 11.2 3.3 1 23 511 534 511 534 0.92 9 10 0.0082 1.7 10.7 0.7 2 16 540 554 540 556 0.88 10 10 6e-06 0.0012 20.5 1.9 2 23 572 594 571 594 0.96
Sequence Information
- Coding Sequence
- ATGATCGACGTCGTTGGACTGAGGATGAATGAAGAATCAGAAATAACTGAAATATGTGCTATTTGTGGCTCTGCTCACTCTACGACACTTTGTGACCATGCAGTTATCACCAATATTgtTTTGAATGCTTCAACTTCACCTAGGGCGCAATTGTCTCTACCTGAAGATTTTCTGCTCCACATATTGGCCGATGGGAGATCTAGGATTGTTACTACTAAATTTATACCGAAAGGTACCCGTTTTGGCCCCATAGAGGCTATGAAAACAATCACTTGGAATCCAAGCTCACAATTTCAATTGAAGATTTTTCCTTTTGGTGAAGAAAATTTCTTAGAATATTTTTTAGATACTACTAATGAGGAAATTTCCAATTGGATGATATATATTGAAAaggctgaaaattatgaagaacAAAATTTAATTTGTTACCAAGAGGAAGagtatatttattatttgtcTATAAAGGACATACAAGAAAATCAATCACTGAAAGTATGGTATGCTCCTCATTATGCTCGAAAAATGAACAAAGATTTACTGGAggatatttcattaaaaattactACACCTCTTATAGACCTGGATCAACTTGTCAAATCGAAGAAAAATGTTCCTCAGGTAGACTGCTGGTCCTGTAAGTTTTGCTGTTCAACATTTATGAAGATTACAGAATTTGCTAACCATTTGATTAAAGAGCATTACAAACAACAGAATCGAAAAAAATGCAGACAATGTGACTCAAATTTCAAATCTCCTTTGgaaGTTTGTCAACACCTACGAAAAAACCAATACAGCAAGAAAAAATTGACCAAAAATTCAACATTTGCTGAGCAAAATTATTGCAAAGAGTCATCTATTGGAGATCCCTTACTCAATGGTATAATTTTACCAGAGAATGTAGATACTGATTTTATTATACCAACTATGGGCGAAGATACTCAGATAATGGGCGTAGAAAACATTAATATAGAGAACCTTTTGATGCCAGAAAATTTCAGAGAAAtggattatttcaattttgaaattgaagaaTCAACTGAAGAAGAAATTCTTTGTGACATTTGTGCAAAAAGTTTTTCAAAGTTGAAGAATCTTATTCAACATTTGAAAGGACATAGAGGAGATCATTACTGTTCAAGTTGCAATAAGGTTTTCTCTAGGAAGGAAAATTTATGCCATCATTCTTGCAATGCGAATCTCATCATTTCCTGTTCATCTTGCGATCGCACTTTCtcaggaaaaaaaaactataaacgTCATGTAGACCAGGTACACAATCATAAGTACGAATGTGACGAATgccataaaaattattcgaacaaATACGAATTAGACCAACATGTATGCAAGAGGCCGCTGAATCTCTTTGTTTGTGGAACTTGTCAGAAAATATTCACATCACAACGGTATCTGAAGAAACACGTTGCAAGACATAAAGCCATTATAACCTTCATTTGCGAAGTTTGTTCCAAGGGCTATACCACGAAATTTGCTTATGAATTACACGCCTTGACCCACAAAAATCCCCGACATAAATGTGATATATGTCAAAAGGAATTTCATCGAAAGGATATTCTCAAGAAACATGTGTTGGACTTACATACTGAACAGGTGGAGGTATGTGATATTTGCAACAAAACATTCAAATCCAAAAGGCATATCAAAACTTGCTCAAAGAAGCAAGATATTCAGAATCCTGCAATATCGACCCTTCAGTGCGAATATTGTAAGAAAAGATTCAAACTTCAAAGTTCCCTAGTCAGGCATATTTTGAGAAAACATGCGGTACAAAGAGAGACTCTTGAGGAAGCACCACCAGAGAAAGGAGTATTACAGTTTTTGAACAATGACCTGGATTTAATAACAGATTCTCAGGATAATATCGATTTGTTGAATGACGAAGAAATTGATGAAGTGGGAAGAAAACAAATTCAAGTTATTGATAACATACTACTGAAAAAGAGCGAAGAAATACTTGGCATTAATAATTACATTTCGAACCCAACTGACAATATTACTGTGGAAAATAAAGGAATGGAAGTAgacgaaaatatagaaaatagagAAGTGTTTTTGTCTATGCCGGATTTGATGGATATCGAGAACGATATAATATTAGGTAAGTTTATATTGATTGGCTTGAATAAGAAGCCAGCTAATGTTGAATAG
- Protein Sequence
- MIDVVGLRMNEESEITEICAICGSAHSTTLCDHAVITNIVLNASTSPRAQLSLPEDFLLHILADGRSRIVTTKFIPKGTRFGPIEAMKTITWNPSSQFQLKIFPFGEENFLEYFLDTTNEEISNWMIYIEKAENYEEQNLICYQEEEYIYYLSIKDIQENQSLKVWYAPHYARKMNKDLLEDISLKITTPLIDLDQLVKSKKNVPQVDCWSCKFCCSTFMKITEFANHLIKEHYKQQNRKKCRQCDSNFKSPLEVCQHLRKNQYSKKKLTKNSTFAEQNYCKESSIGDPLLNGIILPENVDTDFIIPTMGEDTQIMGVENINIENLLMPENFREMDYFNFEIEESTEEEILCDICAKSFSKLKNLIQHLKGHRGDHYCSSCNKVFSRKENLCHHSCNANLIISCSSCDRTFSGKKNYKRHVDQVHNHKYECDECHKNYSNKYELDQHVCKRPLNLFVCGTCQKIFTSQRYLKKHVARHKAIITFICEVCSKGYTTKFAYELHALTHKNPRHKCDICQKEFHRKDILKKHVLDLHTEQVEVCDICNKTFKSKRHIKTCSKKQDIQNPAISTLQCEYCKKRFKLQSSLVRHILRKHAVQRETLEEAPPEKGVLQFLNNDLDLITDSQDNIDLLNDEEIDEVGRKQIQVIDNILLKKSEEILGINNYISNPTDNITVENKGMEVDENIENREVFLSMPDLMDIENDIILGKFILIGLNKKPANVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -