Basic Information

Insect: Micraspis discolor
Gene Symbol: -
Assembly: GCA_030674115.1
Location: JARTUT010001315.1:600462-611011[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.1 4.3e+02 3.1 1.0 2 18 56 72 55 72 0.89

2 18 4.7 9.4e+02 2.0 2.3 1 19 258 276 258 279 0.84

3 18 0.52 1e+02 5.0 4.4 1 23 308 331 308 331 0.94

4 18 2 4e+02 3.2 0.4 6 20 342 356 340 357 0.95

5 18 0.06 12 7.9 0.1 1 23 364 387 364 387 0.96

6 18 6.4e-05 0.013 17.3 0.8 2 23 455 476 454 476 0.98

7 18 0.0026 0.52 12.2 0.2 1 23 495 516 495 516 0.98

8 18 2.4e-05 0.0048 18.7 0.3 2 23 520 541 519 541 0.97

9 18 0.14 28 6.8 0.4 2 23 566 587 565 587 0.96

10 18 0.084 17 7.5 0.5 1 23 597 620 597 620 0.92

11 18 0.028 5.6 9.0 0.1 2 23 633 654 633 654 0.97

12 18 0.12 24 7.0 1.0 2 23 731 753 730 753 0.93

13 18 0.00022 0.045 15.6 2.3 1 23 790 812 790 812 0.95

14 18 0.3 59 5.8 0.0 1 23 837 860 837 860 0.90

15 18 0.0028 0.56 12.2 0.7 2 23 870 891 870 891 0.97

16 18 0.00057 0.12 14.3 1.1 1 23 904 927 904 927 0.96

17 18 1.6e-05 0.0033 19.2 0.2 1 23 934 956 934 956 0.98

18 18 0.0024 0.48 12.4 0.7 3 23 972 993 970 993 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.1	4.3e+02	3.1	1.0	2	18	56	72	55	72	0.89
2	18	4.7	9.4e+02	2.0	2.3	1	19	258	276	258	279	0.84
3	18	0.52	1e+02	5.0	4.4	1	23	308	331	308	331	0.94
4	18	2	4e+02	3.2	0.4	6	20	342	356	340	357	0.95
5	18	0.06	12	7.9	0.1	1	23	364	387	364	387	0.96
6	18	6.4e-05	0.013	17.3	0.8	2	23	455	476	454	476	0.98
7	18	0.0026	0.52	12.2	0.2	1	23	495	516	495	516	0.98
8	18	2.4e-05	0.0048	18.7	0.3	2	23	520	541	519	541	0.97
9	18	0.14	28	6.8	0.4	2	23	566	587	565	587	0.96
10	18	0.084	17	7.5	0.5	1	23	597	620	597	620	0.92
11	18	0.028	5.6	9.0	0.1	2	23	633	654	633	654	0.97
12	18	0.12	24	7.0	1.0	2	23	731	753	730	753	0.93
13	18	0.00022	0.045	15.6	2.3	1	23	790	812	790	812	0.95
14	18	0.3	59	5.8	0.0	1	23	837	860	837	860	0.90
15	18	0.0028	0.56	12.2	0.7	2	23	870	891	870	891	0.97
16	18	0.00057	0.12	14.3	1.1	1	23	904	927	904	927	0.96
17	18	1.6e-05	0.0033	19.2	0.2	1	23	934	956	934	956	0.98
18	18	0.0024	0.48	12.4	0.7	3	23	972	993	970	993	0.94

Sequence Information

Coding Sequence: ATGTCGAAATCTGAAAACGGAAGTACTTCCTCGTGTTGTAAACTTTGCCTCACTGAAAATACTGAACCAATTTCTTATGAAGATCCAGTTGCACTCGCAGTATTAAAAGAACGAATATTGACTCACCTGTCAATCGAGATCAAACAAAGTAACCAATCAGAACTTGTATGTGAAGAATGTTCTAAAAGGGTCAACAGCTGGTGTGAATTCAAGAGGTCTTGCCAGAGGAATCAAAGCTCGATCGAATTTTTGACAAATGAAAGTCCAGAAAAAGCGATTATTCAAGTTAAAGGAGAAAGCATAACGGAAGAGTGTGCTGATGAGGATGATGATATTGAAATTATAACAGAGAATATAGATATAAAAGCCGAATCTATAGACTTCGACAGTAATGACGTGGCTGCAATCGATTATACTGTCGATCAGTCTAATGCTGATGAACAAATATGTAATGTAGCACTGATTATGCAAGAAACGGAGGAACCTGAGACACAAAATGGAATTGAACTGGCATCAACTGAAAAGGAGAAATTTCAGCTATCAATTCATTCTGAGAAGAAGGAATATGAGGCAACCCCCAAATTTGTGAAAAACGATTCAACCCAGAATGAAATGGGACATTTATCTGCATTAGAAACAAGTTATTTAGAAAAGTGTAGAGCCATGGTTGAAATGTATCGTTCATTGAATTGCGCATGCCATTTAGCCAGTCATCCTACCTTGAAGGGACTACTTTCTCATCTCAGATCCGTGAAAAAATGGTTTCCTGTGTTCACATGCTACCACTGCATGATCACATTCACCGATAGATCATCAAGTGGAAAACATCTCCATAAATGTACAAATGGAAATCTGGAAGCATTGATGAAATTGGCCAATTTGAAATCAAGAAGCCTGCTGAAAACTAGGATTTATCAAAATTATAGGTGTATGGAATGCAGATTCATTTACTCTTTCCATGAAGATTTCTGCAAGCATATTGACGAAGAACACAGTGAGGAAAAAACCCGCTATATTTGTTCCTGTCAAAAGAATTTTGATTCGCTTCAGGATTACAAAGATCATATGTACTTTTCATGTATGGTAGAATATTTTTGTGATATTTGTAGCGTTGCTGTGCGAACATTGAATGAGTTTGTGAACCATGCCCGTATTCAACATGATAGCTCAGAAGGATTTTCGCTTCTGCAAGAAGACAACTATAAAAAAAGATCATCACCTAAAGTTGCAACAAAACAAAATAAGGAGGTTCTGGGCAAAAGAAATAGTTGTACCTTCATAAAAACGGAAGTAATAGACTTGACTGAAGAAGTTGACGAAATTACACCTAAGCGTCAGAAGAGTTCTAGGAATAGTCCTACAAAATGTCCGAAATGCATTAAAGTGTACTCCAGTCAAGCAAACATGCTGAGACATTTACGAACGCATCAAGACGAGGTTAAGCAAGAAAATCGGAAGACTGGAGCTACAGATAATTCCTATTATAGATGCCCTGACTGTCAAATCATGTTCAATGCAGGGGAATGGGAAACGCATAAAAAATCTCATGAAAAGGTTAAATGCTCAGACTGTGATAAAGTATTTGTATTCCAAACCGAACTTGAACTTCATAAAAATGTTCACTTGAACCTCAAGGTTTATAGCTTGAATAGAACTGATTCAAGCTCCATGCTTAGCCAAAGTTCTAGCCTTCTTGTTTGTGATATATGTAATATTCTGTGTGAAAATTTCGAAGATTTGGAAAGTCATAAGCTATCTCATGAGGATGATGATGTAGATATTTCCAAATATTTATGCGCCACATGTAACTTGAATTTTGTCTCATATTCTGAATATAATGAGCACAATCTCAAATTACATGCCGACAAACAACTATCCCTTAGTATTTACCCTAGGAAATGCGATGAATGTGAAAAAGTTGTAACAAGTGGTTCTGCATTTGCAAGTCACAAGGCGATGCATAGGAGATTAAGGGACGATAAGGTTAAGATATTGAAAGGAGATCCTCCATTagaaatacaaaattttaatattcaagatctATCTACCGCTAGTAAGAACTCAAAGTCATCCAAGAAGTTCTTTAATAGAAGCAGAAATAATAAAGCCGATGGCGGTGAAAAGTCGAGTGCACATATCAACCAAATCTCTGAACGAGAAGAATTGAGTGGCGAGTCTAACAACATACTAATGTGTGAGATTTGCATACAAACTTTCTTTAATGAATCTTCTTTTAAACAACATAAAGCCAAGTATCATGTACAGAAATCTGTTAAGAATGTGAATAAAATGGCGAACGACTTGAAATTCAAAATGATTGAAGATACACCAATATCGTCTAAAGTCAAAAAACCCGAGAACGTTCACTTCTCTTGTAAAACATGCAACAAGAAATTCATCTCGCAATCAGCAATGTGTGCACACCAAGGATGGCATAGAAAAATGATGAATTATGGACATTCAACATCAAAAGAACCCAATTGGCAACCAAAAGTTAAAAGAGAAGAATTTGAATGTGAAATTTGTGGTCTCGATCTACCAAACGATATAGCATTACAGATCCATACAATTGAAAAACATGGaaattttcctaatttatctATACCTAAATGTAATTCTTGCAATCAAGAGTTTGGTTCTCAGACCGAGTTTGAAAATCATATACAACTACATGAAATTGTAGAGAAACAAAGTATGCCAGAAAAAtcttatgaatgtaaaaattgtTTTGCTCCATATAGTAATAAAGAAGCATTACAAGCTCATTTGAAACTATGTCATGAGAAATCTACTCAAGAATTTGAATGTTCACAATGCGGGAGAAATTTCGGTAAGCTGGCGGCACTGAATACTCATATGAaagttcatgaaaaatataaggTTGTAGCTGGAAATTTAAAATTCTTGGTTCATTGTTCAATATGCAACATGGGTTTCAATACAACTAAAGACTTGAGAATTCACACGATATCCGCTCATCCCTTTTGA
Protein Sequence: MSKSENGSTSSCCKLCLTENTEPISYEDPVALAVLKERILTHLSIEIKQSNQSELVCEECSKRVNSWCEFKRSCQRNQSSIEFLTNESPEKAIIQVKGESITEECADEDDDIEIITENIDIKAESIDFDSNDVAAIDYTVDQSNADEQICNVALIMQETEEPETQNGIELASTEKEKFQLSIHSEKKEYEATPKFVKNDSTQNEMGHLSALETSYLEKCRAMVEMYRSLNCACHLASHPTLKGLLSHLRSVKKWFPVFTCYHCMITFTDRSSSGKHLHKCTNGNLEALMKLANLKSRSLLKTRIYQNYRCMECRFIYSFHEDFCKHIDEEHSEEKTRYICSCQKNFDSLQDYKDHMYFSCMVEYFCDICSVAVRTLNEFVNHARIQHDSSEGFSLLQEDNYKKRSSPKVATKQNKEVLGKRNSCTFIKTEVIDLTEEVDEITPKRQKSSRNSPTKCPKCIKVYSSQANMLRHLRTHQDEVKQENRKTGATDNSYYRCPDCQIMFNAGEWETHKKSHEKVKCSDCDKVFVFQTELELHKNVHLNLKVYSLNRTDSSSMLSQSSSLLVCDICNILCENFEDLESHKLSHEDDDVDISKYLCATCNLNFVSYSEYNEHNLKLHADKQLSLSIYPRKCDECEKVVTSGSAFASHKAMHRRLRDDKVKILKGDPPLEIQNFNIQDLSTASKNSKSSKKFFNRSRNNKADGGEKSSAHINQISEREELSGESNNILMCEICIQTFFNESSFKQHKAKYHVQKSVKNVNKMANDLKFKMIEDTPISSKVKKPENVHFSCKTCNKKFISQSAMCAHQGWHRKMMNYGHSTSKEPNWQPKVKREEFECEICGLDLPNDIALQIHTIEKHGNFPNLSIPKCNSCNQEFGSQTEFENHIQLHEIVEKQSMPEKSYECKNCFAPYSNKEALQAHLKLCHEKSTQEFECSQCGRNFGKLAALNTHMKVHEKYKVVAGNLKFLVHCSICNMGFNTTKDLRIHTISAHPF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -