Mdis010555.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010000444.1:367531-369067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00082 0.16 13.8 1.7 1 23 123 146 123 146 0.95 2 11 2 4.1e+02 3.1 4.0 1 21 152 172 152 173 0.92 3 11 8e-06 0.0016 20.2 2.0 2 23 205 227 204 227 0.96 4 11 6.3e-06 0.0013 20.5 0.8 1 23 233 255 233 255 0.98 5 11 1.5e-05 0.0029 19.3 2.6 1 23 261 283 261 283 0.96 6 11 1.6e-06 0.00033 22.3 1.1 1 20 289 308 289 309 0.96 7 11 4e-05 0.008 18.0 1.1 1 23 320 342 320 342 0.99 8 11 8.9e-05 0.018 16.9 5.6 1 23 348 370 348 370 0.98 9 11 0.006 1.2 11.1 3.3 1 23 376 399 376 399 0.96 10 11 0.00039 0.078 14.8 6.3 1 23 411 433 411 433 0.98 11 11 2.5e-06 0.00051 21.7 2.5 1 23 439 462 439 462 0.98
Sequence Information
- Coding Sequence
- atgaatatttggAATACATGCATGATATGCTTGAATTCAAGCGAAAATCTCACAGATATTTCTATTCGAAGTTCGGCTAATACGTCTGTTAaagcaaaattagaaaaatgcaTACCAGAAGTTGAGTGGAGGAATAGTTACAAAATTTGTTCAAATTGTTCTGAACAAGTAGAAAATATATACAATTTCCGTGAAATTTGTACCAATTTGGATGAGGCTAGGTTCTCATTATGGAAAGAGATTACAAAATCGAAATCAATAGATGTAACTGACCATAATTTTACCTCTAATGGCGAAGCACTTCCTTTAAATGATATTAAgatagaaattattgaatacGAAGAGATTCAACATGAGTCCAATAACTATTTTTGTTTCCACTGTGATGAAATGTTTCAGGTCAAAACTAGTCTAGCCAAACATATAGAAAATTTACACCCAAGATTTAGAAAATATATCTGTAAATACTGTAGAAATCACTATGTGAACAGGAGTTCGTGTATGAAACATGAAAGGCTGTGTTTCGTGAGGAAAGCAAATGTTCAGTTTGAGCCAGTTGAACAATCCTGTTCAGAAATCGGTGACAAGTTTCAAGAAAGTGATGAACAGAATAAATGTGATGTTTGTGAAACAACATTCAAGACAAAGTATCTTCTGAACAGGCATAAAAGAAATGTGCATGCAAcggagaaaaatttcaaatgtgacGAGTGTTCAAGAAGCTTTGTTTCTCCTGTTTATTTGAATGCCCACAAGAAATATCATTCTGGTGACCGAAAGCACATTTGTTCATATTGTGGAAAGGGATATAAAACTGCTAGTGATTTATATCATCATGAAAAAATACATGGAAACAAAAGGGCCTATAAGTGTTCAATCTGTGATAAAGCATTTAATACCTCTTCTGATTTACACAAACACAAAATCTGTGTTCATACAGACAGaaatttatggaaatattcatgTGAATATTGTATGCGTAAGTTTCCCTTGAAGACAAACTTAACCGCACATATTAAAACACATACTGGTGAAAGAAATTTCTCTTGCCATTTGTGTGagaagaagtgtatttcaaaatCGTCTCTTACCAGACATTTAGAAAGTCATGTTGATGAGAAAAGCTTTACTTGTAAAGAATGTAATTTAGGTTATAAACATAAAAAGTCCCTAGAGTTCCATATGGCTAGAAACCATGGAATAGGTAATTTACCAGAAagagttaaaaaatatttttgtcatcTTTGCCCAAAATCATACTATTCTAATTGCAAACTTGAGAAACATGTCAGGAGTCATACAGGTGAGAAGCCTTTTAAATGTCCCCTTTGTGATAAGCATTTTGTGGATAAAACCTATATCAAGCGACATTTGAGATCTGCACACGATGAAAATACACTTGATCTACTATGA
- Protein Sequence
- MNIWNTCMICLNSSENLTDISIRSSANTSVKAKLEKCIPEVEWRNSYKICSNCSEQVENIYNFREICTNLDEARFSLWKEITKSKSIDVTDHNFTSNGEALPLNDIKIEIIEYEEIQHESNNYFCFHCDEMFQVKTSLAKHIENLHPRFRKYICKYCRNHYVNRSSCMKHERLCFVRKANVQFEPVEQSCSEIGDKFQESDEQNKCDVCETTFKTKYLLNRHKRNVHATEKNFKCDECSRSFVSPVYLNAHKKYHSGDRKHICSYCGKGYKTASDLYHHEKIHGNKRAYKCSICDKAFNTSSDLHKHKICVHTDRNLWKYSCEYCMRKFPLKTNLTAHIKTHTGERNFSCHLCEKKCISKSSLTRHLESHVDEKSFTCKECNLGYKHKKSLEFHMARNHGIGNLPERVKKYFCHLCPKSYYSNCKLEKHVRSHTGEKPFKCPLCDKHFVDKTYIKRHLRSAHDENTLDLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -