Mdis024629.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010001315.1:628722-642753[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.9 3.9e+02 3.2 1.8 1 18 156 173 156 173 0.90 2 19 2.1 4.2e+02 3.1 0.3 6 20 446 460 444 462 0.93 3 19 0.02 4.1 9.4 1.8 1 23 468 490 468 491 0.95 4 19 0.004 0.8 11.7 3.1 2 23 559 580 558 580 0.97 5 19 0.14 28 6.8 0.1 1 23 599 620 599 620 0.95 6 19 0.0036 0.72 11.8 0.3 2 23 624 645 623 645 0.95 7 19 0.28 56 5.8 0.8 3 23 673 693 672 693 0.97 8 19 0.052 10 8.1 1.0 1 23 708 731 708 731 0.93 9 19 0.0097 1.9 10.4 0.1 2 23 744 765 744 765 0.97 10 19 3.5e-05 0.007 18.1 5.9 1 23 799 821 799 821 0.97 11 19 0.019 3.7 9.6 0.2 1 23 838 861 838 861 0.93 12 19 8.1e-05 0.016 17.0 2.3 1 23 877 899 877 900 0.95 13 19 0.0018 0.37 12.7 0.4 2 23 916 938 915 938 0.94 14 19 2.7e-05 0.0054 18.5 0.7 1 23 955 977 955 977 0.94 15 19 0.17 35 6.5 0.0 1 23 1003 1026 1003 1026 0.92 16 19 0.0015 0.31 13.0 0.8 2 23 1036 1057 1036 1057 0.97 17 19 0.00015 0.029 16.2 0.4 1 23 1070 1093 1070 1093 0.97 18 19 5.6e-07 0.00011 23.8 2.3 1 23 1100 1122 1100 1122 0.99 19 19 0.00023 0.046 15.6 0.2 1 23 1137 1160 1137 1160 0.97
Sequence Information
- Coding Sequence
- ATGGATACGTTAGGAGCAGCTCATAATTCGTGTAACAAGTTTAAATCCTCTAATCCTAGTAGACCTTCAAACCCGAAATCAAACATTGCATCTTACTTCTCGAATGATCACAAGATGCAACGCTCCAAAAATAGCCCAATTTGTACACTTTGTAAACAAAATCATCCGATTCAATCTTGTTCAGATTTTTTGGAAAGATCTCCTCAGGAACGTCATGCCTTCGTCAAGCAAAAGCACTTGTGCTTTAATTGCCTGAGTGGAAAGGCTGCAAATTCGTTATGTCTACCCCGCCGTAAAATAGATGTCGAGGTAAAGGGTCTCAGCACCATGAAAACTAATGCTACTCATGGTTACTTGACTTTGTTATTTCGACCACTCAATTTGAATGAACCTGTCATATTGACAGACGCTGTAATTCTAGATAGAATTTGTGATGAGataaatcaGAACGATACATTATCCAAGCACGTATGTGAAGAATGTTCCAAAAAAGTCAACAACTGGTGCGAATTCAAAAAAAATTGCCAAAGGAACCAGACCACACTTACATCTTGGGCGAATGAAGGTGCACAAAGGATGGTGGTCCAAGTGAAAGAGGAAGTTATAGAAGATGATGATTCTCCTCTGGAGCCTGACGATATAGAGATTGTGAATGAGAACATAATTGTTAAAGCTGAACCTCCTTTTTTCGATCAATTCGATGACTCCTTGGCCAATGGTACTGCTGATCATCCTGATGAACACCAAGTTTATGATGATGGATCTGGTATCCAGATGGAAGTAGAGGAAGACGAAGAACAAACTAACGGAGAAGtgccGTCAGGTGTTACCATCACGAGAAGGTACTCCGAGCAAAGCCATTCTGAGAAGATAGAATTTGCTGCAGGACTTAAACTAATCAAAAAGGATTCTACTCCAATACAAATTGAAAATCTTTCTCCTTTAGAATACAGCTACATTGAAAAATGTAAAGCAATGGTTGAAATGTATCGCACTTTGAAATGTGCATGCCATTTGGCCACCCATCCAAATTTGAAAGGATTGCTGTCCCATCTAAGATCGATGAAGATGTGGTTTCCCGCATTTTCTTGTTTTAATTGTATGATAACCTTCACTGACAGATCTTCTAGTGGAAAGCATCTTCACAGATGTCCTAATAAGAATCTAGATACATTGGTTAAACTCTCCAATCTCAAGAAGAGGAGTTCCTTAAAAACCAGAATTTATCAAAACTACAGATGCATAAAATGTAGATTCATATATTCTTTTCATGAGGACTTCTGCAAACATGTTGATGAGGAACATTGCCAGGAGGAGGCTCCATTCTTGTGCTCTTGCCATCAGCGTTTTGAAACCCTGGAGGACTATAAAGATCATATATATGTTTCATGCATGGTGGAATACTACTGTGACATATGCAATATTGCAGTAAGAACTTTAAAAGAATTTATAAACCATGCGAATCATCATCATGACAATTCAGATGGATTTACCATTCTTCAAGATGATAATTATAAAAGAAGGTCATTCACTAAAGTGGAACCAAGAGAAAATAAAGAGATTTTGGGTAAAAGAAGAAGTTCCACGTTTGGTAGATCACTAGCAGTAGACGAGGTTGGAGAAGATTTTGAAATCCCGTCAAAAATTCCCAGGTACAGTAAAAATGTTCCTACAAAATGTCCTCAATGTGACAAGGTATATTCTTGTCAAGCAAATATGCTAAGGCATTTTAAAACTCACCAAAGTGAAGTAAAACAAGAAAAACCTGATTCAAGTATTCCAGAGAATTCGTATTATAGGTGCCCTGACTGTAAGATAATGTTAAATGCAGACGACTGGGAAACACATAAAGAATCCCATGAACAGATAAAATGTTCTGAATGTGATAAAGTATTTCTCTTCCAAACTGAATTGGAACAACATAGAGGAGTTCATTTGAACCTTAAAGTTTACAGAGATTCTAAAACAGATTCATATAAGAGTACCATGCTGAGCCCAAATCCGGAGATGCCAATATGTAATATTTGTAATATTCTGTGTGAAAACTTCGAAGATCTAGAAAGCCATAAGTTATCCCATGAGGATCTCGAAGATGAAGGTGTACCTATTGAACTTTCCAAATATTCATGTTTAATATGTAACAAACATTTTGCGGCATATGCTGATTACAATGAACATAATCTCAAGTTACATGCTGACAAACAAATTTCCAATAATGTTTATCCAAGACAGTGTGATGAATGTGATAAAGTGGTGTCTAGTGGATCAGCGTTTGCAAGTCATAAAGCCATGCATAGAAGACTTCGAGATGATTCATCGAGAATATCTAAACCTGAATCTCCCCAGGAGAAACCTAAGTCTAGAAAATCTGATAATCAAGAGGGAGAAGACTATCATACTTGCAAGAGATGTTTCAAAGTTTTCTCAagtagatataatttgaaaatgcATATGAAATTACATGGAATAAATGTAACAACAACAGGTAGAACCTCAAGGTCCCCTAGGAAGTTCCACTGTGATCCATGCAATTTGAACTTTGCGAACAATGAAGCTTTGAATGATCATATTAATGAAGAACATGATGATATGCCTGAATTGGAAGAATTCAATAATGGACCATATATTTTCACGTGTGATGTTTGTGTGCAGACATTCTCCAATAAATCCGCTCTTATACAGCATAAATCTAAGCATCATTCACAGGAATCGGGGCCATCTAGAGAGGACAAAAAGTTCGTTACCtattgtaaatattgtaaaaTCGGATTTGACAGAACAGAGGATTTGGATAAACATATGGTTAAAGCGCACAGTGAGATACCAGTGCCTTCCAAGGATTCTAAGGCCAATAACAAAGTATTCTCTTGTAAAATATGCAATAAAAGTTTTTCCACTCAGACAGCTATGTATGCACATCAAGGATGGCATAAGAGAACAAGTAATAGTGGTCCATTAATTACTCAATCCAAGAAATACGTTCCGCCAGCAACAAAGAAATCTCCGTTTGAATGTGATGTATGTGGTCAAGAACTGCCCAATGATATAGCCCTCAAGATCCATACCATCGAAAAACATGGAAACGTAGCTGCTTTATTGACACCAAAATGTGAATCGTGCAATCAAGAGTTTGGTACTCAAACAGAATATGAAAATCATATGAAACTTCATGAAATTGTGGAGAACCAAAAGGTACAGAAAATAACTTATAGTTGCCAATTATGTACCGCGTCGTTCAGTAAAAGTGAAACACTGCAAGCACATGTAAAAATTAGTCATCCTACACATCTTCAAGAGTTTAAATGCCCCCATTGTAACAGAAGTTTTGATAAACAGGCATCTCTGACGAATCATATCAAAGTACATGAGAAACAAAAGGTTGTAGTTGCAGCAGGCCCTAAACCCACATTTCAATGCTCGATATGCAGTATGGGCTTCAACGTACCAAAGGATTTAAGAACTCATACTATAACTGCTCATCCCTTCTGA
- Protein Sequence
- MDTLGAAHNSCNKFKSSNPSRPSNPKSNIASYFSNDHKMQRSKNSPICTLCKQNHPIQSCSDFLERSPQERHAFVKQKHLCFNCLSGKAANSLCLPRRKIDVEVKGLSTMKTNATHGYLTLLFRPLNLNEPVILTDAVILDRICDEINQNDTLSKHVCEECSKKVNNWCEFKKNCQRNQTTLTSWANEGAQRMVVQVKEEVIEDDDSPLEPDDIEIVNENIIVKAEPPFFDQFDDSLANGTADHPDEHQVYDDGSGIQMEVEEDEEQTNGEVPSGVTITRRYSEQSHSEKIEFAAGLKLIKKDSTPIQIENLSPLEYSYIEKCKAMVEMYRTLKCACHLATHPNLKGLLSHLRSMKMWFPAFSCFNCMITFTDRSSSGKHLHRCPNKNLDTLVKLSNLKKRSSLKTRIYQNYRCIKCRFIYSFHEDFCKHVDEEHCQEEAPFLCSCHQRFETLEDYKDHIYVSCMVEYYCDICNIAVRTLKEFINHANHHHDNSDGFTILQDDNYKRRSFTKVEPRENKEILGKRRSSTFGRSLAVDEVGEDFEIPSKIPRYSKNVPTKCPQCDKVYSCQANMLRHFKTHQSEVKQEKPDSSIPENSYYRCPDCKIMLNADDWETHKESHEQIKCSECDKVFLFQTELEQHRGVHLNLKVYRDSKTDSYKSTMLSPNPEMPICNICNILCENFEDLESHKLSHEDLEDEGVPIELSKYSCLICNKHFAAYADYNEHNLKLHADKQISNNVYPRQCDECDKVVSSGSAFASHKAMHRRLRDDSSRISKPESPQEKPKSRKSDNQEGEDYHTCKRCFKVFSSRYNLKMHMKLHGINVTTTGRTSRSPRKFHCDPCNLNFANNEALNDHINEEHDDMPELEEFNNGPYIFTCDVCVQTFSNKSALIQHKSKHHSQESGPSREDKKFVTYCKYCKIGFDRTEDLDKHMVKAHSEIPVPSKDSKANNKVFSCKICNKSFSTQTAMYAHQGWHKRTSNSGPLITQSKKYVPPATKKSPFECDVCGQELPNDIALKIHTIEKHGNVAALLTPKCESCNQEFGTQTEYENHMKLHEIVENQKVQKITYSCQLCTASFSKSETLQAHVKISHPTHLQEFKCPHCNRSFDKQASLTNHIKVHEKQKVVVAAGPKPTFQCSICSMGFNVPKDLRTHTITAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -