Mdis021903.1
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010001305.1:2818943-2821815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 3.4e+02 3.4 0.6 1 23 72 94 72 94 0.92 2 15 0.00018 0.036 15.9 1.7 2 23 100 121 99 121 0.96 3 15 0.0001 0.021 16.6 3.4 1 23 132 154 132 154 0.95 4 15 0.18 36 6.5 0.2 5 23 161 180 158 180 0.88 5 15 0.097 19 7.3 4.7 1 23 189 211 189 211 0.93 6 15 1.4 2.7e+02 3.7 0.3 1 23 216 238 216 238 0.93 7 15 3.5e-05 0.007 18.1 4.0 1 23 244 266 244 266 0.99 8 15 0.0019 0.37 12.7 0.6 1 23 269 292 269 292 0.97 9 15 1.7e-06 0.00035 22.2 2.4 1 23 301 323 301 323 0.98 10 15 0.00063 0.13 14.2 1.4 2 22 331 351 330 354 0.88 11 15 0.0031 0.62 12.0 0.5 1 23 364 387 364 387 0.93 12 15 0.004 0.8 11.7 1.9 3 23 396 416 395 416 0.98 13 15 0.0001 0.02 16.7 0.1 1 23 423 446 423 446 0.94 14 15 2.1e-07 4.1e-05 25.1 1.7 1 23 452 474 452 474 0.98 15 15 8.6e-05 0.017 16.9 5.2 1 23 480 503 480 503 0.96
Sequence Information
- Coding Sequence
- ATGCGCCAATTTCGCATGCCACTAGAGCACTCAAAGAATTTGACTACTTTCAAGAGGAAGATTGGTTCGATATTGAGAAACTTGAACAAGTTCGATGAGAAAGAGAAACATGATGCTTTCTCATACTTGCAAGGCTGCATTTCTGCTAAAAgaattgaaagaaataaattaaaaagGAAAAGAAAAAACAGGGGAACATTTAGAAAAAAGACTTATAAATGTGCAGAATGCGAATATACAGATTCAACAAGAAAAGGTATCTACACACATTTGAAAGGTCATTTAGGTTTTCCACTTTCATGCAAAACATGTAAAAAAACCTTTAACAATAACTTGTTATTCCAATGGCATCtacaaattcattgtaaaccAGATGGCAAGAAATGCATCGCAtatcactgtaatgaatgcccaaGGaaattcatgtCTAAACATAATCTTCTCAGGCATGTGGAAGGTCATCGAAGAAACAATTGTATTTATTGTGAACAAGTAATCACTAATAGAAAAAATCTGATTCAACACTTGTATAACGTTCATTCAATTAAATTAGAACGAGCAATTTTCAAATGTTCCCTATGTGATAAGAGgtaTGTCAAAAAAAGGTCTTTGTACTTCCATAAGAAACAGCATTTCAAGGACAAGTTTGTGTGTTTGGATTGTGGTTTCTTATGCGAAGATATTGATAAAATTGTTGAACATCAGAAAGAACATGAAAACCAAAAGAAGTTCAAATGTAACAAGTGTGATCAGAGATTCATCAGAAGACAACAATATTTATTACATATGAAGAAACATAATAATTATAGATGCCTTACATGTCAAGAGTCATTTGCATCCAAAATTAACATGGTTCTTCACAAGCAAAAGGGACATAATGTGGAAGAATTGAAACCTAAATTTTCGTGTTCCGATTGTGGCAAAAAATTCTTTCAAAACAGTCAGCTCATCTTACACACGAAGAAGCATTCTGaagagAAACCTACTTTAAACTGTAATTACTGTGATAAAACATTTCAATCCCCCTATGCTTATCACAAGCATAGTATAACAGTTTCACACGAAAAATGTAGTCCTGAAACTAGTGTTTTTGTATGTGAAAATTGTGGGAGTCAATTcccgaaaaaatatttattagaaCAGCACAATGCTAGAACTCATAACAATAAAAAAGAATATGTATTATGTGATTTTTGTCCATACAAAACAAAGAACAAAGCTAATATGAAACGTCATAAAGATACACATATTACtgatggaaaaaaattcatttgtgATCAATGTGGAAAAGATTTCAGTAATGTAGCTAGTTTGAAAGGACACATTTCCTACATTCATTCAAAGAGTAAACATTTCAAATGTGATCAGTGTGAGAAAACATTTAAGAGAAATTCTGAATTGGTAAGACATCAAGGAACTCATTCGGATGATAGACCTCATGTGTGTAAACTCTGTGGGCAATCTTATAAAAGATTAACTCATCTAAGAAGACATGAGAAATCATCCCATAATATCGAATCGCAGGTTAAACCAAATTTAAAACTTCGTATTGACTCAGATGGTAAACCAATTCCGATCGAGCTGGAAAAGAAAGAGAATCCACAATCGGCAGCTATTCTAACAAATGTGGAATCTTCTATTCCTGTATATTCACTGCTCAGCTCTGAACCATTAGCTTTAGTAAAACGGAAAACTGATCATTGTAGTCAGATTTTAATTGCAGAGCTGTCACAAGAAATATCTTATTTTGATAATATTTGTACCAATAATACAAATTCGGAGTTGAACACTTTGAAGGATGATGTAATCTTGGATATGTCCATGATGAACAATTCTTCCGAGACCCATTACTTTTCGAAAACTCAATGCACAAATGAATTAATTCAAGATTATATAGGGTATGAAAATATTCAGTTTTCTGTGAATAATACAGTTAGTTACATTAGTTCAGTGCCTTCTGACAGATATGTATTTAGTAACTTTCTCAATTCGATGGATAATCAAAACGataataattga
- Protein Sequence
- MRQFRMPLEHSKNLTTFKRKIGSILRNLNKFDEKEKHDAFSYLQGCISAKRIERNKLKRKRKNRGTFRKKTYKCAECEYTDSTRKGIYTHLKGHLGFPLSCKTCKKTFNNNLLFQWHLQIHCKPDGKKCIAYHCNECPRKFMSKHNLLRHVEGHRRNNCIYCEQVITNRKNLIQHLYNVHSIKLERAIFKCSLCDKRYVKKRSLYFHKKQHFKDKFVCLDCGFLCEDIDKIVEHQKEHENQKKFKCNKCDQRFIRRQQYLLHMKKHNNYRCLTCQESFASKINMVLHKQKGHNVEELKPKFSCSDCGKKFFQNSQLILHTKKHSEEKPTLNCNYCDKTFQSPYAYHKHSITVSHEKCSPETSVFVCENCGSQFPKKYLLEQHNARTHNNKKEYVLCDFCPYKTKNKANMKRHKDTHITDGKKFICDQCGKDFSNVASLKGHISYIHSKSKHFKCDQCEKTFKRNSELVRHQGTHSDDRPHVCKLCGQSYKRLTHLRRHEKSSHNIESQVKPNLKLRIDSDGKPIPIELEKKENPQSAAILTNVESSIPVYSLLSSEPLALVKRKTDHCSQILIAELSQEISYFDNICTNNTNSELNTLKDDVILDMSMMNNSSETHYFSKTQCTNELIQDYIGYENIQFSVNNTVSYISSVPSDRYVFSNFLNSMDNQNDNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -