Mdis039873.2
Basic Information
- Insect
- Micraspis discolor
- Gene Symbol
- -
- Assembly
- GCA_030674115.1
- Location
- JARTUT010002178.1:4582592-4604592[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.4e-05 0.0068 18.2 0.5 2 23 404 425 404 425 0.97 2 17 7.9e-05 0.016 17.0 1.5 1 20 431 450 431 453 0.94 3 17 1.6e-05 0.0032 19.2 2.9 1 23 459 481 459 481 0.98 4 17 7.5e-06 0.0015 20.2 4.3 1 21 487 507 487 509 0.95 5 17 0.00011 0.022 16.5 4.7 1 23 515 537 515 537 0.99 6 17 2.1e-05 0.0042 18.8 5.3 1 23 543 565 543 565 0.97 7 17 4.1e-06 0.00083 21.0 8.1 1 23 571 593 571 593 0.98 8 17 3.4 6.8e+02 2.4 0.6 10 23 599 611 596 611 0.87 9 17 3.5e-05 0.0071 18.1 5.8 1 23 617 639 617 639 0.97 10 17 1e-05 0.0021 19.8 1.3 1 19 645 663 645 664 0.97 11 17 0.094 19 7.3 3.4 8 23 663 678 662 678 0.93 12 17 2.3e-05 0.0047 18.7 9.1 1 23 684 706 684 706 0.98 13 17 1.4e-05 0.0028 19.4 7.7 1 23 712 734 712 734 0.98 14 17 9.2e-06 0.0018 20.0 7.1 1 23 740 762 740 762 0.97 15 17 0.00014 0.028 16.3 0.2 1 23 768 790 768 790 0.97 16 17 0.022 4.3 9.4 5.1 1 23 800 822 800 822 0.98 17 17 1.8e-07 3.6e-05 25.3 1.0 1 23 828 850 828 850 0.98
Sequence Information
- Coding Sequence
- atgAATACAAGTGAAAACAATCCGTTGAATAATGGTACCCATAATTCCAACAATTCTGAGGTGGACAGATCATTACCATCATCAACAATACCTACGGACCTACGAGTTAACACTACAGCGTTGAATACTGTAGCTCTGAGCGCTAGTGTGGCTAAATACTGGGTATTGACAAATCTTCTGACTGCTCCAATACCGCAAGTTTCAGTATACGGTCCATTAGCAGGTAGAGATGGACAAAAATTAACTCAGgaAGCTATGTTGGGTCAGCATGGACTCATGCCAGCAGAATCTTTGATGTTACCTCAACATTCTCAAATACCGGTCAGTATTGCCACATCACAGGGTGTAGCTAATTTAGCTCTTTCCACTGGGAGCATGCATCTGGATAATCAACATAACCATGCATCACTGGTTCATCATTCACAGCAGCAGTCTGAGAATATGTCAAATCATCAGAATCAAATTAGGGAGATGACCCAGCACTCTACACATTCTCAACATCCACAACAGCAAAATATGGTGCAAGTGCAAGTTCAGGATAATTTGGTTTCTGTTATTGAAGACAACAAAGAACACAAGGAAGCAATCGCTAATCACATCGCGCATGCGCATGCGCAACTCCATATCAACGAAAATCATCACATAAACCATCAGGCGCTTACTGTGCAACAACTACAGCATCAGGTTCAACAAGTCTTAGATAATGTGGTACGTCTTGAAAATTCCGTTGAGAATAATCAGAATCAATCCAATAATGAGGTCCACATGAGCGAAAACTTGCAAATGGTGAAAGATGAGAAGAGTCAGTCACAGCATCAAAACCTCAAATCCATACCCTCTCAGTTTGGGCTTCATAACCTGAAAGAGAACTTGATGGATGTTAGAACTACAGATGGATCTATTTTGAAGATATCAGCAAATGTACAAGAACAAGAACTAGTTAAAACATTAGGGGTTGAGATGGTACAAAACATGTACAAGgttAATGTTGACGATCTCAACCAACTTTTAGCATATCATGAAGTTTTCGGTAAACTACAGGGTGAAATACCTACCAGTGGTACACAAGGCATTATTCAAAGTACAGGGACCAGTGTAGCTCTTCAGACTCAAGGATCGAATGTCAATGTTCCGACACCGAAAGACGAGCAAGAAGCATCTACAAGTAATAATATTGAAAACGGAACTAACATTGTCAATGGAAACAACGTTTGTGATTTATGTGGAAAGATGTTTCAATACAGATACCAGCTAATTGTTCATAGgcGATATCACACTGAGAGGAAACCCTTTACTTGCCAAGTATGTGGTAAAGCATTTTCCAACGCCTTAGAGCTGACACGACATGGAAAATGCCATTTAGGAGGTAGCATGTTCACATGTTCTGTTTGTTTTCACGTATTTGCAAACAGTCAGTCACTGGAACGGCACATGAAGAGGCATTCCACGGATAAGCCATACAATTGTTCAATCTGTGGAAAATCATTTGCGAGGAAAGAACATTTGGAAAACCACAcaagGTGCCATACAGGGGAAACTCCGTACAGGTGCCAATTCTGTGCTAAAACTTTCACAAGAAAAGAACATATGGTGAACCATGTTCGCAAACATACTGGTGAAACCCCTCATAGATGTGAAATATGCAAGAAATCATTCACAAGAAAGGAACACTTCATGAATCATGTAATGTGGCATACAGGGGAAACTCCACATCAGTGCAATATATGCCATAAGAAGTACACCAGAAAAGAGCATCTTGCGAATCATATGAGATCCCACACAAATGACACACCGTTCAGAAAGGAGCATCTTCTGAATCACGTTAGGCAACATACGGGTGAATCTCCCCATCGATGTGGTTTCTGTTCCAAATCTTTCACCAGAAAAGAACATCTTATCAATCATGTTAGGCAGCACACTGGTGAGACTCCTTTCAGATGTAGTTACTGCCCGAAGGCTTTCACAAGGAAGGATCATTTGGTCAACCATTCATTCACTAGAAAGGAACATCTAACAAATCATGTCAGGCAGCACACTGGAGAATCTCCTCATCGGTGTCATTTTTGTTCAAAATCTTTCACCAGAAAGGAGCATTTAACTAATCACGTTAGAATTCATACAGGGGAGTCACCTCACCGTTGCGAATTCTGCCAGAAGACGTTCACTCGTAAGGAACATTTGACGAACCACCTTCGACAACATACTGGCGAGACCCCTCATTGTTGCAATGTATGCTCCAAACCGTTCACAAGAAAAGAACACCTGATTAATCATATGCGATCTCACACTGGAGAGAGACCGTTTGCTTGCGGGGAGTGCGGAAAATCGTTCCCGTTAAAGGGCAACCTTCTTTTCCATCAAAGGTCACACAATAAGGGCGCTCAGGCAGATAGACCGTTTCGTTGTGATTTGTGCGACAAGGATTTTATGTGTAAAGGTCATTTAGTTTCGCACCGTAGGTCGCACAGCGTGGAGAGGCCTCATGTGTGTCCCGATTGTGGAAAGACGTTTGTGGAGAAAGGTAACATGATGAGACATCTACGCAAGCATGCTACAGATAATGCACATCTGAATGCTCCTCAAACTTTAAACTCTCACACACAGCCACAATCTGCGAATCTACAAATTCCACAAGTTGGCCAGCCGACAAGTCCTCCTTCTAATGGAGCAATAGTTTCGCAACAACAGCAGCAGGGTCCTCCGCCACAGCATCTATCTATGCATGCTCCACCTCCACCTGTAAGTCATCCTGTCTTAGTGCCTGCACCCAATGGCAATGTACTGGCCTCATACTAG
- Protein Sequence
- MNTSENNPLNNGTHNSNNSEVDRSLPSSTIPTDLRVNTTALNTVALSASVAKYWVLTNLLTAPIPQVSVYGPLAGRDGQKLTQEAMLGQHGLMPAESLMLPQHSQIPVSIATSQGVANLALSTGSMHLDNQHNHASLVHHSQQQSENMSNHQNQIREMTQHSTHSQHPQQQNMVQVQVQDNLVSVIEDNKEHKEAIANHIAHAHAQLHINENHHINHQALTVQQLQHQVQQVLDNVVRLENSVENNQNQSNNEVHMSENLQMVKDEKSQSQHQNLKSIPSQFGLHNLKENLMDVRTTDGSILKISANVQEQELVKTLGVEMVQNMYKVNVDDLNQLLAYHEVFGKLQGEIPTSGTQGIIQSTGTSVALQTQGSNVNVPTPKDEQEASTSNNIENGTNIVNGNNVCDLCGKMFQYRYQLIVHRRYHTERKPFTCQVCGKAFSNALELTRHGKCHLGGSMFTCSVCFHVFANSQSLERHMKRHSTDKPYNCSICGKSFARKEHLENHTRCHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHQCNICHKKYTRKEHLANHMRSHTNDTPFRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLINHVRQHTGETPFRCSYCPKAFTRKDHLVNHSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRSHTGERPFACGECGKSFPLKGNLLFHQRSHNKGAQADRPFRCDLCDKDFMCKGHLVSHRRSHSVERPHVCPDCGKTFVEKGNMMRHLRKHATDNAHLNAPQTLNSHTQPQSANLQIPQVGQPTSPPSNGAIVSQQQQQGPPPQHLSMHAPPPPVSHPVLVPAPNGNVLASY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00020677;
- 90% Identity
- -
- 80% Identity
- -